16S-23S rDNA internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Fusobacterium

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 2, 2002, Pages 493-499

  Conrads, Georg ^a   Claros, Marina C ^a   Citron, Diane M ^a   Tyrrell, Kerin L ^a   Merriam, Vreni ^a   Goldstein, Ellie J C ^a  

^a R M ALDEN RESEARCH LABORATORY   (United States)

Author keywords

16S 23S rDNA internal transcribed spacer; Fusobacterium; Leptotrichia; Sebaldella; Streptobacillus

Indexed keywords

DNA 16S; INTERNAL TRANSCRIBED SPACER;

ARTICLE; BACTERIAL STRAIN; CONTROLLED STUDY; DNA SEQUENCE; EUBACTERIUM; FUSOBACTERIUM; FUSOBACTERIUM FUNDULIFORME; FUSOBACTERIUM GONIDAFORMANS; FUSOBACTERIUM MORTIFERUM; FUSOBACTERIUM NAVIFORME; FUSOBACTERIUM NECROPHORUM; FUSOBACTERIUM NUCLEATUM; FUSOBACTERIUM PERFOETENS; FUSOBACTERIUM PERIODONTICUM; FUSOBACTERIUM RUSSII; FUSOBACTERIUM SIMIAE; FUSOBACTERIUM ULCERANS; FUSOBACTERIUM VARIUM; GENETIC HETEROGENEITY; GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; STREPTOBACILLUS; SUBSPECIES; TAXON;

BACTERIA (MICROORGANISMS); FAECALIBACTERIUM PRAUSNITZII; FUSOBACTERIUM; FUSOBACTERIUM MORTIFERUM; FUSOBACTERIUM NAVIFORME; FUSOBACTERIUM NECROPHORUM; FUSOBACTERIUM NUCLEATUM; FUSOBACTERIUM PERFOETENS; FUSOBACTERIUM PERIODONTICUM; FUSOBACTERIUM RUSSII; FUSOBACTERIUM SIMIAE; FUSOBACTERIUM ULCERANS; FUSOBACTERIUM VARIUM; LEPTOTRICHIA; LEPTOTRICHIA BUCCALIS; NEGIBACTERIA; PROKARYOTA; SEBALDELLA; SEBALDELLA TERMITIDIS; SIMIAE; STREPTOBACILLUS; STREPTOBACILLUS MONILIFORMANS;

EID: 0036194336     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-52-2-493     Document Type: Article

References (23)

1. Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli ECOR collection
2. Fusobacteria: New taxonomy and related diseases
3. Sequence variation of the 16S to 23S rRNA spacer region in Salmonella enterica
4. Characteristics of Fusobacterium ulcerans, a new unusual species compared to Fusobacterium varium and Fusobacterium mortiferum
5. Identification of Fusobacterium species by the electrophoretic migration of glutamate dehydrogenase and 2-oxoglutarate reductase in relation to their DNA base composition and peptidoglycan dibasic amino acids
6. Fusobacterium nucleatum subsp. fusiforme subsp. nov. and Fusobacterium nucleatum subsp. animalis subsp. nov. as additional subspecies within Fusobacterium nucleatum
7. Activities of telithromycin (HMR 3647, RU 66647) compared to those of erythromycin, azithromycin, clarithromycin, roxithromycin, and other antimicrobial agents against unusual anaerobes
8. Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp.
9. Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species
10. The role of recombination and mutation in 16S-23S rDNA spacer rearrangements
11. DNA sequence heterogeneity in the three copies of the long 16S-23S rDNA spacer of Enterococcus faecalis isolates
12. Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria
13. Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: Proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov.
14. Multiple sequence alignment with CLUSTAL X
15. Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit rRNA
16. 16S-23S rDNA spacer of Pectinatus, Selenomonas and Zymophilus reveal new phylogenetic relationships between these genera
17. GeneDoc: A tool for editing and annotation of multiple sequence alignments
18. Ribotyping to differentiate Fusobacterium necrophorum subsp. necrophorum and F. necrophorum subsp. funduliforme isolated from bovine ruminal contents and liver abscesses
19. Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies
20. Proposal of two subspecies of Fusobacterium necrophorum (Flügge) Moore and Holdeman: Fusobacterium necrophorum subsp. necrophorum subsp. nov., nom. rev. (ex Flügge 1886), and Fusobacterium necrophorum subsp. nov., nom. rev. (ex Hallé 1898)
21. Differentiation of newly described Antarctic bacterial isolates related to Roseobacter species based on 16S-23S rDNA internal transcribed spacer sequences
22. Phylogenetic analysis of Fusobacterium prausnitzii based upon the 16S rRNA gene sequence and PCR confirmation