Antibiotic-induced DNA methylation changes in calluses of Arabidopsis thaliana

Plant Cell, Tissue and Organ Culture

Volumn 72, Issue 2, 2003, Pages 157-162

  Bardini, Mauro ^a   Labra, Massimo ^b   Winfield, Mark ^a   Sala, Francesco ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b UNIVERSITY OF MILANO BICOCCA   (Italy)

Author keywords

AFLP; Kanamycin; Methylation; MSAP; Somaclonal variation

Indexed keywords

ANTIBIOTICS; GENES; GENETIC ENGINEERING; PLANTS (BOTANY); SEED;

EPIGENETIC EVENTS; TRANSFORMATION PROTOCOLS;

DNA;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0242669968     PISSN: 01676857     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1022208302819     Document Type: Article

References (34)

1. Bergelson J, Stahl E, Dudek & Kreitman M (1998) Genetic variation within and among populations of Arabidopsis thaliana. Genetics 148: 1311-1323
2. Boitel-Conti M, Laberche JC, Lanoue A, Ducrocq & Sangwan-Norreel BS (2000) Influence of feeding precursors on tropane alkaloid production during an abiotic stress in Datura innoxia transformed roots. Plant Cell Tiss. Org. Cult. 60: 131-137
3. Brar DS & Jain SM (1998) Somaclonal variation: mechanism and application in crop improvement. In: Jain SM, Brara DS & Ahloowalia BS (eds) Somaclonal Variation and Induced Mutation in Crop Improvement (pp. 15-37). Kluwer Academic Publishers, Dordrecht
4. Bregitzer P, Campbell RD & Wu Y (1995) Plant regeneration from barley callus: effects of 2,4-dichlorophenoxyacetic acid and phenylacetic acid. Plant Cell Tiss. Org. Cult. 43: 229-235
5. Burn JE, Bagnall DJ, Metzger JD, Dennis ES & Peacock WJ (1993) DNA methylation, vernalization, and the initiation of flowering. Proc. Natl. Acad. Sci. USA 90: 287-291
6. Chen RZ, Pettersson U, Beard C, Jackson-Grusby L & Jaenisch R (1998) DNA hypomethylation leads to elevated mutation rates. Nature 395: 89-93
7. Clough SJ & Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thatiana. Plant J. 16: 735-743
8. Do GS, Seo BB, Ko JM, Lee SH, Pak JH, Kim IS & Song SD (1999) Analysis of somaclonal variation through tissue culture and chromosomal localization of rDNA sites by fluorescent in situ hybridization in wild Allium tuberosum and a regenerated variant. Plant Cell Tiss. Org. Cult. 57: 113-119
9. Erschadi S, Haberer G, Schöniger M & Torres-Ruiz RA (2000) Estimating genetic diversity of Arabidopsis thaliana ecotypes with amplified fragment length polymorphisms (AFLP). Theor. Appl. Genet. 100: 633-640
10. Finnegan EJ, Genger RK, Kovac K, Peacock WJ & Dennis ES (1998) DNA methylation and the promotion of flowering by vernalization. Proc. Natl. Acad. Sci. USA 95: 5824-5829
11. Hagege D (1995) Habituation in plant cell cultures: adaptation to free radical attacks. CR Soc. Biol. 189: 1183-1190
12. Jaligot E, Rival A, Beule T, Dussert S & Vereil JL (2000) Somaclonal variation in oil palm (Elaeis guineesis Jacq.): the DNA methylation hypothesis. Plant Cell Rep. 19: 684-690
13. Kaeppler SM & Phillips RL (1993) Tissue culture-induced DNA methylation variation in maize. Proc. Natl. Acad. Sci. USA 90: 8773-8776
14. Kaeppler SM, Kaeppler HF & Yong Rhee (2000a) Epigenetic aspects of somaclonal variation in plants. Plant Mol. Biol. 43: 179-188
15. Kaeppler HF, Menon GK, Skadsen RW, Nuutila AM & Carlson AR (2000b) Transgenic oat plants via visual selection of cells expressing green fluorescent protein. Plant Cell Rep. 19: 661-666
16. Kovarik A, Koukalova B, Bezde M & Opatrn Z (1997) Hypermethylation of tobacco heterochromatic loci in response to osmotic stress. Theor. Appl. Genet. 95: 301-306
17. Labra M, Savini C, Bracale M, Pelucchi N, Colombo L, Bardini M & Sala F (2001) Genomic changes in transgenic rice (Oryza sativa L.) plants produced by infecting calluses with Agrobacterium tumefaciens. Plant Cell Rep. 20: 325-330
18. Laine E, Lamblin F, Lacoux J, Dupre P, Roger D, Sihachakr D & David A (2000) Gelling agent influences the detrimental effect of kanamycin on adventitious budding in flax. Plant Cell Tiss. Org. Cult. 63: 77-80
19. Laird PW & Jaenisch R (1997) DNA methylation and cancer. Hum. Mol. Genet. 3: 1487-1495
20. Larkin PJ & Scowcroft WF (1981) Somaclonal Variation - a novel source of variability from cell cultures for plant improvement. Theor. Appl. Genet. 60: 197-214
21. Lee ML & Phillips RL (1988) The chromosomal basis of somaclonal variation. Annu. Rev. Plant Physiol Plant Mol. Biol. 39: 413-437
22. LoSchiavo F, Pitto L, Giuliano G, Torti G, Nuti-Ronchi V, Marazziti D, Vergara R, Orselli S & Terzi M (1989) DNA methylation of embryogenic carrot cell cultures and its variations as caused by mutation, differentiation, hormones and hypomethylating drugs. Theor. Appl. Genet. 77: 3-5
23. Meyer P, Linn F, Heidmann I, Meyerz AH, Niedenhof I & Saedler H (1992) Endogenus and enviromental factor influence 35S promoter methylation of a maize A1 gene construct in transgenic petunia and its colour phenotype. Mol. Gen. Genet. 231: 345-352
24. Montserrat E, Marfà V, Melé E & Messeguer J (2001) Study of different antibiotic combinations for use in the elimination of Agrobacterium with kanamycin selection in carnation. Plant Cell Tiss. Org. Cult. 65: 211-220
25. Plader W (1998) The relationship between the regeneration system and genetic variability in the cucumber (Cucumis sativus L.). Euphytica 103: 9-15
26. Pluhar SA, Erickson L & Pauls KP (2001) Effects of tissue culture on a highly repetitive DNA sequence (E180 satellite) in Medicago sativa. Plant Cell Tiss. Org. Cult. 67: 195-199
27. Podestà A, Ruffini-Castiglione M, Avanzi S & Montagnoli G (1993) Molecular geometry of antigen binding by a monoclonal antibody against 5-methylcytosine. Int. J. Biochem. 25: 926-933
28. Prakash AP & Kumar PP (1997) Inhibition of shoot induction by 5-azacytidine and 5-aza-2′-deoxycytidine in Petunia involves DNA hypomethylation. Plant Cell Rep. 16: 719-724
29. Richards EJ (1997) DNA methylation and plant development. Trends Genet. 13: 319-323
30. Saieed NT, Douglas GC & Fry DJ (1994) Somaclonal variation in growth, leaf phenotype and gas exchange characteristics of poplar: utilization of leaf morphotype analysis as a basis for selection. Tree Physiol. 14: 1-16
31. Salvi ND, Singh H, Tivarekar S & Eapen S (2001) Plant regeneration from different explants of neem. Plant Cell Tiss. Org. Cult. 65: 159-162
32. Schmitt F, Oakeley EJ & Jost JP (1997) Antibiotics induce genome-wide hypermethylation in cultured Nicotiana tabacum plants J. Biol. Chem. 272: 1534-1540
33. Ushijima T, Morimura K, Hosoya Y, Okonogi H, Tatematsu M, Sugimura T & Nagao M (1997) Establishment of methylation-sensitive-representational difference analysis and isolation of hypo- and hypermethylated genomic fragments in mouse liver tumors. Proc. Natl. Acad. Sci. USA 94: 2284-2228
34. Xiong LZ, Xu CG, Saghai Maroof MA & Zhang Q (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol. Gen. Genet. 261: 439-446