-
1
-
-
29344433275
-
Intragenomic nucleotide polymorphism among small subunit (18S) rDNA paralogs in the diatom genus Skeletonema (Bacillariophyta)
-
Alverson, A. J. & Kolnick, L. (2005). Intragenomic nucleotide polymorphism among small subunit (18S) rDNA paralogs in the diatom genus Skeletonema (Bacillariophyta). J Phycol 41, 1248-1257.
-
(2005)
J Phycol
, vol.41
, pp. 1248-1257
-
-
Alverson, A.J.1
Kolnick, L.2
-
2
-
-
0033515041
-
An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
-
Asai, T., Zaporojets, D., Squires, C. & Squires, C. L. (1999). An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc Natl Acad Sci U S A 96, 1971-1976.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 1971-1976
-
-
Asai, T.1
Zaporojets, D.2
Squires, C.3
Squires, C.L.4
-
3
-
-
8744235102
-
-
Baliga, N. S., Bonneau, R., Facciotti, M. T., Pan, M., Glusman, G., Deutsch, E. W., Shannon, P., Chiu, Y., Weng, R. S. & other authors (2004). Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res 14, 2221-2234.
-
Baliga, N. S., Bonneau, R., Facciotti, M. T., Pan, M., Glusman, G., Deutsch, E. W., Shannon, P., Chiu, Y., Weng, R. S. & other authors (2004). Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res 14, 2221-2234.
-
-
-
-
4
-
-
2942545812
-
Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes
-
Boucher, Y., Douady, C. J., Sharma, A. K., Kameoka, M. & Doolittle, W. F. (2004). Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes. J Bacteriol 186, 3980-3990.
-
(2004)
J Bacteriol
, vol.186
, pp. 3980-3990
-
-
Boucher, Y.1
Douady, C.J.2
Sharma, A.K.3
Kameoka, M.4
Doolittle, W.F.5
-
5
-
-
0031135337
-
Recombinant DNA sequences generated by PCR amplification
-
Bradley, R. D. & Hillis, D. M. (1997). Recombinant DNA sequences generated by PCR amplification. Mol Biol Evol 14, 592-593.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 592-593
-
-
Bradley, R.D.1
Hillis, D.M.2
-
6
-
-
0031035491
-
The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
-
Buckler, E. S., IV, Ippolito, A. & Holtsford, T. P. (1997). The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145, 821-832.
-
(1997)
Genetics
, vol.145
, pp. 821-832
-
-
Buckler, E.S.I.1
Ippolito, A.2
Holtsford, T.P.3
-
7
-
-
0029955186
-
Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida)
-
Carranza, S., Giribet, G., Ribera, C., Baguña, J. & Riutort, M. (1996). Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida). Mol Biol Evol 13, 824-832.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 824-832
-
-
Carranza, S.1
Giribet, G.2
Ribera, C.3
Baguña, J.4
Riutort, M.5
-
8
-
-
0034062570
-
-
Cubero, O. F., Bridge, P. D. & Crespo, A. (2000). Terminal-sequence conservation identifies spliceosomal introns in ascomycete 18S rRNA genes. Mol Biol Evol 17, 751-756.
-
Cubero, O. F., Bridge, P. D. & Crespo, A. (2000). Terminal-sequence conservation identifies spliceosomal introns in ascomycete 18S rRNA genes. Mol Biol Evol 17, 751-756.
-
-
-
-
9
-
-
0025900454
-
A self-splicing group I intron in the nuclear pre-rRNA of the green alga
-
Dávila-Aponte, J. A., Huss, V. A. R., Sogin, M. L. & Cech, T. R. (1991). A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus. Nucleic Acids Res 19, 4429-4436.
-
(1991)
Ankistrodesmus stipitatus. Nucleic Acids Res
, vol.19
, pp. 4429-4436
-
-
Dávila-Aponte, J.A.1
Huss, V.A.R.2
Sogin, M.L.3
Cech, T.R.4
-
10
-
-
24344510265
-
Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: Implications for phylogenetic inference and systematics
-
Dewhirst, F. E., Shen, Z., Scimeca, M. S., Stokes, L. N., Boumenna, T., Chen, T., Paster, B. J. & Fox, J. G. (2005). Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics. J Bacteriol 187, 6106-6118.
-
(2005)
J Bacteriol
, vol.187
, pp. 6106-6118
-
-
Dewhirst, F.E.1
Shen, Z.2
Scimeca, M.S.3
Stokes, L.N.4
Boumenna, T.5
Chen, T.6
Paster, B.J.7
Fox, J.G.8
-
11
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J. S., Källersjö, M., Kluge, A. G. & Bult, C. (1994). Testing significance of incongruence. Cladistics 10, 315-319.
-
(1994)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Källersjö, M.2
Kluge, A.G.3
Bult, C.4
-
12
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
13
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Felsenstein, J. (1988). Phylogenies from molecular sequences: inference and reliability. Annu Rev Genet 22, 521-565.
-
(1988)
Annu Rev Genet
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
14
-
-
0036898759
-
Prokaryotic evolution in light of gene transfer
-
Gogarten, J. P., Doolittle, W. F. & Lawrence, J. G. (2002). Prokaryotic evolution in light of gene transfer. Mol Biol Evol 19, 2226-2238.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2226-2238
-
-
Gogarten, J.P.1
Doolittle, W.F.2
Lawrence, J.G.3
-
15
-
-
0023616128
-
Structurally distinct, stage-specific ribosomes occur in Plasmodium
-
Gunderson, J. H., Sogin, M. L., Wollett, G., Hollingdale, M., De La Cruz, V. F., Waters, A. P. & McCutchan, T. F. (1987). Structurally distinct, stage-specific ribosomes occur in Plasmodium. Science 238, 933-937.
-
(1987)
Science
, vol.238
, pp. 933-937
-
-
Gunderson, J.H.1
Sogin, M.L.2
Wollett, G.3
Hollingdale, M.4
De La Cruz, V.F.5
Waters, A.P.6
McCutchan, T.F.7
-
16
-
-
0026063996
-
Evidence for biased gene conservation in concerted evolution of ribosomal DNA
-
Hillis, D. M., Moritz, C., Porter, C. A. & Baker, R. J. (1991). Evidence for biased gene conservation in concerted evolution of ribosomal DNA. Science 251, 308-310.
-
(1991)
Science
, vol.251
, pp. 308-310
-
-
Hillis, D.M.1
Moritz, C.2
Porter, C.A.3
Baker, R.J.4
-
17
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
18
-
-
0036395090
-
Distribution of rRNA introns in the three-dimensional structure of the ribosome
-
Jackson, S. A., Cannone, J. J., Lee, J. C., Gutell, R. R. & Woodson, S. A. (2002). Distribution of rRNA introns in the three-dimensional structure of the ribosome. J Mol Biol 323, 35-52.
-
(2002)
J Mol Biol
, vol.323
, pp. 35-52
-
-
Jackson, S.A.1
Cannone, J.J.2
Lee, J.C.3
Gutell, R.R.4
Woodson, S.A.5
-
19
-
-
0033616714
-
Horizontal gene transfer among genomes: The complexity hypothesis
-
Jain, R., Rivera, M. C. & Lake, J. A. (1999). Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci U S A 96, 3801-3806.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 3801-3806
-
-
Jain, R.1
Rivera, M.C.2
Lake, J.A.3
-
20
-
-
0030924389
-
Variable regions V13 and V3 of Saccharomyces cerevisiae contain structural features essential for normal biogenesis and stability of 5.8S and 25S rRNA
-
Jeeninga, R. E., Van Delft Y., de Graaff-Vincent, M., Dirks-Mulder, A., Venema, J. & Raue, H. A. (1997). Variable regions V13 and V3 of Saccharomyces cerevisiae contain structural features essential for normal biogenesis and stability of 5.8S and 25S rRNA. RNA 3, 476-488.
-
(1997)
RNA
, vol.3
, pp. 476-488
-
-
Jeeninga, R.E.1
Van Delft, Y.2
de Graaff-Vincent, M.3
Dirks-Mulder, A.4
Venema, J.5
Raue, H.A.6
-
21
-
-
0022981322
-
Nucleolytic processing of ribonucleic acid transcripts in prokaryotes
-
King, T. C., Sirdeskmukh, R. & Schlessinger, D. (1986). Nucleolytic processing of ribonucleic acid transcripts in prokaryotes. Microbiol Rev 50, 428-451.
-
(1986)
Microbiol Rev
, vol.50
, pp. 428-451
-
-
King, T.C.1
Sirdeskmukh, R.2
Schlessinger, D.3
-
22
-
-
0036967150
-
Evidence of multiple alleles of the nuclear 18S ribosomal RNA gene in sturgeon (Family: Acipenseridae)
-
Krieger, J. & Fuerst, P. A. (2002). Evidence of multiple alleles of the nuclear 18S ribosomal RNA gene in sturgeon (Family: Acipenseridae). J Appl Ichthyol 18, 290-297.
-
(2002)
J Appl Ichthyol
, vol.18
, pp. 290-297
-
-
Krieger, J.1
Fuerst, P.A.2
-
23
-
-
10944261794
-
Characterization of nuclear 18S rRNA gene sequence diversity and expression in an individual lake sturgeon (Acipenser fulvescens)
-
Krieger, J. & Fuerst, P. A. (2004). Characterization of nuclear 18S rRNA gene sequence diversity and expression in an individual lake sturgeon (Acipenser fulvescens). J Appl Ichthyol 20, 433-439.
-
(2004)
J Appl Ichthyol
, vol.20
, pp. 433-439
-
-
Krieger, J.1
Fuerst, P.A.2
-
24
-
-
33745664513
-
Unusual intraindividual variation of the nuclear 18S rRNA gene is widespread within the Acipenseridae
-
Krieger, J., Hett, A. K., Fuerst, P. A., Birstein, V. J. & Ludwig, A. (2006). Unusual intraindividual variation of the nuclear 18S rRNA gene is widespread within the Acipenseridae. J Hered 97, 218-225.
-
(2006)
J Hered
, vol.97
, pp. 218-225
-
-
Krieger, J.1
Hett, A.K.2
Fuerst, P.A.3
Birstein, V.J.4
Ludwig, A.5
-
25
-
-
0018814593
-
Repeated genes in eukaryotes
-
Long, E. O. & Dawid, I. B. (1980). Repeated genes in eukaryotes. Annu Rev Biochem 49, 727-764.
-
(1980)
Annu Rev Biochem
, vol.49
, pp. 727-764
-
-
Long, E.O.1
Dawid, I.B.2
-
26
-
-
0038805591
-
Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure
-
Marin, B., Palm, A., Klingberg, M. & Melkonian, M. (2003). Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure. Protist 154, 99-145.
-
(2003)
Protist
, vol.154
, pp. 99-145
-
-
Marin, B.1
Palm, A.2
Klingberg, M.3
Melkonian, M.4
-
27
-
-
0019878033
-
The primary structure of oocyte and somatic 5S rRNAs from the loach Misgurnus fossilis
-
Mashkova, T. D., Serenkova, T. L., Mazo, A. M., Avdonina, T. A., Timofeyeva, Y. & Kisselev, L. L. (1981). The primary structure of oocyte and somatic 5S rRNAs from the loach Misgurnus fossilis. Nucleic Acids Res 9, 2141-2151.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 2141-2151
-
-
Mashkova, T.D.1
Serenkova, T.L.2
Mazo, A.M.3
Avdonina, T.A.4
Timofeyeva, Y.5
Kisselev, L.L.6
-
28
-
-
0036199914
-
A coalescent-based method for detecting and estimating recombination rates from gene sequences
-
McVean, G., Awadalla, P. & Fearnhead, P. (2002). A coalescent-based method for detecting and estimating recombination rates from gene sequences. Genetics 160, 1231-1241.
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
McVean, G.1
Awadalla, P.2
Fearnhead, P.3
-
29
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
McVean, G. A. T., Myers, S., Hunt S., Deloukas, P., Bentley, D. & Donnelly, P. (2004). The fine-scale structure of recombination rate variation in the human genome. Science 304, 581-584.
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
McVean, G.A.T.1
Myers, S.2
Hunt, S.3
Deloukas, P.4
Bentley, D.5
Donnelly, P.6
-
30
-
-
14144251065
-
Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene
-
Miller, S. R., Augustine, S., Olson, T. L., Blankenship, R. E., Selker, J. & Wood, A. M. (2005). Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene. Proc Natl Acad Sci U S A 102, 850-855.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 850-855
-
-
Miller, S.R.1
Augustine, S.2
Olson, T.L.3
Blankenship, R.E.4
Selker, J.5
Wood, A.M.6
-
31
-
-
0026602645
-
Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui
-
Mylvaganam, S. & Dennis, P. P. (1992). Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. Genetics 130, 399-410.
-
(1992)
Genetics
, vol.130
, pp. 399-410
-
-
Mylvaganam, S.1
Dennis, P.P.2
-
32
-
-
0014428721
-
Hybrid 30S ribosomal particles reconstituted from components of different bacterial origins
-
Nomura, M., Traub, P. & Bechmann, H. (1968). Hybrid 30S ribosomal particles reconstituted from components of different bacterial origins. Nature 219, 793-799.
-
(1968)
Nature
, vol.219
, pp. 793-799
-
-
Nomura, M.1
Traub, P.2
Bechmann, H.3
-
33
-
-
0002987147
-
Prototheca, a yeastlike alga
-
Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier
-
Pore, R. S. (1998). Prototheca, a yeastlike alga. In The Yeasts, a Taxonomic Study, pp. 881-887. Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier.
-
(1998)
The Yeasts, a Taxonomic Study
, pp. 881-887
-
-
Pore, R.S.1
-
34
-
-
0032766857
-
Multiple comparisons of log-likelihoods with application to phylogenetic inference
-
Shimodaira, H. & Hasegawa, M. (1999). Multiple comparisons of log-likelihoods with application to phylogenetic inference. Mol Biol Evol 16, 1114-1116.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
35
-
-
0028303179
-
An rRNA variable region has an evolutionarily conserved essential role despite sequence divergence
-
Sweeney, R., Chen, L. & Yao, M. C. (1994). An rRNA variable region has an evolutionarily conserved essential role despite sequence divergence. Mol Cell Biol 14, 4203-4215.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 4203-4215
-
-
Sweeney, R.1
Chen, L.2
Yao, M.C.3
-
36
-
-
0029737347
-
Antisense ribosomes: RRNA as a vehicle for antisense RNAs
-
Sweeney, R., Fan, O. & Yao, M. C. (1996). Antisense ribosomes: rRNA as a vehicle for antisense RNAs. Proc Natl Acad Sci U S A 93, 8518-8523.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 8518-8523
-
-
Sweeney, R.1
Fan, O.2
Yao, M.C.3
-
37
-
-
36448964616
-
-
Swofford, D. L, 2002, PAUP*, Phylogenetic Analysis Using Parsimony *and other methods, version 4.0b10. Sunderland, MA: Sinauer Associates
-
Swofford, D. L. (2002). PAUP* - Phylogenetic Analysis Using Parsimony (*and other methods), version 4.0b10. Sunderland, MA: Sinauer Associates.
-
-
-
-
38
-
-
0032902755
-
Two distinct mechanisms cause heterogeneity of 16S rRNA
-
Ueda, K., Seki, T., Kudo, T., Yoshida, T. & Kataoka, M. (1999). Two distinct mechanisms cause heterogeneity of 16S rRNA. J Bacteriol 181, 78-82.
-
(1999)
J Bacteriol
, vol.181
, pp. 78-82
-
-
Ueda, K.1
Seki, T.2
Kudo, T.3
Yoshida, T.4
Kataoka, M.5
-
39
-
-
29344467459
-
Molecular phylogeny and phenotypic variation in the heterotrophic green algal genus Prototheca (Trebouxiophyceae, Chlorophyta)
-
Ueno, R., Hanagata, N., Urano, N. & Suzuki, M. (2005). Molecular phylogeny and phenotypic variation in the heterotrophic green algal genus Prototheca (Trebouxiophyceae, Chlorophyta). J Phycol 41, 1268-1280.
-
(2005)
J Phycol
, vol.41
, pp. 1268-1280
-
-
Ueno, R.1
Hanagata, N.2
Urano, N.3
Suzuki, M.4
-
40
-
-
0033709697
-
Comparative sequence analyses reveal frequent occurrence of short segments containing an abnormally high number of non-random base variations in bacterial rRNA genes
-
Wang, Y. & Zhang, Z. (2000). Comparative sequence analyses reveal frequent occurrence of short segments containing an abnormally high number of non-random base variations in bacterial rRNA genes. Microbiology 146, 2845-2854.
-
(2000)
Microbiology
, vol.146
, pp. 2845-2854
-
-
Wang, Y.1
Zhang, Z.2
-
41
-
-
0030977047
-
The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
-
Wang, Y., Zhang, Z. & Ramanan, N. (1997). The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J Bacteriol 179, 3270-3276.
-
(1997)
J Bacteriol
, vol.179
, pp. 3270-3276
-
-
Wang, Y.1
Zhang, Z.2
Ramanan, N.3
-
42
-
-
0034554835
-
Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
-
Wuyts, J., De Rijk, P., Van de Peer, Y., Pison, G., Rousseeuw, P. & De Wachter, R. (2000). Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28, 4698-4708.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4698-4708
-
-
Wuyts, J.1
De Rijk, P.2
Van de Peer, Y.3
Pison, G.4
Rousseeuw, P.5
De Wachter, R.6
-
43
-
-
0032835111
-
Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon
-
Yap, W. H., Zhang, Z. & Wang, Y. (1999). Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. J Bacteriol 181, 5201-5209.
-
(1999)
J Bacteriol
, vol.181
, pp. 5201-5209
-
-
Yap, W.H.1
Zhang, Z.2
Wang, Y.3
|