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Volumn 40, Issue 8, 2002, Pages 2779-2785

Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING);

EID: 0036701963     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.40.8.2779-2785.2002     Document Type: Article
Times cited : (160)

References (39)
  • 1
    • 0028053174 scopus 로고
    • Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) from natural populations of Escherichia coli and Salmonella enterica
    • Boyd, E. F., K. Nelson, F. S. Wang, T. S. Whittam, and R. K. Selander. 1994. Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) from natural populations of Escherichia coli and Salmonella enterica. Proc. Natl. Acad. Sci. USA 91:1280-1284.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1280-1284
    • Boyd, E.F.1    Nelson, K.2    Wang, F.S.3    Whittam, T.S.4    Selander, R.K.5
  • 2
    • 15144352558 scopus 로고    scopus 로고
    • Comparative genetics of the inv-spa invasion gene complex of Salmonella enteticit
    • Boyd, E. F., J. Li, H. Ochman, and R. K. Selander. 1997. Comparative genetics of the inv-spa invasion gene complex of Salmonella enteticit. J. Bacteriol. 179:1985-1991.
    • (1997) J. Bacteriol. , vol.179 , pp. 1985-1991
    • Boyd, E.F.1    Li, J.2    Ochman, H.3    Selander, R.K.4
  • 4
    • 0000257772 scopus 로고
    • Family I. Enterobacteriacea
    • N. R. Krieg and J. G. Holt (ed.). Williams & Wilkins, Baltimore, Md.
    • Brenner, D. J. 1984. Family I. Enterobacteriacea, p. 408-420. In N. R. Krieg and J. G. Holt (ed.), Bergey's Manual of Systematic Bacteriology, vol. 1. Williams & Wilkins, Baltimore, Md.
    • (1984) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 408-420
    • Brenner, D.J.1
  • 5
    • 0034977165 scopus 로고    scopus 로고
    • Novel type of fimbriae encoded by the large plasmid of sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H(-)
    • Brunder, W., A. S. Khan, J. Hacker, and H. Karch. 2001. Novel type of fimbriae encoded by the large plasmid of sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H(-). Infect. Immun. 69:4447-4457.
    • (2001) Infect. Immun. , vol.69 , pp. 4447-4457
    • Brunder, W.1    Khan, A.S.2    Hacker, J.3    Karch, H.4
  • 6
    • 0030813076 scopus 로고    scopus 로고
    • Phylogenetic relationships of Salmonella typhi and Salmonella typhimurium based on 16S rRNA sequence analysis
    • Chang, H. R., L. H. Loo, K. Jeyaseelan, L. Earnest, and E. Stackebrandt. 1997. Phylogenetic relationships of Salmonella typhi and Salmonella typhimurium based on 16S rRNA sequence analysis. Int. J. Syst. Bacteriol. 47:1253-1254.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1253-1254
    • Chang, H.R.1    Loo, L.H.2    Jeyaseelan, K.3    Earnest, L.4    Stackebrandt, E.5
  • 7
    • 0031745498 scopus 로고    scopus 로고
    • Phylogenetic relationships of Salmonella based on rRNA sequences
    • Christense, H., S. Nordentoft, and J. E. Olsen. 1998. Phylogenetic relationships of Salmonella based on rRNA sequences. Int. J. Syst. Bacteriol. 48:605-610.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 605-610
    • Christense, H.1    Nordentoft, S.2    Olsen, J.E.3
  • 8
    • 0030024243 scopus 로고    scopus 로고
    • Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
    • Cilia, V., B. Lafay, and R. Christen. 1996. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol. Biol. Evol. 13:451-461.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 451-461
    • Cilia, V.1    Lafay, B.2    Christen, R.3
  • 10
    • 0030003014 scopus 로고    scopus 로고
    • Determination of an effective sampling regime to detect Salmonella enteritidis in the environment of poultry units
    • Davies, R. H., and C. Wray. 1996. Determination of an effective sampling regime to detect Salmonella enteritidis in the environment of poultry units. Vet. Microbiol. 50:117-127.
    • (1996) Vet. Microbiol. , vol.50 , pp. 117-127
    • Davies, R.H.1    Wray, C.2
  • 11
    • 0028838764 scopus 로고
    • A novel gyrB mutation in a fluoroquinolone-resistant clinical isolate of Salmonella typhimurium
    • Gensberg, K., Y. F. Jin, and L. J. Piddock. 1995. A novel gyrB mutation in a fluoroquinolone-resistant clinical isolate of Salmonella typhimurium. FEMS Microbiol. Lett. 132:57-60.
    • (1995) FEMS Microbiol. Lett. , vol.132 , pp. 57-60
    • Gensberg, K.1    Jin, Y.F.2    Piddock, L.J.3
  • 12
    • 0032863441 scopus 로고    scopus 로고
    • Escherichia coli. EAEC, EHEC, EIEC, ETEC
    • Gilligan, P. H. 1999. Escherichia coli. EAEC, EHEC, EIEC, ETEC. Clin. Lab. Med. 19:505-521.
    • (1999) Clin. Lab. Med. , vol.19 , pp. 505-521
    • Gilligan, P.H.1
  • 13
    • 0026605537 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTAL V: Improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 14
    • 0028107305 scopus 로고
    • Sequence variation in Shigelia sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 years
    • Karaolis, D. K., R. Lan, and P. R. Reeves. 1994. Sequence variation in Shigelia sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 years. J. Clin. Microbiol. 32:796-802.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 796-802
    • Karaolis, D.K.1    Lan, R.2    Reeves, P.R.3
  • 16
    • 0029123044 scopus 로고
    • Relationship between evolutionary rate and cellular location among the Inv/Spa invasion proteins of Salmonella enterica
    • Li, J., H. Ochman, E. A. Groisman, E. F. Boyed, F. Solomon, K. Nelson, and R. K. Selander. 1995. Relationship between evolutionary rate and cellular location among the Inv/Spa invasion proteins of Salmonella enterica. Proc. Natl. Acad. Sci. USA 92:7252-7256.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7252-7256
    • Li, J.1    Ochman, H.2    Groisman, E.A.3    Boyed, E.F.4    Solomon, F.5    Nelson, K.6    Selander, R.K.7
  • 18
    • 0029831058 scopus 로고    scopus 로고
    • Confirmational identification of Escherichia coli, a comparison of genotypic and phenotypic assays for glutamate decarboxylase and β-D-glucuronidase
    • McDaniels, A. E., E. W. Rice, A. L. Reyes, C. H. Johnson, R. A. Haugland, and G. N. Stelma, Jr. 1996. Confirmational identification of Escherichia coli, a comparison of genotypic and phenotypic assays for glutamate decarboxylase and β-D-glucuronidase. Appl. Environ. Microbiol. 62:3350-3354.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3350-3354
    • McDaniels, A.E.1    Rice, E.W.2    Reyes, A.L.3    Johnson, C.H.4    Haugland, R.A.5    Stelma G.N., Jr.6
  • 19
    • 0025992890 scopus 로고
    • Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coli
    • Nelson, K., T. S. Whittam, and R. K. Selander. 1991. Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coli. Proc. Natl. Acad. Sci. USA 88:6667-6671.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 6667-6671
    • Nelson, K.1    Whittam, T.S.2    Selander, R.K.3
  • 20
    • 0028051326 scopus 로고
    • Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria
    • Nelson, K., and R. K. Selander. 1994. Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc. Natl. Acad. Sci. USA 91:10227-10231.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10227-10231
    • Nelson, K.1    Selander, R.K.2
  • 21
    • 0034641731 scopus 로고    scopus 로고
    • Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
    • Pupo, G. M., R. Lan, and P. R. Reeves. 2000. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc. Natl. Acad. Sci. USA 97:10567-10572.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 10567-10572
    • Pupo, G.M.1    Lan, R.2    Reeves, P.R.3
  • 22
    • 0024587441 scopus 로고
    • Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb. nov.
    • Reeves, M. W., G. M. Evins, A. A. Heiba, B. D. Plikaytis, and J. J. Farmer III. 1989. Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb. nov. J. Clin. Microbiol. 27:313-320.
    • (1989) J. Clin. Microbiol. , vol.27 , pp. 313-320
    • Reeves, M.W.1    Evins, G.M.2    Heiba, A.A.3    Plikaytis, B.D.4    Farmer J.J. III5
  • 23
    • 0032930778 scopus 로고    scopus 로고
    • Sequence diversity of flagellin (fliC) alleles in pathogenic Escherichia coli
    • Reid, S. D., R. K. Selander, and T. S. Whittam. 1999. Sequence diversity of flagellin (fliC) alleles in pathogenic Escherichia coli. J. Bacteriol. 181:153-160.
    • (1999) J. Bacteriol. , vol.181 , pp. 153-160
    • Reid, S.D.1    Selander, R.K.2    Whittam, T.S.3
  • 25
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees, Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 26
    • 0001213179 scopus 로고    scopus 로고
    • Evolutionary genetics of Salmonella enterica
    • F. C. Neidhardt et al. (ed.). American Society for Microbiology, Washington, D.C.
    • Selander, R. K., J. Li, and K. Nelson. 1996. Evolutionary genetics of Salmonella enterica, p. 2691-2707. In F. C. Neidhardt et al. (ed.), Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed., vol. 2. American Society for Microbiology, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , vol.2 , pp. 2691-2707
    • Selander, R.K.1    Li, J.2    Nelson, K.3
  • 27
    • 0027305615 scopus 로고
    • Evidence from Aeromonas for genetic crossing-over in ribosomal sequences
    • Sneath, P. H.1993. Evidence from Aeromonas for genetic crossing-over in ribosomal sequences. Int. J. Syst. Bacteriol. 43:626-629.
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 626-629
    • Sneath, P.H.1
  • 29
    • 0032407537 scopus 로고    scopus 로고
    • Relationship between O-serogroup and presence of pathogenic factor genes in Escherichia coli
    • Sunabe, T., and Y. Honma. 1998. Relationship between O-serogroup and presence of pathogenic factor genes in Escherichia coli. Microbiol. Immunol. 42:845-849.
    • (1998) Microbiol. Immunol. , vol.42 , pp. 845-849
    • Sunabe, T.1    Honma, Y.2
  • 30
    • 0030722947 scopus 로고    scopus 로고
    • Evolutionary genetics of the isocitrate dehydrogenase gene (icd) in Escherichia coli and Salmonella enterica
    • Wang, F. S., T. S. Whittam, and R. K. Selander. 1997. Evolutionary genetics of the isocitrate dehydrogenase gene (icd) in Escherichia coli and Salmonella enterica. J. Bacteriol. 179:6551-6559.
    • (1997) J. Bacteriol. , vol.179 , pp. 6551-6559
    • Wang, F.S.1    Whittam, T.S.2    Selander, R.K.3
  • 31
    • 0033811489 scopus 로고    scopus 로고
    • The Escherichia coli O111 and Salmonella enterica O35 gene clusters: Gene clusters encoding the same colitose-containing O antigen are highly conserved
    • Wang, L., and P. R. Reeves. 2000. The Escherichia coli O111 and Salmonella enterica O35 gene clusters: Gene clusters encoding the same colitose-containing O antigen are highly conserved. J. Bacteriol. 182:5256-5261.
    • (2000) J. Bacteriol. , vol.182 , pp. 5256-5261
    • Wang, L.1    Reeves, P.R.2
  • 32
    • 0034778552 scopus 로고    scopus 로고
    • Sequence analysis of four Shigella boydii O-antigen loci: Implication for Escherichia coli and Shigella relationships
    • Wang, L., W. Qu, and P. R. Reeves. 2001. Sequence analysis of four Shigella boydii O-antigen loci: Implication for Escherichia coli and Shigella relationships. Infect. Immun. 69:6923-6930.
    • (2001) Infect. Immun. , vol.69 , pp. 6923-6930
    • Wang, L.1    Qu, W.2    Reeves, P.R.3
  • 33
    • 0028227811 scopus 로고
    • A 16S rDNA-based PCR method for rapid and specific detection of Clostridium perftingens in food
    • Wang, R. F., W. W. Cao, and C. E. Cerniglia. 1994. A 16S rDNA-based PCR method for rapid and specific detection of Clostridium perftingens in food. Mol. Cell. Probes 8:131-137.
    • (1994) Mol. Cell. Probes , vol.8 , pp. 131-137
    • Wang, R.F.1    Cao, W.W.2    Cerniglia, C.E.3
  • 34
    • 0031410079 scopus 로고    scopus 로고
    • Phylogenetic analysis and identification of Shigella spp. by molecular probe
    • Wang, R. F., W. W. Cao, and C. E. Cerniglia. 1997. Phylogenetic analysis and identification of Shigella spp. by molecular probe. Mol. Cell. Probes 11:427-432.
    • (1997) Mol. Cell. Probes , vol.11 , pp. 427-432
    • Wang, R.F.1    Cao, W.W.2    Cerniglia, C.E.3
  • 35
    • 0035150403 scopus 로고    scopus 로고
    • Verocytotoxin-producing Escherichia coli (VTEC) O157 and other VTEC from human infections in England and Wales: 1995-1998
    • Willshaw, G. A., T. Cheasty, H. R. Smith, S. J. O'Brien, and K. Adak. 2001. Verocytotoxin-producing Escherichia coli (VTEC) O157 and other VTEC from human infections in England and Wales: 1995-1998. J. Med. Microbiol. 50:135-142.
    • (2001) J. Med. Microbiol. , vol.50 , pp. 135-142
    • Willshaw, G.A.1    Cheasty, T.2    Smith, H.R.3    O'Brien, S.J.4    Adak, K.5
  • 36
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto, S., and S. Harayama. 1995. PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl. Environ. Microbiol. 61:1104-1109.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2
  • 37
    • 0029863154 scopus 로고    scopus 로고
    • Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products
    • Yamamoto, S., and S. Harayama. 1996. Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products. Int. J. Syst. Bacteriol. 46:506-511.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 506-511
    • Yamamoto, S.1    Harayama, S.2
  • 38
    • 0031827993 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes
    • Yamamoto, S., and S. Harayama. 1998. Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int. J. Syst. Bacteriol. 3:813-819.
    • (1998) Int. J. Syst. Bacteriol. , vol.3 , pp. 813-819
    • Yamamoto, S.1    Harayama, S.2


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