NMR structure of the N-terminal domain of the replication initiator protein DnaA

Journal of Structural and Functional Genomics

Volumn 8, Issue 1, 2007, Pages 11-17

  Lowery, Thomas J ^a,b   Pelton, Jeffrey G ^a   Chandonia, John Marc ^a   Kim, Rosalind ^a   Yokota, Hisao ^a   Wemmer, David E ^a,b  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

ATPase; DiaA; DnaB; Initiation; Replication

Indexed keywords

REPLICATION INITIATOR PROTEIN DNAA;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; DNA REPLICATION; HYDROGEN BOND; HYDROPHOBICITY; MYCOPLASMA GENITALIUM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SURFACE PROPERTY; ULTRACENTRIFUGATION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CARRIER PROTEINS; DNA REPLICATION; DNA-BINDING PROTEINS; DNAB HELICASES; ESCHERICHIA COLI; HYDROGEN BONDING; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; MYCOPLASMA GENITALIUM; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); MYCOPLASMA GENITALIUM;

EID: 36448954249     PISSN: 1345711X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10969-007-9022-7     Document Type: Article

References (59)

1. Marszalek J, Kaguni JM (1994) J Biol Chem 269:2883-2890
2. Kato J (2005) Crit Rev Biochem Mol Biol 40:331-342
3. Messer W (2002) FEMS Microbiol Rev 26:355-374
4. Messer W, Blaesing F, Majika J, Nardmann J, Schaper S, Schmidt A, Seitz H, Speck C, Tuengler D, Wegrzyn G, Weigel C, Welzeck M, Zakrzewska-Czerwinska J (1999) Biochemie 81:819-825
5. Sutton MD, Kaguni JM (1997) J Mol Biol 274:546-561
6. Erzberger JP, Pirruccello MM, Berger JM (2002) EMBO J 21:4763-4773
7. Erzberger JP, Mott MI, Berger JM (2006) Nat Struct Biol 13:676-683
8. Fujikawa N, Kurumizaka H, Nureki O, Terada T, Shirouzu M, Katayama T, Yokoyama S (2003) Nucleic Acids Res 31:2077-2086
9. Schaper S, Messer W (1995) Proteins 28:1-9
10. Weigel C, Schmidt A, Seitz H, Tuengler D, Welzeck M, Messer W (1999) Mol Microbiol 34:53-66
11. Speck C, Messer W (2001) EMBO J 20:1469-1476
12. Speck C, Weigel C, Messer W (1999) EMBO J 18:6169-6176
13. Crooke E, Thresher R, Hwang DS, Griffin J, Kornberg A (1993) J Mol Biol 233:16-24
14. Funnell BE, Baker TA, Kornberg A (1987) J Biol Chem 262:10327-10334
15. Messer W, Blaesing F, Jakimowicz D, Krause M, Majka J, Nardmann J, Schaper S, Seitz H, Speck C, Weigel C, Wegrzyn G, Welzeck M, Zakrzewska-Czerwinska J (2001) Biochimie 83:5-12
16. Jakimowicz D, Majka J, Konopu G, Wegrzyn G, Messer W, Schrempf H, Zakrzewska-Czerwinska J (2000) J Mol Biol 298:351-364
17. Majka J, Zakrzewska-Czerwinska J, Messer W (2001) J Biol Chem 276:6243-6252
18. Felczak M, Simmons LA, Kaguni JM (2005) J Biol Chem 280:24627-24633
19. Simmons LA, Felczak M, Kaguni JM (2003) Mol Microbiol 49:849-858
20. Seitz H, Weigel C, Messer W (2000) Mol Microbiol 37:1270-1279
21. Ishida T, Akimitsu N, Kashioka T, Hatano M, Kubota T, Ogata Y, Sekimizu K, Katayama T (2004) J Biol Chem 279:45546-45555
22. Chandonia JM, Kim SH, Brenner SE (2006) Proteins 62:356-370
23. Shin DH, Kim JS, Yokota H, Kim R, Kim SH (2006) Protein Sci 15:921-928
24. Marley J, Lu M, Bracken C (2001) J Biomol NMR 20:71-75
25. Demeler G (2005). In: Scott DJ, Rowe AJ (eds) Modern analytical ultracentrifugation: techniques and methods, Royal Society of Chemistry, UK, pp 210-229
26. Grzeisek S, Bax A (1992) J Magn Reson 99:201-207
27. Kay LE, Xu GY, Yamazaki T (1994) J Magn Reson 109 A:129-133
28. Stonehouse J, Clowes RT, Shaw GL, Keeler J, Laue ED (1995) J Biomol NMR 5:226-232
29. Grzeisek S, Bax A (1992) J Am Chem Soc 114:6291-6293
30. Wittekind M, Mueller L (1993) J Magn Reson 101 B:201-205
31. Grzesiek S, Bax A (1993) J Biomol NMR 3:185-204
32. Grzesiek S, Anglister J, Bax A (1993) J Magn Reson 101 B:114-119
33. Driscoll PC, Clore GM, Marion D, Wingfield PT, Gronenborn AM (1990) Biochemistry 29:3542-3556
34. Kay LE, Xu GY, Singer A, Muhandram D, Forman-Kay J (1993) J Magn Reson 101 B:333-337
35. Kuboniwa H, Grzesiek S, Delaglio F, Bax A (1994) J Biomol NMR 4:871-878
36. Neri D, Szyperski T, Otting G, Senn H, Wuthrich K (1989) Biochemistry 28:7510-7516
37. Szyperski T, Neri D, Leiting B, Otting G, Wuthrich K (1992) J Biomol NMR 2:323-334
38. Vuister GW, Clore GM, Gronenborn AM, Powers R, Garrett DS, Tschudin R, Bax A (1993) J Magn Reson 101 B:210-213
39. Ottiger M, Delaglio F, Bax A (1998) J Magn Reson 131:373-378
40. Tjandra N, Bax A (1997) J Am Chem Soc 119:9576-9577
41. Hansen MR, Mueller L, Pardi A (1998) Nat Struct Biol 5:1065-1074
42. Clore GM, Gronenborn AM, Bax A (1998) J Magn Reson 133:216-221
43. Losonczi JA, Andrec M, Fischer MW, Prestegard JH (1999) J Magn Reson 138:334-342
44. Zweckstetter M, Bax A (2000) J Am Chem Soc 122:3791-3792
45. Bax A, Kontaxis G, Tjandra N (2001) Methods Enzymol 339:127-174
46. Bhattacharya A, Tejero R, Montelione GT (2007) Proteins 66:778-795
47. Laskowski RA, Rullmannn JA, MacArthur MW, Kaptein R, Thornton JM (1996) J Biomol NMR 8:477-486
48. Luthy R, Bowie JU, Eisenberg D (1992) Nature 356:83-85
49. Sippl MJ (1993) Proteins 17:355-362
50. Lovell SC, Davis IW, Arendall WB 3rd, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC (2003) Proteins 50:437-450
51. Rice LM, Brunger AT (1994) Proteins 19:277-290
52. Stein EG, Rice LM, Brunger AT (1997) J Magn Reson 124:154-164
53. Schwieters CD, Kuszewski JJ, Tjandra N, Clore GM (2003) J Magn Reson 160:65-73
54. Fletcher CM, Jones DNM, Diamond R, Neuhaus D (1996) J Biomol NMR 8:292-310
55. Holm L, Sander C (1993) J Mol Biol 233:123-138
56. Huang YJ, Swapna GV, Rajan PK, Ke H, Xia B, Shukla K, Inouye M, Montelione GT (2003) J Mol Biol 327:521-536
57. Rubin SM, Pelton JG, Yokota H, Kim R, Wemmer DE (2003) J Struct Funct Genomics 4:235-243
58. Abe Y, Jo T, Matsuda Y, Matsunaga C, Katayama T, Ueda T (2007) J Biol Chem 282:17816-17827
59. Holm L, Park J (2000) Bioinformatics 16:566-567