Gene expression of commensal Lactobacillus johnsonii strain NCC533 during in vitro growth and in the murine gut

Journal of Bacteriology

Volumn 189, Issue 22, 2007, Pages 8109-8119

  Denou, Emmanuel ^a,b   Berger, Bernard ^a   Barretto, Caroline ^a   Panoff, Jean Michel ^b   Arigoni, Fabrizio ^a   Brüssow, Harald ^a  

^a NESTLÉ RESEARCH CENTER   (Switzerland)

^b UNIVERSITÉ DE CAEN   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BACTERIAL GROWTH; CELL COUNT; CELL VIABILITY; COMMENSAL; CONTROLLED STUDY; DNA REPLICATION; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENOME; INTESTINE FLORA; LACTOBACILLUS JOHNSONII; MICROARRAY ANALYSIS; MOUSE; NONHUMAN; PRIORITY JOURNAL;

ANIMALS; GASTROINTESTINAL TRACT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; LACTOBACILLUS; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TRANSCRIPTION, GENETIC;

LACTOBACILLUS; LACTOBACILLUS JOHNSONII; MURINAE; MUS; VIBRIO CHOLERAE;

EID: 36549004621     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00991-07     Document Type: Article

References (47)

1. Altermann, E., W. M. Russell, M. A. Azcarate-Peril, R. Barrangou, B. L. Buck, O. McAuliffe, N. Souther, A. Dobson, T. Duong, M. Callanan, S. Lick, A. Hamrick, R. Cano, and T. R. Klaenhammer. 2005. Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc. Natl. Acad. Sci. USA 102:3906-3912.
2. Amit-Romach, E., D. Sklan, and Z. Uni. 2004. Microflora ecology of the chicken intestine using 16S ribosomal DNA primers. Poult. Sci. 83:1093-1098.
3. Bateup, J. M., M. A. McConnell, H. F. Jenkinson, and G. W. Tannock. 1995. Comparison of Lactobacillus strains with respect to bile salt hydrolase activity, colonization of the gastrointestinal tract, and growth rate of the murine host. Appl. Environ. Microbiol. 61:1147-1149.
4. Berger, B., R. D. Pridmore, C. Barretto, F. Delmas-Julien, K. Schreiber, F. Arigoni, and H. Brüssow. 2007. Similarity and differences in the Lactobacillus acidophilus group identified by polyphasic analysis and comparative genomics. J. Bacteriol. 189:1311-1321.
5. Bergonzelli, G. E., S. Blum, H. Brüssow, and I. Corthésy-Theulaz. 2005. Probiotics as a treatment strategy for gastrointestinal diseases? Digestion 72:57-68.
6. Bron, P. A., C. Grangette, A. Mercenier, W. M. de Vos, and M. Kleerebezem. 2004. Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J. Bacteriol. 186:5721-5729.
7. Casey, P. G., G. D. Casey, G. E. Gardiner, M. Tangney, C. Stanton, R. P. Ross, C. Hill, and G. F. Fitzgerald. 2004. Isolation and characterization of anti-Salmonella lactic acid bacteria from the porcine gastrointestinal tract. Lett. Appl. Microbiol. 39:431-438.
8. Castillo, M., S. M. Martin-Orue, E. G. Manzanilla, I. Badiola, M. Martin, and J. Gasa. 2006. Quantification of total bacteria, enterobacteria and lactobacilli populations in pig digesta by real-time PCR. Vet. Microbiol. 114: 165-170.
9. Chaillou, S., M. C. Champomier-Verges, M. Cornet, A. M. Crutz-Le Coq, A. M. Dudez, V. Martin, S. Beaufils, E. Darbon-Rongere, R. Bossy, V. Loux, and M. Zagorec. 2005. The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nat. Biotechnol. 23:1527-1533.
10. Chang, D. E., D. J. Smalley, D. L. Tucker, M. P. Leatham, W. E. Norris, S. J. Stevenson, A. B. Anderson, J. E. Grissom, D. C. Laux, P. S. Cohen, and T. Conway. 2004. Carbon nutrition of Escherichia coli in the mouse intestine. Proc. Natl. Acad. Sci. USA 101:7427-7432.
11. Dellagio, F., and G. E. Felis. 2005. Taxonomy of lactobacilli and bifidobacteria, p. 25-49. In G. W. Tannock (ed.), Probiotics and prebiotics: scientific aspects. Caister Academic Press, Norfolk, United Kingdom.
12. Denou, E. 2006. From genes to transcripts to phenotypes: preliminary characterization of commensalism with Lactobacillus, Bifidobacterium and Escherichia coli in the murine gut. Ph.D. thesis. University of Caen, Caen, France.
13. Drouault, S., J. Anba, and G. Corthier, 2002. Streptococcus thermophilus is able to produce a beta-galactosidase active during its transit in the digestive tract of germ-free mice. Appl. Environ. Microbiol. 68:938-941.
14. Egert, M., A. A. de Graaf, H. Smidt, W. M. de Vos, and K. Venema. 2006. Beyond diversity: functional microbiomics of the human colon. Trends Microbiol. 14:86-91.
15. Freter, R., E. Stauffer, D. Cleven, L. V. Holdeman, and W. E. Moore. 1983. Continuous-flow cultures as in vitro models of the ecology of large intestinal flora. Infect. Immun. 39:666-675.
16. Guan, L. L., K. E. Hagen, G. W. Tannock, D. R. Korver, G. M. Fasenko, and G. E. Allison. 2003. Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis. Appl. Environ. Microbiol. 69:6750-6757.
17. Kaplan, C. W., J. C. Astaire, M. E. Sanders, B. S. Reddy, and C. L. Kitts. 2001. 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 67:1935-1939.
18. Klaenhammer, T. R., R. Barrangou, B. L. Buck, M. A. Azcarate-Peril, and E. Altermann. 2005. Genomic features of lactic acid bacteria effecting bioprocessing and health. FEMS Microbiol. Rev. 29:393-409.
19. Kleerebezem, M., J. Boekhorst, R. van Kranenburg, D. Molenaar, O. P. Kuipers, R. Leer, R. Tarchini, S. A. Peters, H. M. Sandbrink, M. W. Fiers, W. Stiekema, R. M. Lankhorst, P. A. Bron, S. M. Hoffer, M. N. Groot, R. Kerkhoven, M. de Vries, B. Ursing, W. M. de Vos, and R. J. Siezen. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. USA 100:1990-1995.
20. Klijn, A. W. P. E. 2005. Physiological and molecular characterisation of stress responses in Bifidobacterium longum NCC 2705. Ph.D. thesis. University College Cork, Cork, Ireland.
21. Krogfelt, K. A., L. K. Poulsen, and S. Molin. 1993. Identification of coccoid Escherichia coli BJ4 cells in the large intestine of streptomycin-treated mice. Infect. Immun. 61:5029-5034.
22. Kruis, W., P. Fric, J. Pokrotnieks, M. Lukas, B. Fixa, M. Kascak, M. A. Kamm, J. Weismueller, C. Beglinger, M. Stolte, C. Wolff, and J. Schulze. 2004. Maintaining remission of ulcerative colitis with the probiotic Escherichia coli Nissle 1917 is as effective as with standard mesalazine. Gut 53: 1617-1623.
23. Kuipers, O. P., M. M. Beerthuyzen, R. J. Siezen, and W. M. de Vos. 1993. Characterization of the nisin gene cluster nisABTCIPR of Lactococcus lactis. Requirement of expression of the nisA and nisI genes for development of immunity. Eur. J. Biochem. 216:281-291.
24. Ley, R. E., D. A. Peterson, and J. I. Gordon. 2006. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124:837-848.
25. Lievin-Le Moal, V., and A. L. Servin. 2006. The front line of enteric host defense against unwelcome intrusion of harmful microorganisms: mucins, antimicrobial peptides, and microbiota. Clin. Microbiol. Rev. 19:315-337.
26. Marco, M. L., R. S. Bongers, W. M. de Vos, and M. Kleerebezem. 2007. Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tracts of mice. Appl. Environ. Microbiol. 73:124-132.
27. Merrell, D. S., S. M. Butler, F. Qadri, N. A. Dolganov, A. Alam, M. B. Cohen, S. B. Calderwood, G. K. Schoolnik, and A. Camilli. 2002. Host-induced epidemic spread of the cholera bacterium. Nature 417:642-645.
28. Norin, K. E., A. K. Persson, H. Saxerholt, and T. Midtvedt. 1991. Establishment of Lactobacillus and Bifidobacterium species in germfree mice and their influence on some microflora-associated characteristics. Appl. Environ. Microbiol. 57:1850-1852.
29. Pedersen, K., and G. W. Tannock. 1989. Colonization of the porcine gastrointestinal tract by lactobacilli. Appl. Environ. Microbiol. 55:279-283.
30. Pena, J. A., S. Y. Li, P. H. Wilson, S. A. Thibodeau, A. J. Szary, and J. Versalovic. 2004. Genotypic and phenotypic studies of murine intestinal lactobacilli: species differences in mice with and without colitis. Appl. Environ. Microbiol. 70:558-568.
31. Petry, S., S. Furlan, M. J. Crepeau, J. Cerning, and M. Desmazeaud. 2000. Factors affecting exocellular polysaccharide production by Lactobacillus delbrueckii subsp. bulgaricus grown in a chemically defined medium. Appl. Environ. Microbiol. 66:3427-3431.
32. Pridmore, R. D., B. Berger, F. Desiere, D. Vilanova, C. Barretto, A. C. Pittet, M. C. Zwahlen, M. Rouvet, E. Altermann, R. Barrangou, B. Mollet, A. Mercenier, T. Klaenhammer, F. Arigoni, and M. A. Schell. 2004. The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc. Natl. Acad. Sci. USA 101:2512-2517.
33. Roach, S., D. C. Savage, and G. W. Tannock. 1977. Lactobacilli isolated from the stomach of conventional mice. Appl. Environ. Microbiol. 33: 1197-1203.
34. Schell, M. A., M. Karmirantzou, B. Snel, D. Vilanova, B. Berger, G. Pessi, M. C. Zwahlen, F. Desiere, P. Bork, M. Delley, R. D. Pridmore, and F. Arigoni. 2002. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. USA 99:14422-14427.
35. Snyder, J. A., B. J. Haugen, E. L. Buckles, C. V. Lockatell, D. E. Johnson, M. S. Donnenberg, R. A. Welch, and H. L. Mobley. 2004. Transcriptome of uropathogenic Escherichia coli during urinary tract infection. Infect. Immun. 72:6373-6381.
36. Sonnenburg, J. L., C. T. Chen, and J. I. Gordon. 2006. Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol. 4:e413.
37. Sonnenburg, J. L., J. Xu, D. D. Leip, C. H. Chen, B. P. Westover, J. Weatherford, J. D. Buhler, and J. I. Gordon. 2005. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307:1955-1959.
38. Stiles, M. E., and W. H. Holzapfel. 1997. Lactic acid bacteria of foods and their current taxonomy. Int. J. Food Microbiol. 36:1-29.
39. Stintzi, A., D. Marlow, K. Palyada, H. Naikare, R. Panciera, L. Whitworth, and C. Clarke. 2005. Use of genome-wide expression profiling and mutagenesis to study the intestinal lifestyle of Campylobacter jejuni. Infect. Immun. 73:1797-1810.
40. Szymanski, H., J. Pejcz, M. Jawien, A. Chmielarczyk, M. Strus, and P. B. Heczko. 2006. Treatment of acute infectious diarrhoea in infants and children with a mixture of three Lactobacillus rhamnosus strains - a randomized, double-blind, placebo-controlled trial. Aliment. Pharmacol. Ther. 23: 247-253.
41. Tannock, G. W. 2004. A special fondness for lactobacilli. Appl. Environ. Microbiol. 70:3189-3194.
42. Tannock, G. W. 2005. Probiotics and prebiotics. Caister Academic Press, Norfolk, United Kingdom.
43. Tannock, G. W., O. Szylit, Y. Duval, and P. Raibaud. 1982. Colonization of tissue surfaces in the gastrointestinal tract of gnotobiotic animals by lactobacillus strains. Can. J. Microbiol. 28:1196-1198.
44. van de Guchte, M., S. Penaud, C. Grimaldi, V. Barbe, K. Bryson, P. Nicolas, C. Robert, S. Oztas, S. Mangenot, A. Couloux, V. Loux, R. Dervyn, R. Bossy, A. Bolotin, J. M. Batto, T. Walunas, J. F. Gibrat, P. Bessieres, J. Weissenbach, S. D. Ehrlich, and E. Maguin. 2006. The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc. Natl. Acad. Sci. USA 103:9274-9279.
45. Vaughan, E. E., H. G. Heilig, K. Ben Amor, and W. M. de Vos. 2005. Diversity, vitality and activities of intestinal lactic acid bacteria and bifidobacteria assessed by molecular approaches. FEMS Microbiol. Rev. 29:477-490.
46. Walter, J., N. C. Heng, W. P. Hammes, D. M. Loach, G. W. Tannock, and C. Hertel. 2003. Identification of Lactobacillus reuteri genes specifically induced in the mouse gastrointestinal tract. Appl. Environ. Microbiol. 69:2044-2051.
47. Xu, Q., M. Dziejman, and J. J. Mekalanos. 2003. Determination of the transcriptome of Vibrio cholerae during intraintestinal growth and midexponential phase in vitro. Proc. Natl. Acad. Sci. USA 100:1286-1291.