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Volumn 27, Issue 1, 2008, Pages 17-27

Design and validation of a low density array (Nosochip) for the detection and identification of the main pathogenic bacteria and fungi responsible for nosocomial pneumonia

Author keywords

[No Author keywords available]

Indexed keywords

AMPLICON; ARTICLE; BACTERIAL STRAIN; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; FUNGAL DETECTION; FUNGAL STRAIN; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; MOLECULAR HYBRIDIZATION; NONHUMAN; PHYLOGENY; PNEUMONIA; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 36649006608     PISSN: 09349723     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10096-007-0394-1     Document Type: Article
Times cited : (8)

References (29)
  • 1
    • 0033952657 scopus 로고    scopus 로고
    • Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array
    • Anthony RM, Brown TJ, French GL (2000) Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol 38:781-788
    • (2000) J Clin Microbiol , vol.38 , pp. 781-788
    • Anthony, R.M.1    Brown, T.J.2    French, G.L.3
  • 2
    • 0026493620 scopus 로고
    • Rapid, sensitive detection of Mycoplasma pneumoniae in simulated clinical specimens by DNA amplification
    • Buck GE, O'Hara LC, Summersgill JT (1992) Rapid, sensitive detection of Mycoplasma pneumoniae in simulated clinical specimens by DNA amplification. J Clin Microbiol 30:3280-3283
    • (1992) J Clin Microbiol , vol.30 , pp. 3280-3283
    • Buck, G.E.1    O'Hara, L.C.2    Summersgill, J.T.3
  • 3
    • 0036194336 scopus 로고    scopus 로고
    • 16S-23S rDNA internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Fusobacterium
    • Conrads GM, Claros C, Citron DM, Tyrrell KL, Merriam V, Goldstein EJ (2002) 16S-23S rDNA internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Fusobacterium. Int J Syst Evol Microbiol 52:493-499
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 493-499
    • Conrads, G.M.1    Claros, C.2    Citron, D.M.3    Tyrrell, K.L.4    Merriam, V.5    Goldstein, E.J.6
  • 4
    • 0042173407 scopus 로고    scopus 로고
    • Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex
    • Cukras AR, Southworth DR, Brunelle JL, Culver GM, Green R (2003) Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex. Mol Cell 12:321-328
    • (2003) Mol Cell , vol.12 , pp. 321-328
    • Cukras, A.R.1    Southworth, D.R.2    Brunelle, J.L.3    Culver, G.M.4    Green, R.5
  • 5
    • 0031917138 scopus 로고    scopus 로고
    • Prospective study to determine clinical relevance of detection of pneumococcal DNA in sera of children by PCR
    • Dagan R, Shriker O, Hazan I, Leibovitz E, Greenberg D, Schlaeffer F, Levy R (1998) Prospective study to determine clinical relevance of detection of pneumococcal DNA in sera of children by PCR. J Clin Microbiol 36:669-673
    • (1998) J Clin Microbiol , vol.36 , pp. 669-673
    • Dagan, R.1    Shriker, O.2    Hazan, I.3    Leibovitz, E.4    Greenberg, D.5    Schlaeffer, F.6    Levy, R.7
  • 6
    • 31544469804 scopus 로고    scopus 로고
    • Real-time PCR in clinical microbiology: Applications for routine laboratory testing
    • Espy M (2006) Real-time PCR in clinical microbiology: applications for routine laboratory testing. Clin Microbiol Rev 19:165-256
    • (2006) Clin Microbiol Rev , vol.19 , pp. 165-256
    • Espy, M.1
  • 8
    • 0027405180 scopus 로고
    • Detection of Mycobacterium tuberculosis DNA in clinical samples by using a simple lysis method and polymerase chain reaction
    • Folgueira L, Delgado R, Palenque E, Noriega AR (1993) Detection of Mycobacterium tuberculosis DNA in clinical samples by using a simple lysis method and polymerase chain reaction. J Clin Microbiol 31:1019-1021
    • (1993) J Clin Microbiol , vol.31 , pp. 1019-1021
    • Folgueira, L.1    Delgado, R.2    Palenque, E.3    Noriega, A.R.4
  • 10
    • 0036701963 scopus 로고    scopus 로고
    • Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence
    • Fukushima M, Kakinuma, K, Kawaguchi R (2002) Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J Clin Microbiol 40:2779-2785
    • (2002) J Clin Microbiol , vol.40 , pp. 2779-2785
    • Fukushima, M.1    Kakinuma, K.2    Kawaguchi, R.3
  • 11
    • 0142123526 scopus 로고    scopus 로고
    • Comprehensive detection of bacterial populations by PCR amplification of the 16S-23S rRNA spacer region
    • Gonzalez N, Romero J, Espejo RT (2003) Comprehensive detection of bacterial populations by PCR amplification of the 16S-23S rRNA spacer region. J Microbiol Methods 55:91-97
    • (2003) J Microbiol Methods , vol.55 , pp. 91-97
    • Gonzalez, N.1    Romero, J.2    Espejo, R.T.3
  • 12
    • 0035213103 scopus 로고    scopus 로고
    • Consensus PCR and microarray for diagnosis of the genus Staphylococcus, species, and methicillin resistance
    • Hamels S, Gala JL, Dufour S, Vannuffel P, Zammatteo N, Remacle J (2001) Consensus PCR and microarray for diagnosis of the genus Staphylococcus, species, and methicillin resistance. Biotechniques 31:1364-1366, 1368, 1370-1372
    • (2001) Biotechniques , vol.31 , pp. 1364-1366
    • Hamels, S.1    Gala, J.L.2    Dufour, S.3    Vannuffel, P.4    Zammatteo, N.5    Remacle, J.6
  • 13
    • 0036251559 scopus 로고    scopus 로고
    • Rapid PCR-based identification of methicillin-resistant Staphylococcus aureus from screening swabs
    • Jonas D, Speck M, Daschner FD, Grundmann H (2002) Rapid PCR-based identification of methicillin-resistant Staphylococcus aureus from screening swabs. J Clin Microbiol 40:1821-1823
    • (2002) J Clin Microbiol , vol.40 , pp. 1821-1823
    • Jonas, D.1    Speck, M.2    Daschner, F.D.3    Grundmann, H.4
  • 15
    • 4644336437 scopus 로고    scopus 로고
    • Use of culture, PCR analysis, and DNA microarrays for detection of Campylobacter jejuni and Campylobacter coli from chicken feces
    • Keramas G, Bang DD, Lund M, Madsen M, Bunkenborg H, Telleman P, Christensen CB (2004) Use of culture, PCR analysis, and DNA microarrays for detection of Campylobacter jejuni and Campylobacter coli from chicken feces. J Clin Microbiol 42:3985-3991
    • (2004) J Clin Microbiol , vol.42 , pp. 3985-3991
    • Keramas, G.1    Bang, D.D.2    Lund, M.3    Madsen, M.4    Bunkenborg, H.5    Telleman, P.6    Christensen, C.B.7
  • 17
    • 26944441639 scopus 로고    scopus 로고
    • Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses
    • Leinberger DM, Schumacher U, Autenrieth IB, Bachmann TT (2005) Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses. J Clin Microbiol 43:4943-4953
    • (2005) J Clin Microbiol , vol.43 , pp. 4943-4953
    • Leinberger, D.M.1    Schumacher, U.2    Autenrieth, I.B.3    Bachmann, T.T.4
  • 18
    • 1542723586 scopus 로고    scopus 로고
    • Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences
    • Mitterer G, Huber M, Leidinger E, Kirisits C, Lubitz W, Mueller MW, Schmidt WM (2004) Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences. J Clin Microbiol 42:1048-1057
    • (2004) J Clin Microbiol , vol.42 , pp. 1048-1057
    • Mitterer, G.1    Huber, M.2    Leidinger, E.3    Kirisits, C.4    Lubitz, W.5    Mueller, M.W.6    Schmidt, W.M.7
  • 19
    • 0025171362 scopus 로고
    • Detection and identification of Mycobacterium tuberculosis by DNA amplification
    • Pao CC, Yen TS, You JB, Maa JS, Fiss EH, Chang CH (1990) Detection and identification of Mycobacterium tuberculosis by DNA amplification. J Clin Microbiol 28:1877-1880
    • (1990) J Clin Microbiol , vol.28 , pp. 1877-1880
    • Pao, C.C.1    Yen, T.S.2    You, J.B.3    Maa, J.S.4    Fiss, E.H.5    Chang, C.H.6
  • 20
    • 0037335692 scopus 로고    scopus 로고
    • Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
    • Peplies J, Glockner FO, Amann R (2003) Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl Environ Microbiol 69:1397-1407
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1397-1407
    • Peplies, J.1    Glockner, F.O.2    Amann, R.3
  • 23
    • 0242414021 scopus 로고    scopus 로고
    • A functional interaction between ribosomal proteins S7 and S11 within the bacterial ribosome
    • Robert F, Brakier-Gingras L (2003) A functional interaction between ribosomal proteins S7 and S11 within the bacterial ribosome. J Biol Chem 278:44913-44920
    • (2003) J Biol Chem , vol.278 , pp. 44913-44920
    • Robert, F.1    Brakier-Gingras, L.2
  • 24
    • 4644298072 scopus 로고    scopus 로고
    • Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections
    • Roth SB, Jalava J, Ruuskanen O, Ruohola A, Nikkari S (2004) Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections. J Clin Microbiol 42:4268-4274
    • (2004) J Clin Microbiol , vol.42 , pp. 4268-4274
    • Roth, S.B.1    Jalava, J.2    Ruuskanen, O.3    Ruohola, A.4    Nikkari, S.5
  • 25
    • 0024972526 scopus 로고
    • Protein structure. Chaperones, paperones
    • Sambrook J, Gething MJ (1989) Protein structure. Chaperones, paperones. Nature 342:224-225
    • (1989) Nature , vol.342 , pp. 224-225
    • Sambrook, J.1    Gething, M.J.2
  • 26
    • 0033826467 scopus 로고    scopus 로고
    • Rapid identification of Pseudomonas aeruginosa from ocular isolates by PCR using exotoxin A-specific primers
    • Song KP, Chan, TK, Ji ZL, Wong SW (2000) Rapid identification of Pseudomonas aeruginosa from ocular isolates by PCR using exotoxin A-specific primers. Mol Cell Probes 14:199-204
    • (2000) Mol Cell Probes , vol.14 , pp. 199-204
    • Song, K.P.1    Chan, T.K.2    Ji, Z.L.3    Wong, S.W.4
  • 27
    • 0027498480 scopus 로고
    • Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes
    • Takewaki S, Okuzumi K, Ishiko H, Nakahara K, Ohkubo A, Nagai R (1993) Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes. J Clin Microbiol 31:446-450
    • (1993) J Clin Microbiol , vol.31 , pp. 446-450
    • Takewaki, S.1    Okuzumi, K.2    Ishiko, H.3    Nakahara, K.4    Ohkubo, A.5    Nagai, R.6
  • 28
    • 0037031130 scopus 로고    scopus 로고
    • Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples
    • Wang RF, Beggs ML, Robertson LH, Cerniglia CE (2002) Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol Lett 213:175-182
    • (2002) FEMS Microbiol Lett , vol.213 , pp. 175-182
    • Wang, R.F.1    Beggs, M.L.2    Robertson, L.H.3    Cerniglia, C.E.4
  • 29
    • 0034630345 scopus 로고    scopus 로고
    • Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays
    • Zammatteo N, Jeanmart L, Hamels S, Courtois S, Louette P, Hevesi L, Remacle J (2000) Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays. Anal Biochem 280:143-150
    • (2000) Anal Biochem , vol.280 , pp. 143-150
    • Zammatteo, N.1    Jeanmart, L.2    Hamels, S.3    Courtois, S.4    Louette, P.5    Hevesi, L.6    Remacle, J.7


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