메뉴 건너뛰기




Volumn 13, Issue 3, 2007, Pages 305-335

Mining gene-sample-time microarray data: A coherent gene cluster discovery approach

Author keywords

Bioinformatics; Clustering; Microarray data

Indexed keywords

BIOINFORMATICS; MEDICAL APPLICATIONS;

EID: 36248984338     PISSN: 02191377     EISSN: 02193116     Source Type: Journal    
DOI: 10.1007/s10115-006-0031-9     Document Type: Article
Times cited : (12)

References (43)
  • 1
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling
    • Alizadeh AA, Eisen MB, Davis RE et al (2000) Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling. Nature 403:503-511
    • (2000) Nature , vol.403 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3
  • 2
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array
    • Alon U, Barkai N, Notterman DA et al (1999) Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array. Proc Natl Acad Sci USA 96(12):6745-6750
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.12 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3
  • 3
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter O, Brown PO, Bostein D (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci USA 97(18):10101-10106
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.18 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Bostein, D.3
  • 6
    • 0346168554 scopus 로고    scopus 로고
    • The gene ontology project: Structured vocabularies for molecular biology and their application to genome and expression analysis
    • In: New York
    • Blake JA, Harris M (2003) The gene ontology project: Structured vocabularies for molecular biology and their application to genome and expression analysis. In: Current protocols in bioinformatics Wiley, New York
    • (2003) Current Protocols in Bioinformatics Wiley
    • Blake, J.A.1    Harris, M.2
  • 7
    • 0034566393 scopus 로고    scopus 로고
    • Biclustering of expression data
    • Cheng Y, Church GM (2000) Biclustering of expression data. Proc ISMB'00 8:93-103
    • (2000) Proc ISMB'00 , vol.8 , pp. 93-103
    • Cheng, Y.1    Church, G.M.2
  • 8
    • 0032417696 scopus 로고    scopus 로고
    • Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays
    • Der SD, Zhou A, Williams BR, Silverman RH (1998) Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays. Proc Natl Acad Sci USA 95(26):15623-15628
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.26 , pp. 15623-15628
    • Der, S.D.1    Zhou, A.2    Williams, B.R.3    Silverman, R.H.4
  • 10
    • 0036489046 scopus 로고    scopus 로고
    • Comparison of discrimination methods for the classification of tumors using gene expression data
    • Dudoit S, Fridlyand J, Speed TP (2002) Comparison of discrimination methods for the classification of tumors using gene expression data. J Am Stat Assoc 77-87
    • (2002) J Am Stat Assoc , pp. 77-87
    • Dudoit, S.1    Fridlyand, J.2    Speed, T.P.3
  • 11
  • 12
    • 0032269108 scopus 로고    scopus 로고
    • How many clusters? Which clustering method? Answers via model-based cluster analysis
    • Fraley C, Raftery AE (1998) How many clusters? Which clustering method? Answers via model-based cluster analysis. Comput J 41(8):578-588
    • (1998) Comput J , vol.41 , Issue.8 , pp. 578-588
    • Fraley, C.1    Raftery, A.E.2
  • 13
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub TR, Slonim DK, Tamayo P et al (1999) Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 286(15):531-537
    • (1999) Science , vol.286 , Issue.15 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3
  • 15
    • 0034515528 scopus 로고    scopus 로고
    • A clustering algorithm based on graph connectivity
    • Hartuv E, Shamir R (2000) A clustering algorithm based on graph connectivity. Inf Process Lett 76(4-6):175-181
    • (2000) Inf Process Lett , vol.76 , Issue.4-6 , pp. 175-181
    • Hartuv, E.1    Shamir, R.2
  • 16
    • 0035108235 scopus 로고    scopus 로고
    • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    • Herrero J, Valencia A, Dopazo J (2001) A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17:126-136
    • (2001) Bioinformatics , vol.17 , pp. 126-136
    • Herrero, J.1    Valencia, A.2    Dopazo, J.3
  • 17
    • 0032729435 scopus 로고    scopus 로고
    • Exploring expression data: Identification and analysis of coexpressed genes
    • Heyer LJ, Kruglyak S, Yooseph S (1999) Exploring expression data: identification and analysis of coexpressed genes. Genome Res 9(11):1106-1115
    • (1999) Genome Res , vol.9 , Issue.11 , pp. 1106-1115
    • Heyer, L.J.1    Kruglyak, S.2    Yooseph, S.3
  • 22
    • 0035032570 scopus 로고    scopus 로고
    • Statistical design and the analysis of gene expression microarrays
    • Kerr K, Churchill G (2001) Statistical design and the analysis of gene expression microarrays. Genet Res 77:123-128
    • (2001) Genet Res , vol.77 , pp. 123-128
    • Kerr, K.1    Churchill, G.2
  • 24
    • 0347079826 scopus 로고    scopus 로고
    • Analysis of molecular profile data using generative and discriminative methods
    • Moler EJ, Chow ML, Mian IS (2000) Analysis of molecular profile data using generative and discriminative methods. Physiol Genomics 4(2):109-126
    • (2000) Physiol Genomics , vol.4 , Issue.2 , pp. 109-126
    • Moler, E.J.1    Chow, M.L.2    Mian, I.S.3
  • 29
    • 0036645183 scopus 로고    scopus 로고
    • Interactively exploring hierarchical clustering results
    • Seo J, Shneiderman B (2002) Interactively exploring hierarchical clustering results. IEEE Comput 35(7):80-86
    • (2002) IEEE Comput , vol.35 , Issue.7 , pp. 80-86
    • Seo, J.1    Shneiderman, B.2
  • 30
    • 0000387926 scopus 로고    scopus 로고
    • Click: A clustering algorithm for gene expression analysis
    • Shamir R, Sharan R (2000) Click: A clustering algorithm for gene expression analysis. In: Proceedings of ISMB '00
    • (2000) Proceedings of ISMB '00
    • Shamir, R.1    Sharan, R.2
  • 31
    • 0036080361 scopus 로고    scopus 로고
    • Adaptive quality-based clustering of gene expression profiles
    • Smet FD, Mathys J, Marchal K et al (2002) Adaptive quality-based clustering of gene expression profiles. Bioinformatics 18:735-746
    • (2002) Bioinformatics , vol.18 , pp. 735-746
    • Smet, F.D.1    Mathys, J.2    Marchal, K.3
  • 33
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • Tamayo P, Solni D, Mesirov J et al (1999) Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA 96(6):2907-2912
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.6 , pp. 2907-2912
    • Tamayo, P.1    Solni, D.2    Mesirov, J.3
  • 35
    • 0033028596 scopus 로고    scopus 로고
    • Systematic determination of genetic network architecture
    • Tavazoie S, Hughes D, Campbell MJ et al (1999) Systematic determination of genetic network architecture. Nature Genet 281-285
    • (1999) Nature Genet , pp. 281-285
    • Tavazoie, S.1    Hughes, D.2    Campbell, M.J.3
  • 37
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98(9):5116-5121
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.9 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 40
    • 0000959484 scopus 로고    scopus 로고
    • Cliff: Clustering of high-dimensional microarray data via iterative feature filtering using normalized cuts
    • Xing EP, Karp RM (2001) Cliff: Clustering of high-dimensional microarray data via iterative feature filtering using normalized cuts. Bioinformatics 17(1):306-315
    • (2001) Bioinformatics , vol.17 , Issue.1 , pp. 306-315
    • Xing, E.P.1    Karp, R.M.2
  • 42
    • 0034782618 scopus 로고    scopus 로고
    • Model-based clustering and data transformations for gene expression data
    • Yeung KY, Fraley C, Murua A, Raftery AE, Ruzzo WL (2001) Model-based clustering and data transformations for gene expression data. Bioinformatics 17:977-987
    • (2001) Bioinformatics , vol.17 , pp. 977-987
    • Yeung, K.Y.1    Fraley, C.2    Murua, A.3    Raftery, A.E.4    Ruzzo, W.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.