Evidence of multiple alleles of the nuclear 18S ribosomal RNA gene in sturgeon (Family: Acipenseridae)

Journal of Applied Ichthyology

Volumn 18, Issue 4-6, 2002, Pages 290-297

  Krieger, J ^a   Fuerst, P A ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; EVOLUTION; PHYLOGENY; RNA;

ACIPENSERIDAE; ACIPENSERIFORMES; AMIA CALVA; ERPETOICHTHYS CALABARICUS; EUKARYOTA; POLYODON SPATHULA; POLYPTERIDAE; SPATHULA;

EID: 0036967150     PISSN: 01758659     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0426.2002.00377.x     Document Type: Article

References (48)

1. Appels, R.; Gerlach, W. L.; Dennis, E. S.; Swift, H.; Peacock, W. J., 1980: Molecular and chromosomal organization of DNA sequences coding for the ribosomal RNAs in cereals. Chromosoma 78, 293-311.
2. Arnheim, N., 1983: Concerted evolution of multigene families. In: Evolution of genes and proteins. M. Nei and R. K. Koehn (Eds.). Sinauer, Sunderland, Mass. pp. 38-61.
3. Arnheim, N.; Krystal, M.; Schmickel, R.; Wilson, G.; Ryder, O.; Zimmer, E., 1980: Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes. Proc. Natl. Acad. Sci. USA 77, 7323-7327.
4. Arnheim, N.; Treco, D.; Taylor, B.; Eicher, E. M., 1982: Distribution of ribosomal gene length variants among mouse chromosomes. Proc. Natl. Acad. Sci. USA 79(15), 4677-4680.
5. Bemis, W. E.; Findeis, E. K.; Grande, L., 1997: An overview of Acipenseriformes. Environ. Biol. Fish. 48, 25-71.
6. Benevolenskaya, E. V.; Kogan, G. L.; Tulin, A. V.; Phillip, D.; Gvozdev, V. A., 1997: Segmented gene conversion as a mechanism of correction of 18S rRNA pseudogene located outside of rDNA cluster in D. melanogaster. J. Mol. Evol. 44, 646-651.
7. Birstein, V. J.; Vasiliev, V. P., 1987: Tetraploid-octoploid relationships and karyological evolution in the order Acipenseriformes (Pisces): Karyotypes, nucleoli, and nucleolus-organizer regions in four acipenserid species. Genetica 72, 3-12.
8. Birstein, V. J.; Poletaev, A. I.; Goncharov, B. F., 1993: DNA content in Eurasian sturgeon species determined by flow cytometry. Cytometry 14, 377-383.
9. Blacklidge, K. H.; Bidwell, C. A., 1993: Three ploidy levels indicated by genome quantification in Acipenseriformes of North America. J. Hered. 84, 427-430.
10. Brownell, E.; Krystal, M.; Arnheim, N., 1983: Structure and evolution of human and African ape rDNA pseudogenes. Mol. Biol. Evol. 1(1), 29-37.
11. Buckler, E. S., IV; Ippolito, A.; Holtsford, T. P., 1997: The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications. Genetics 145, 821-832.
12. Cabot, E. L.; Beckenbach, A. T., 1989: Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. Comput. Appl. Biosci. 5, 233-234.
13. Campbell, C. S.; Wojciechowski, M. F.; Baldwin, B. G.; Alice, L. A.; Donoghue, M. J., 1997: Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol. Biol. Evol. 14, 81-90.
14. Carranza, S.; Giribet, G.; Ribera, C.; Bagunà, J.; Riutort, M., 1996: Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida). Mol. Biol. Evol. 13(6), 824-832.
15. Carranza, S.; Bagunà, J.; Riutort, M., 1999: Origin and evolution of paralogous rRNA gene clusters within the flatworm family Dugesiidae (Platyhelminthes, Tricladida). J. Mol. Evol. 49(2), 250-259.
16. Dame, J. B.; Sullivan, M.; McCutchan, T. F., 1984: Two major sequence classes of ribosomal RNA genes in Plasmodium berghei. Nuc. Acid. Res. 12(14), 5943-5952.
17. Dingerkus, G.; Howell, W. M., 1976: Karyotypic analysis and evidence of tetraploidy in the North American paddlefish. Polyodon spathula. Science 194, 842-843.
18. Dover, G.; Brown, S.; Coen, E.; Dallas, J.; Strachan, T.; Trick, M., 1982: The dynamics of genome evolution and species differentiation. In: Genome evolution. G. Dover and R. B. Flavell (Eds.). Academic Press, London. pp. 343-372.
19. Felsenstein, J., 1993: PHYLIP (Phylogeny Inference Package), version 3.5c. Department of Genetics, University of Washington, Seattle, USA.
20. Fontana, F., 1994: Chromosomal nucleolar organizer regions in four sturgeon species as markers of karyotype evolution in Acipenseriformes (Pisces). Genome 37, 888-892.
21. Fontana, F.; Tagliavini, J,; Congiu, L.; Lanfredi, M.; Chicca, M.; Laurente, C.; Rossi, R., 1998: Karyotype characterization of the great sturgeon, Huso huso, by multiple staining techniques and flourescent in situ hybridization. Mar. Biol. 132, 495-501.
22. Gaut, B. S.; Le Thierry d'Ennequin, M.; Peek, A. S.; Sawkins, M. C., 2000: Maize as a model for the evolution of plant nuclear genomes. Proc. Natl. Acad. Sci. USA 97(13), 7008-7015.
23. Gutell, R. R., 1994: Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994. Nuc. Acid. Res. 22(17), 3502-3507.
24. Hillis, D. M.; Davis, S. K, 1988: Ribosomal DNA: Intraspecific polymorphism, concerted evolution, and phylogeny reconstruction. Syst. Zool. 37(1), 63-66.
25. Hillis, D. M.; Dixon, M. T., 1991: Ribosomal DNA: Molecular evolution and phylogenetic inference. Quart. Rev. Biol. 66(4), 411-453.
26. Jobst, J.; King, K.; Hemleben, V., 1998: Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and phylogenetic relationships among species of the family Cucurbitaceae. Mol. Phylogenet. Evol. 9(2), 204-219.
27. Kimura, M., 1980: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
28. Krieger, J., 2000: Molecular phylogenetics and evolution of the North American sturgeon and paddlefish (Order Acipenseriformes). Doc. diss., Ohio State Univ., Columbus, Ohio, USA.
29. Krieger, J., Fuerst, P. A.; Cavender, T. M., 2000: Phylogenetic relationships of the North American sturgeons (order Acipenseriformes) based on mitochondrial DNA sequences. Mol. Phylog. Evol. 16(1), 64-72.
30. Kumar, S.; Tamura, K.; Nei, M., 1993: MEGA: (Molecular Evolutionary Genetics Analysis), version 1.01. University of Molecular Evolutionary Genetics, Penn. State Univ., University Park, PA, USA.
31. Lanfredi, M.; L. Congiu, L.; Garrido-Ramos, M. A.; De la án, R.; Leis, M.; Chicca, M.; Rossi, R.; Tagliavini, J.; Ruiz Rejón, C.; Fontana, F., 2001: Chromosomal location and evolution of a satellite DNA family in seven sturgeon species. Chromosome Res. 9, 4-52.
32. Lauder, G. V.; Liem, K. F., 1983: The evolution and interrelationships of the Actinopterygian fishes. Bull. Mus. Comp. Zool. 150(3), 95-197.
33. Lê, H. L. V.; Lecointre, G.; Perasso, R., 1993: A 28S rRNA based phylogeny of the gnathostomes: First steps in the analysis of conflict and congruence with morphologically based cladograms. Mol. Phylog. Evol. 2(1), 31-51.
34. Maniatis, T.; Fritsch, E. F.; Sambrook, J., 1982: Molecular Cloning: A laboratory manual. Cold Spring Harbor Lab., Cold Spring Harbor, NY. 545 pp.
35. Patterson, C., 1982: Morphology and interrelationships of primitive Actinopterygian fishes. Am. Zool. 22, 241-259.
36. Reed, K. M.; Phillips, R. B., 2000: Structure and organization of the rDNA intergenic spacer in lake trout (Salvelinus namaycush). Chromosome Res. 8(1), 5-16.
37. Saiki, R. K.; Gelfand, D. H.; Stoffel, S.; Scharf, S. J.; Higuchi, R.; Horn, G. T.; Mullis, K. B.; Erlich, E.H., 1988: Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239, 487-491.
38. Saitou, N.; Nei, M., 1987: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4(4), 406-425.
39. Skamrov, A.; Goldman, M.; Klasova, J.; Beabealashvilli, R., 1995: Mycoplasma gallisepticum 16S ribosomal RNA genes. FEMS Microbiol. Letters 128, 321-325.
40. Stock, D. W.; Moberg, K. D.; Maxon, L. R.; Whitt, G. S., 1991: A phylogenetic analysis of the 18S ribosomal RNA sequence of thecoelacanth Latimeria chalumnae. Environ. Biol. Fish. 32, 99-117.
41. Stock, D. W.; Whitt, G. S., 1992: Evidence from 18S ribosomal RNA sequences that lampreys and hagfishes form a natural group. Science 257(5071), 787-789.
42. Stothard, J. R.; Frame, I. A.; Carrasco, H. J.; Miles, M. A., 2000: Analysis of genetic diversity of Trypanosoma cruzi: an application of riboprinting and gradient gel electrophoresis methods. Mem. Inst. Oswaldo Cruz 95(4), 545-551.
43. Suh, Y.; Thien, L. B.; Reeve, H. E.; Zimmer, E. A., 1993: Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. Am. J. Bot. 80, 1042-1055.
44. Swofford, D. L., 1990: PAUP-Phylogenetic Analysis Using Parsimony (Version 3.0), Computer program distributed by the Illinois Natural History Survey, Champaign, IL, USA.
45. Wada, H., 1998: Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny. Mol. Biol. Evol. 15(9), 1189-1194.
46. Wendel, J. F., 2000: Genome evolution in polyploids. Plant Mol. Biol. 42(1), 225-249.
47. Yao, M.-C.; Gall, J. G., 1977: A single integrated gene for ribosomal RNA in a eucaryote, Tetrahymena pyriformis. Cell 12, 121-132.
48. Zhuo, L.; Reed, K. M.; Phillips, R. B., 1995: Hypervariability of ribosomal DNA at multiple chromosomal sites in lake trout (Salvelinus namaycush). Genome 38, 487-496.