-
1
-
-
0015236387
-
Reversible pressure-temperature denaturation of chymotrypsinogen
-
Hawley, S. A. 1971. Reversible pressure-temperature denaturation of chymotrypsinogen. Biochemistry. 10:2436-2442.
-
(1971)
Biochemistry
, vol.10
, pp. 2436-2442
-
-
Hawley, S.A.1
-
2
-
-
0031714901
-
Protein structure and dynamics at high pressure
-
Heremans, K., and L. Smeller. 1998. Protein structure and dynamics at high pressure. Biochim. Biophys. Acta. 1386:353-370.
-
(1998)
Biochim. Biophys. Acta
, vol.1386
, pp. 353-370
-
-
Heremans, K.1
Smeller, L.2
-
3
-
-
0037437224
-
On the temperature-pressure freeenergy landscape of proteins
-
Ravindra, R., and R. Winter. 2003. On the temperature-pressure freeenergy landscape of proteins. ChemPhysChem. 4:359-365.
-
(2003)
ChemPhysChem
, vol.4
, pp. 359-365
-
-
Ravindra, R.1
Winter, R.2
-
4
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K. A. 1990. Dominant forces in protein folding. Biochemistry. 29: 7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
5
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann, W. 1959. Some factors in the interpretation of protein denaturation. Adv. Protein Chem. 14:1-63.
-
(1959)
Adv. Protein Chem
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
6
-
-
0022412192
-
Hydrophobicity of amino-acid residues in globular-proteins
-
Rose, G. D., A. R. Geselowitz, G. J. Lesser, R. H. Lee, and M. H. Zehfus. 1985. Hydrophobicity of amino-acid residues in globular-proteins. Science. 229:834-838.
-
(1985)
Science
, vol.229
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
Lee, R.H.4
Zehfus, M.H.5
-
7
-
-
77956714255
-
The properties of proteins in nonaqueous solvents
-
Singer, S. J. 1962. The properties of proteins in nonaqueous solvents. Adv. Protein Chem. 17:1-68.
-
(1962)
Adv. Protein Chem
, vol.17
, pp. 1-68
-
-
Singer, S.J.1
-
8
-
-
0000180763
-
Temperature-dependence of the hydrophobic interaction in protein folding
-
Baldwin, R. L. 1986. Temperature-dependence of the hydrophobic interaction in protein folding. Proc. Natl. Acad. Sci. USA. 83:8069-8072.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 8069-8072
-
-
Baldwin, R.L.1
-
9
-
-
36849150819
-
Protein stabilization - thermodynamics of unfolding
-
Kauzmann, W. 1987. Protein stabilization - thermodynamics of unfolding. Nature. 325:763-764.
-
(1987)
Nature
, vol.325
, pp. 763-764
-
-
Kauzmann, W.1
-
10
-
-
0032539604
-
The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins
-
Hummer, G., S. Garde, A. E. Garcia, M. E. Paulaitis, and L. R. Pratt. 1998. The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins. Proc. Natl. Acad. Sci. USA. 95:1552-1555.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1552-1555
-
-
Hummer, G.1
Garde, S.2
Garcia, A.E.3
Paulaitis, M.E.4
Pratt, L.R.5
-
11
-
-
11744348751
-
Hydrophobic effects on a molecular scale
-
Hummer, G., S. Garde, A. E. Garcia, M. E. Paulaitis, and L. R. Pratt. 1998. Hydrophobic effects on a molecular scale. J. Phys. Chem. B. 102:10469-10482.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 10469-10482
-
-
Hummer, G.1
Garde, S.2
Garcia, A.E.3
Paulaitis, M.E.4
Pratt, L.R.5
-
12
-
-
0011960339
-
Hydrophobicity at small and large length scales
-
Lum, K., D. Chandler, and J. D. Weeks. 1999. Hydrophobicity at small and large length scales. J. Phys. Chem. B. 103:4570-4577.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 4570-4577
-
-
Lum, K.1
Chandler, D.2
Weeks, J.D.3
-
13
-
-
0037078482
-
Hydrophobic interactions: An overview
-
ten Wolde, P. R. 2002. Hydrophobic interactions: an overview. J. Phys. Cond. Matt. 14:9445-9460.
-
(2002)
J. Phys. Cond. Matt
, vol.14
, pp. 9445-9460
-
-
ten Wolde, P.R.1
-
15
-
-
33846512404
-
Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water
-
Athawale, M. V., G. Goel, T. Ghosh, T. M. Truskett, and S. Garde. 2007. Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water. Proc. Natl. Acad. Sci. USA. 104: 733-738.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 733-738
-
-
Athawale, M.V.1
Goel, G.2
Ghosh, T.3
Truskett, T.M.4
Garde, S.5
-
16
-
-
0032561237
-
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
-
Duan, Y., and P. A. Kollman. 1998. Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. Science. 282:740-744.
-
(1998)
Science
, vol.282
, pp. 740-744
-
-
Duan, Y.1
Kollman, P.A.2
-
17
-
-
4344619300
-
All-atom folding simulations of the villin headpiece from stochastically selected coarse-grained structures
-
De Mori, G. M. S., C. Micheletti, and G. Colombo. 2004. All-atom folding simulations of the villin headpiece from stochastically selected coarse-grained structures. J. Phys. Chem. B. 108:12267-12270.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 12267-12270
-
-
De Mori, G.M.S.1
Micheletti, C.2
Colombo, G.3
-
18
-
-
1942519803
-
beta-hairpin folding mechanism of a nine-residue peptide revealed from molecular dynamics simulations in explicit water
-
Wu, X. W., and B. R. Brooks. 2004. beta-hairpin folding mechanism of a nine-residue peptide revealed from molecular dynamics simulations in explicit water. Biophys. J. 86:1946-1958.
-
(2004)
Biophys. J
, vol.86
, pp. 1946-1958
-
-
Wu, X.W.1
Brooks, B.R.2
-
19
-
-
2342448436
-
Simulations of the role of water in the protein-folding mechanism
-
Rhee, Y. M., E. J. Sorin, G. Jayachandran, E. Lindahl, and V. S. Pande. 2004. Simulations of the role of water in the protein-folding mechanism. Proc. Natl. Acad. Sci. USA. 101:6456-6461.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6456-6461
-
-
Rhee, Y.M.1
Sorin, E.J.2
Jayachandran, G.3
Lindahl, E.4
Pande, V.S.5
-
20
-
-
4644236471
-
Hydrophobic collapse in multidomain protein folding
-
Zhou, R. H., X. H. Huang, C. J. Margulis, and B. J. Berne. 2004. Hydrophobic collapse in multidomain protein folding. Science. 305:1605-1609.
-
(2004)
Science
, vol.305
, pp. 1605-1609
-
-
Zhou, R.H.1
Huang, X.H.2
Margulis, C.J.3
Berne, B.J.4
-
21
-
-
2542633488
-
Protein-water interactions in ribonuclease A and angiogenin: A molecular dynamics study
-
Sanjeev, B. S., and S. Vishveshwara. 2004. Protein-water interactions in ribonuclease A and angiogenin: a molecular dynamics study. Proteins. 55:915-923.
-
(2004)
Proteins
, vol.55
, pp. 915-923
-
-
Sanjeev, B.S.1
Vishveshwara, S.2
-
22
-
-
16344381007
-
Pressure denaturation of staphylococcal nuclease studied by neutron small-angle scattering and molecular simulation
-
Paliwal, A., D. Asthagiri, D. P. Bossev, and M. E. Paulaitis. 2004. Pressure denaturation of staphylococcal nuclease studied by neutron small-angle scattering and molecular simulation. Biophys. J. 87:3479-3492.
-
(2004)
Biophys. J
, vol.87
, pp. 3479-3492
-
-
Paliwal, A.1
Asthagiri, D.2
Bossev, D.P.3
Paulaitis, M.E.4
-
23
-
-
0036892356
-
All-atom fast protein folding simulations: The villin headpiece
-
Shen, M. Y., and K. F. Freed. 2002. All-atom fast protein folding simulations: the villin headpiece. Proteins. 49:439-445.
-
(2002)
Proteins
, vol.49
, pp. 439-445
-
-
Shen, M.Y.1
Freed, K.F.2
-
24
-
-
0038133195
-
Folding and misfolding of the papillomavirus E6 interacting peptide E6ap
-
Cui, B. X., M. Y. Shen, and K. F. Freed. 2003. Folding and misfolding of the papillomavirus E6 interacting peptide E6ap. Proc. Natl. Acad. Sci. USA. 100:7087-7092.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7087-7092
-
-
Cui, B.X.1
Shen, M.Y.2
Freed, K.F.3
-
25
-
-
4544223597
-
Characterizing the rate-limiting step of Trp-cage folding by all-atom molecular dynamics simulations
-
Chowdhury, S., M. C. Lee, and Y. Duan. 2004. Characterizing the rate-limiting step of Trp-cage folding by all-atom molecular dynamics simulations. J. Phys. Chem. B. 108:13855-13865.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 13855-13865
-
-
Chowdhury, S.1
Lee, M.C.2
Duan, Y.3
-
26
-
-
21244495332
-
Folding thermodynamics of peptides
-
Irback, A., and S. Mohanty. 2005. Folding thermodynamics of peptides. Biophys. J. 88:1560-1569.
-
(2005)
Biophys. J
, vol.88
, pp. 1560-1569
-
-
Irback, A.1
Mohanty, S.2
-
27
-
-
1542375359
-
Temperature-dependent conformational transitions and hydrogen-bond dynamics of the elastin-like octapeptide GVG(VPGVG): A molecula-rdynamics study
-
Rousseau, R., E. Schreiner, A. Kohlmeyer, and D. Marx. 2004. Temperature-dependent conformational transitions and hydrogen-bond dynamics of the elastin-like octapeptide GVG(VPGVG): a molecula-rdynamics study. Biophys. J. 86:1393-1407.
-
(2004)
Biophys. J
, vol.86
, pp. 1393-1407
-
-
Rousseau, R.1
Schreiner, E.2
Kohlmeyer, A.3
Marx, D.4
-
28
-
-
18144364015
-
In silico folding of a three helix protein and characterization of its free-energy landscape in an all-atom force field
-
Herges, T., and W. Wenzel. 2005. In silico folding of a three helix protein and characterization of its free-energy landscape in an all-atom force field. Phys. Rev. Lett. 94:018101.
-
(2005)
Phys. Rev. Lett
, vol.94
, pp. 018101
-
-
Herges, T.1
Wenzel, W.2
-
29
-
-
11244302065
-
An all-atom force field for tertiary structure prediction of helical proteins
-
Herges, T., and W. Wenzel. 2004. An all-atom force field for tertiary structure prediction of helical proteins. Biophys. J. 87:3100-3109.
-
(2004)
Biophys. J
, vol.87
, pp. 3100-3109
-
-
Herges, T.1
Wenzel, W.2
-
30
-
-
18744415073
-
Simulations of the pressure and temperature unfolding of an alpha-helical peptide
-
Paschek, D., S. Gnanakaran, and A. E. Garcia. 2005. Simulations of the pressure and temperature unfolding of an alpha-helical peptide. Proc. Natl. Acad. Sci. USA. 102:6765-6770.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6765-6770
-
-
Paschek, D.1
Gnanakaran, S.2
Garcia, A.E.3
-
31
-
-
37649031797
-
Reversible temperature and pressure denaturation of a protein fragment: A replica exchange molecular dynamics simulation study
-
Paschek, D., and A. E. Garcia. 2004. Reversible temperature and pressure denaturation of a protein fragment: A replica exchange molecular dynamics simulation study. Phys. Rev. Lett. 93:238105.
-
(2004)
Phys. Rev. Lett
, vol.93
, pp. 238105
-
-
Paschek, D.1
Garcia, A.E.2
-
32
-
-
0024750637
-
A lattice statistical-mechanics model of the conformational and sequence-spaces of proteins
-
Lau, K. F., and K. A. Dill. 1989. A lattice statistical-mechanics model of the conformational and sequence-spaces of proteins. Macromolecules. 22:3986-3997.
-
(1989)
Macromolecules
, vol.22
, pp. 3986-3997
-
-
Lau, K.F.1
Dill, K.A.2
-
33
-
-
33744825406
-
Sequence space soup of proteins and copolymers
-
Chan, H. S., and K. A. Dill. 1991. Sequence space soup of proteins and copolymers. J. Chem. Phys. 95:3775-3787.
-
(1991)
J. Chem. Phys
, vol.95
, pp. 3775-3787
-
-
Chan, H.S.1
Dill, K.A.2
-
34
-
-
0034516064
-
Putting proteins back into water
-
De Los Rios, P., and G. Caldarelli. 2000. Putting proteins back into water. Phys. Rev. E. 62:8449-8452.
-
(2000)
Phys. Rev. E
, vol.62
, pp. 8449-8452
-
-
De Los Rios, P.1
Caldarelli, G.2
-
35
-
-
0035684441
-
Cold and warm denaturation of proteins
-
Caldarelli, G., and P. De Los Rios. 2001. Cold and warm denaturation of proteins. J. Biol. Phys. 27:229-241.
-
(2001)
J. Biol. Phys
, vol.27
, pp. 229-241
-
-
Caldarelli, G.1
De Los Rios, P.2
-
36
-
-
41349094523
-
Design of lattice proteins with explicit solvent
-
Salvi, G., S. Molbert, and P. De Los Rios. 2002. Design of lattice proteins with explicit solvent. Phys. Rev. E. 66:061911.
-
(2002)
Phys. Rev. E
, vol.66
, pp. 061911
-
-
Salvi, G.1
Molbert, S.2
De Los Rios, P.3
-
37
-
-
17644446703
-
Effective interactions cannot replace solvent effects in a lattice model of proteins
-
Salvi, G., and P. De Los Rios. 2003. Effective interactions cannot replace solvent effects in a lattice model of proteins. Phys. Rev. Lett. 91:258102.
-
(2003)
Phys. Rev. Lett
, vol.91
, pp. 258102
-
-
Salvi, G.1
De Los Rios, P.2
-
38
-
-
0001843048
-
Search for a realistic view of hydrophobic effects
-
Muller, N. 1990. Search for a realistic view of hydrophobic effects. Accounts Chem. Res. 23:23-28.
-
(1990)
Accounts Chem. Res
, vol.23
, pp. 23-28
-
-
Muller, N.1
-
39
-
-
0029939483
-
A two-state model of hydrophobic hydration that produces compensating enthalpy and entropy changes
-
Lee, B., and G. Graziano. 1996. A two-state model of hydrophobic hydration that produces compensating enthalpy and entropy changes. J. Am. Chem. Soc. 118:5163-5168.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 5163-5168
-
-
Lee, B.1
Graziano, G.2
-
40
-
-
0022423920
-
Theory for the folding and stability of globular-proteins
-
Dill, K. A. 1985. Theory for the folding and stability of globular-proteins. Biochemistry. 24:1501-1509.
-
(1985)
Biochemistry
, vol.24
, pp. 1501-1509
-
-
Dill, K.A.1
-
41
-
-
0024359551
-
Thermal stabilities of globular-proteins
-
Dill, K. A., D. O. V. Alonso, and K. Hutchinson. 1989. Thermal stabilities of globular-proteins. Biochemistry. 28:5439-5449.
-
(1989)
Biochemistry
, vol.28
, pp. 5439-5449
-
-
Dill, K.A.1
Alonso, D.O.V.2
Hutchinson, K.3
-
42
-
-
33749453423
-
Heteropolymer collapse theory for protein folding in the pressure-temperature plane
-
Cheung, J. K., P. Shah, and T. M. Truskett. 2006. Heteropolymer collapse theory for protein folding in the pressure-temperature plane. Biophys. J. 91:2427-2435.
-
(2006)
Biophys. J
, vol.91
, pp. 2427-2435
-
-
Cheung, J.K.1
Shah, P.2
Truskett, T.M.3
-
43
-
-
0242352685
-
Possible mechanism for cold denaturation of proteins at high pressure
-
Marques, M. I., J. M. Borreguero, H. E. Stanley, and N. V. Dokholyan. 2003. Possible mechanism for cold denaturation of proteins at high pressure. Phys. Rev. Lett. 91:138103.
-
(2003)
Phys. Rev. Lett
, vol.91
, pp. 138103
-
-
Marques, M.I.1
Borreguero, J.M.2
Stanley, H.E.3
Dokholyan, N.V.4
-
44
-
-
0034724564
-
The pressure-temperature free energy-landscape of staphylococcal nuclease monitored by H-1 NMR
-
Lassalle, M. W., H. Yamada, and K. Akasaka. 2000. The pressure-temperature free energy-landscape of staphylococcal nuclease monitored by H-1 NMR. J. Mol. Biol. 298:293-302.
-
(2000)
J. Mol. Biol
, vol.298
, pp. 293-302
-
-
Lassalle, M.W.1
Yamada, H.2
Akasaka, K.3
-
45
-
-
36849117971
-
Free volume and entropy in condensed systems. 3. Entropy in binary liquid mixtures - partial molal entropy in dilute solutions - structure and thermodynamics in aqueous electrolytes
-
Frank, H. S., and M. W. Evans. 1945. Free volume and entropy in condensed systems. 3. Entropy in binary liquid mixtures - partial molal entropy in dilute solutions - structure and thermodynamics in aqueous electrolytes. J. Chem. Phys. 13:507-532.
-
(1945)
J. Chem. Phys
, vol.13
, pp. 507-532
-
-
Frank, H.S.1
Evans, M.W.2
-
46
-
-
0001101089
-
Singularity-free interpretation of the thermodynamics of supercooled water
-
Sastry, S., P. G. Debenedetti, F. Sciortino, and H. E. Stanley. 1996. Singularity-free interpretation of the thermodynamics of supercooled water. Phys. Rev. E. 53:6144-6154.
-
(1996)
Phys. Rev. E
, vol.53
, pp. 6144-6154
-
-
Sastry, S.1
Debenedetti, P.G.2
Sciortino, F.3
Stanley, H.E.4
-
47
-
-
0000204784
-
Singularity-free interpretation of the thermodynamics of supercooled water. II. Thermal and volumetric behavior
-
Rebelo, L. P. N., P. G. Debenedetti, and S. Sastry. 1998. Singularity-free interpretation of the thermodynamics of supercooled water. II. Thermal and volumetric behavior. J. Chem. Phys. 109:626-633.
-
(1998)
J. Chem. Phys
, vol.109
, pp. 626-633
-
-
Rebelo, L.P.N.1
Debenedetti, P.G.2
Sastry, S.3
-
48
-
-
0037717183
-
Intramolecular coupling as a mechanism for a liquid-liquid phase transition
-
Franzese, G., M. I. Marques, and H. E. Stanley. 2003. Intramolecular coupling as a mechanism for a liquid-liquid phase transition. Phys. Rev. E. 67:011103.
-
(2003)
Phys. Rev. E
, vol.67
, pp. 011103
-
-
Franzese, G.1
Marques, M.I.2
Stanley, H.E.3
-
50
-
-
37049097878
-
Molecular librations and solvent orientational correlations in hydrophobic phenomena
-
Rossky, P. J., and D. A. Zichi. 1982. Molecular librations and solvent orientational correlations in hydrophobic phenomena. Faraday Symp. Chem. Soc. 17:69-78.
-
(1982)
Faraday Symp. Chem. Soc
, vol.17
, pp. 69-78
-
-
Rossky, P.J.1
Zichi, D.A.2
-
51
-
-
39749147672
-
Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram
-
Wang, F. G., and D. P. Landau. 2001. Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram. Phys. Rev. E. 64:056101.
-
(2001)
Phys. Rev. E
, vol.64
, pp. 056101
-
-
Wang, F.G.1
Landau, D.P.2
-
52
-
-
0038333434
-
Temperature range of thermodynamic stability for the native state of reversible two-state proteins
-
Kumar, S., C. J. Tsai, and R. Nussinov. 2003. Temperature range of thermodynamic stability for the native state of reversible two-state proteins. Biochemistry. 42:4864-4873.
-
(2003)
Biochemistry
, vol.42
, pp. 4864-4873
-
-
Kumar, S.1
Tsai, C.J.2
Nussinov, R.3
-
53
-
-
36849117243
-
Partial molal volumes of hydrocarbons in water solution
-
Masterton, W. L. 1954. Partial molal volumes of hydrocarbons in water solution. J. Chem. Phys. 22:1830-1833.
-
(1954)
J. Chem. Phys
, vol.22
, pp. 1830-1833
-
-
Masterton, W.L.1
-
54
-
-
0030356081
-
Volumes of aqueous solutions of CH4, CO2, H2S, and NH3 at temperatures from 298.15 K to 705 K and pressures to 35 MPa
-
Hnedkovsky, L., R. H. Wood, and V. Majer. 1996. Volumes of aqueous solutions of CH4, CO2, H2S, and NH3 at temperatures from 298.15 K to 705 K and pressures to 35 MPa. J. Chem. Therm. 28:125-142.
-
(1996)
J. Chem. Therm
, vol.28
, pp. 125-142
-
-
Hnedkovsky, L.1
Wood, R.H.2
Majer, V.3
-
55
-
-
0000189181
-
Effect of pressure on the solubilities of benzene and alkylbenzenes in water
-
Sawamura, S., K. Kitamura, and Y. Taniguchi. 1989. Effect of pressure on the solubilities of benzene and alkylbenzenes in water. J. Phys. Chem. 93:4931-4935.
-
(1989)
J. Phys. Chem
, vol.93
, pp. 4931-4935
-
-
Sawamura, S.1
Kitamura, K.2
Taniguchi, Y.3
-
56
-
-
16444374355
-
Extending the pressure-temperature state diagram of myoglobin
-
Meersman, F., L. Smeller, and K. Heremans. 2005. Extending the pressure-temperature state diagram of myoglobin. Helv. Chim. Acta. 88:546-556.
-
(2005)
Helv. Chim. Acta
, vol.88
, pp. 546-556
-
-
Meersman, F.1
Smeller, L.2
Heremans, K.3
|