Phylogenetic relationships of Chaetomium and similar genera based on ribosomal DNA sequences

Mycologia

Volumn 91, Issue 3, 1999, Pages 434-442

  Lee, Seonju ^a,b   Hanlin, Richard T ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b Animal Plant and Fisheries Quarantine and Inspection Agency   (South Korea)

Author keywords

Achaetomium; Ascomycota; Ascotricha; Chaetomiaceae; Coniochaeta; Emericella nidulans; Eurotium rubrum; Kernia; Lophotrichus; Microascales; Petriella; Pyrenomycetes; Sord ariales; Sordaria; Thielavia; Xylariales

Indexed keywords

FUNGAL GENETICS; GENETIC DIVERSITY; ISOLATION PROCEDURE; PHYLOGENY; RIBOSOMAL DNA; SEQUENCE ALIGNMENT; TAXONOMY;

ACHAETOMIUM; ASCOTRICHA; CHAETOMIUM; CONIOCHAETA;

EID: 0032987062     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.2307/3761344     Document Type: Article

References (66)

1. Ainsworth GC. 1961. Ainsworth and Bisby's dictionary of the fungi. 5th ed. Kew, Surrey, England: CMI. 541 p.
2. _. 1971. Ainsworth and Bisby's dictionary of the fungi. 6th ed. Kew, Surrey, England: CMI. 663 p.
3. _, Bisby GR. 1950. A dictionary of the fungi. 3rd ed. Kew, Surrey, England: IMI. 447 p.
4. _, _. 1954. A dictionary of the fungi. 4th ed. Kew, Surrey, England: IMI. 475 p.
5. Alexopoulos CJ. 1952. Introductory mycology. 1st ed. New York: Wiley. 482 p.
6. _. 1962. Introductory mycology. 2nd ed. New York: Wiley. 613 p.
7. _, Mims CW. 1979. Introductory mycology. 3rd ed. New York: Wiley. 632 p.
8. _, _, Blackwell M. 1996. Introductory mycology. 4th ed. New York: Wiley. 868 p.
9. Ames LM. 1963. A monograph of the Chaetomiaceae. The United States Army research and development series. 125 p.
10. Arx JA von, Dreyfuss M, Müller M. 1984. A revaluation of Chaetomium and the Chaetomiaceae. Persoonia 12: 169-179.
11. _, Guarro J, Figueras MJ. 1986. The ascomycete genus Chaetomium. Beih Nova Hedwigia 84:1-162.
12. Benjamin RK. 1949. Two species representing a new genus of the Chaetomiaceae. Mycologia 41:346-354.
13. Berbee ML, Taylor JW. 1992a. Detecting morphological convergence in true fungi, using 18S rRNA gene sequence data. BioSystems 28:117-125.
14. _, _. 1992b. Convergence in ascospore discharge mechanism among Pyrenomycete fungi based on 18S ribosomal RNA gene sequence. Mol Phylogenet Evol 1:59-71.
15. _, _. 1992c. 18S ribosomal RNA gene sequence characters place the human pathogen Sporothrix schenckii in the genus Ophiostoma. Exp Mycol 16:87-91.
16. _, _. 1993. Dating the evolutionary radiations of the true fungi. Can J Bot 71:1114-1127.
17. Berkeley MJ. 1838. Notices of British Fungi. Ann Mag Nat Hist Ser 1. 1:257-264. (original not seen)
18. Bruns TD, White TJ, Taylor JW. 1991. Fungal molecular systematics. Annu Rev Ecol Syst 22:525-564.
19. Bryan GT, Daniels MJ, Osbourn AE. 1995. Comparison of fungi within Gaeumannomyces-Phialophora complex by analysis of ribosomal DNA sequences. Appl Environ Microbiol 61:681-689.
20. Cannon PF. 1986. A revision of Achaetomium, Achaetomiella and Subramaniula, and some similar species of Chaetomium. Trans Br Mycol Soc 87:45-76.
21. Chivers AH. 1915. A monograph of the genera Chaetomium and Ascotricha. Mem Torrey Bot Club 14:155-240.
22. Corlett M. 1963. The developmental morphology of two species of Microascus. Can J Bot 41:253-266.
23. _. 1966. Developmental studies in the Microascaceae. Can J Bot 44:79-88.
24. Donoghue MJ, Olmstead RG, Smith JF, Palmer JD. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann Missouri Bot Gard 79:337-345.
25. Dreyfuss M. 1976. Taxonomische Untersuchungen innerhalb der Gattung Chaetomium. Sydowia 28:50-133.
26. Eriksson O. 1982. Outline of the Ascomycetes. Mycotaxon 15:203-248.
27. Farris JS. 1989. he retention index and the rescaled consistency index. Cladistics 5:417-419.
28. Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
29. Feng DM, Doolittle RF. 1987. Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25:351-360.
30. Graham GC, Mayers P, Henry RJ. 1994. A simplified method for the preparation of fungal genomic DNA for PCR and RAPD analysis. Biotechniques 16:49-50.
31. Hausner G, Reid J, Klassen GR. 1993. On the subdivision of Ceratocystis s.l., based on partial ribosomal DNA sequences. Can J Bot 71:52-63.
32. Hawksworth DL. 1971. A revision of the genus Ascotricha. Mycol Pap 126:1-28.
33. _, Sutton BC, Ainsworth GC. 1983. Ainsworth & Bisby's dictionary of the fungi. 7th ed. Kew, Surrey, England: CMI. 445 p.
34. Hibbett DS. 1992. Ribosomal RNA and fungal systematics. Trans Mycol Soc Japan 33:533-556.
35. Hillis DM. 1987. Molecular versus morphological approaches to systematics. Annu Rev Ecol Syst 18:23-42.
36. Ju YM, Rogers JD. 1996. A revision of the Genus Hypoxylon. Mycologia Memoir No. 20. Minnesota: APS press. 365 p.
37. Kahn RS, Cain RF. 1977. The occurrence of amyloid plugs in the asci of Ascotricha erinacea. Mycotaxon 5:409-414.
38. Kluge AG, Farris JS. 1969. Quantitative phyletics and the evolution of anurans. Syst Zool 18:1-32.
39. Laessøe T. 1994. Index ascomycetum 1. Xylariaceae. Syst Ascomycetum 13:43-112.
40. Lee SB, Taylor JW. 1990. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: A guide to methods and application. New York: Academic Press, p 282-287.
41. Malloch D. 1970. New concepts in the Microascaceae illustrated by two new species. Mycologia 62:727-740.
42. _, Cain RF. 1971a. The genus Kernia. Can J Bot 49: 855-867.
43. _, _. 1971b. New cleistothecial Sordariaceae and a new family, Coniochaetaceae. Can J Bot 49:869-880.
44. Martin GW. 1950. Key to the families of fungi. In: Ainsworth GC, Bisby GR, eds. Ainsworth and Bisby's Dictionary of the fungi. Kew, Surrey, England: CMI. p 497-519.
45. Melchers WJ, Verweij PE, van den Hurk P, van Belkum A. 1994. General primer-mediated PCR for detection of Aspergillus species. J Clin Microbiol 32:1710-1717.
46. Mukerji KG. 1968. The position of the genus Achaetomium in Pyrenomycetes. Proc Indian Acad Sci, P1 Sci 34: 288-292.
47. _, Saxena AS. 1975. Notes on Achaetomium, Anixiella, Boothiella, Chaetomidium, Lophotrichus, Pseudeurotium, Pycnidiophore, and the classification of the Chaetomiales. Beih Nova Hedwigia 47:373-404.
48. Rai JN, Tewari JP, Mukerji KG. 1964. Achaetomium, a new genus of ascomycetes. Can J Bot 42:693-697.
49. _, Wadhwani K, Tewari JP. 1970. Achaetomium macrosporum spec. nov. with notes on the genus Achaetomium. Indian Phytopathol 23:54-57.
50. Saenz GS, Taylor JW, Gargas A. 1994. 18S rRNA gene sequences and supraordinal classification of the Erysiphales. Mycologia 86:212-216.
51. Seth HK. 1970. A monograph of the genus Chaetomium. Beih Nova Hedwigia 37:1-133.
52. _. 1971. The genus Lophotrichus Benjamin. Nova Hedwigia 19:591-599.
53. Sherriff C, Whelan MJ, Arnold GM, Bailey JA. 1995. rDNA sequence analysis confirms the distinction between Colletotrichum graminicola and C. sublineolum. Mycol Res 99:475-478.
54. Skolko AJ, Groves JW. 1953. Notes on seed borne fungi VII. Chaetomium. Can J Bot 31:779-809.
55. Sogin ML, Miotto K, Miller L. 1986. Primary structure of the Neurospora crassa small unit ribosomal RNA. Nucl Acids Res 14:9540.
56. Sörgel G. 1960. Zum Problem der Trennung von Arten bei Pilzen, dargestellt am Beispiel der Ascomycetengattung Chaetomium. Arch Microbiol 36:51-66.
57. Spatafora JW, Blackwell M. 1993. Molecular systematics of unitunicate perithecial ascomycetes: The Clavicipitales-Hypocreales connection. Mycologia 85:912-922.
58. _, _. 1994. The polyphyletic origins of ophiostomatoid fungi. Mycol Res 98:1-9.
59. Swann EC, Taylor JW. 1993. Higher taxa of Basidiomycetes: An 18S rRNA gene perspective. Mycologia 85: 923-936.
60. Swofford DL. 1993. PAUP: Phylogenetic Analysis Using Parsimony, version 3.1. Computer package. Champaign, Illinois: Illinois Natural History Survey.
61. White TJ, Bruns TD, Lee SB, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: A guide to methods and application. New York: Academic Press. p 315-382.
62. Whiteside WC. 1961. Morphological studies in the Chaetomiaceae. I. Chaetomium. Mycologia 53:512-523.
63. _. 1962a. Morphological studies in the Chaetomiaceae. II. Ascotricha and Chaetomidium. Mycologia 54: 152-159.
64. _. 1962b. Morphological studies in the Chaetomiaceae. III. Lophotrichus. Mycologia 54:611-620.
65. Wilmotte A, van de Peer Y, Goris A, Chapelle S, de Baere R, Nelissen B, Neefs JM, Hennebert GL, de Wachter R. 1993. Evolutionary relationships among higher fungi inferred from small ribosomal subunit RNA sequence analysis. Syst Appl Microbiol 16:436-444.
66. Wingfield BD, Grant WS, Wolfaardt JF, Wingfield MJ. 1994. Ribosomal RNA sequence phylogeny is not congruent with ascospore morphology among species in Ceratocystis sensu stricto. Mol Biol Evol 11:376-383.