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Volumn 31, Issue 4, 2003, Pages 1311-1318

Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules

Author keywords

[No Author keywords available]

Indexed keywords

DNA BASE; HEMOLYSIN; NUCLEIC ACID BASE;

EID: 0037440660     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg218     Document Type: Review
Times cited : (132)

References (41)
  • 1
    • 0345552211 scopus 로고    scopus 로고
    • Single-molecule manipulation of double-stranded DNA using optical tweezers: Interaction studies of DNA with RecA and YOYO-1
    • Bennink,M.L., Scharer,O.D., Kanaar,R., Sakata-Sogawa,K., Schins,J.M., Kanger,J.S., de Grooth,B.G. and Greve,J. (1999) Single-molecule manipulation of double-stranded DNA using optical tweezers: interaction studies of DNA with RecA and YOYO-1. Cytometry, 36, 200-208.
    • (1999) Cytometry , vol.36 , pp. 200-208
    • Bennink, M.L.1    Scharer, O.D.2    Kanaar, R.3    Sakata-Sogawa, K.4    Schins, J.M.5    Kanger, J.S.6    de Grooth, B.G.7    Greve, J.8
  • 3
    • 0028766419 scopus 로고
    • Relaxation of a single DNA molecule observed by optical microscopy
    • Perkins,T.T., Quake,S.R., Smith,D.E. and Chu,S. (1994) Relaxation of a single DNA molecule observed by optical microscopy. Science, 264, 822-826.
    • (1994) Science , vol.264 , pp. 822-826
    • Perkins, T.T.1    Quake, S.R.2    Smith, D.E.3    Chu, S.4
  • 4
    • 0028766432 scopus 로고
    • Direct observation of tube-like motion of a single polymer chain
    • Perkins,T.T., Smith,D.E. and Chu,S. (1994) Direct observation of tube-like motion of a single polymer chain. Science, 264, 819-822.
    • (1994) Science , vol.264 , pp. 819-822
    • Perkins, T.T.1    Smith, D.E.2    Chu, S.3
  • 5
    • 0029638377 scopus 로고
    • Stretching of a single tethered polymer in a uniform flow
    • Perkins,T.T., Smith,D.E., Larson,R.G. and Chu,S. (1995) Stretching of a single tethered polymer in a uniform flow. Science, 268, 83-87.
    • (1995) Science , vol.268 , pp. 83-87
    • Perkins, T.T.1    Smith, D.E.2    Larson, R.G.3    Chu, S.4
  • 7
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith,S.B., Cui,Y. and Bustamante,C. (1996) Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science, 271, 795-799.
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.B.1    Cui, Y.2    Bustamante, C.3
  • 8
    • 0033548494 scopus 로고    scopus 로고
    • Single-polymer dynamics in steady shear flow
    • Smith,D.E., Babcock,H.P. and Chu,S. (1999) Single-polymer dynamics in steady shear flow. Science, 283, 1724-1727.
    • (1999) Science , vol.283 , pp. 1724-1727
    • Smith, D.E.1    Babcock, H.P.2    Chu, S.3
  • 10
    • 0036674122 scopus 로고    scopus 로고
    • Single molecule measurements of DNA transport through a nanopore
    • Meller,A. and Branton,D. (2002) Single molecule measurements of DNA transport through a nanopore. Electrophoresis, 23, 2583-2591.
    • (2002) Electrophoresis , vol.23 , pp. 2583-2591
    • Meller, A.1    Branton, D.2
  • 12
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven DNA translocations through a nanopore
    • Meller,A., Nivon,L. and Branton,D. (2001) Voltage-driven DNA translocations through a nanopore. Phys. Rev. Lett., 86, 3435-3438.
    • (2001) Phys. Rev. Lett. , vol.86 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 13
    • 0036672773 scopus 로고    scopus 로고
    • Evaluation of naropores as candidates for electronic analyte detection
    • Nakane,J., Akeson,M. and Marziali,A. (2002) Evaluation of naropores as candidates for electronic analyte detection. Electrophoresis, 23, 2592-2601.
    • (2002) Electrophoresis , vol.23 , pp. 2592-2601
    • Nakane, J.1    Akeson, M.2    Marziali, A.3
  • 14
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • Vercoutere,W., Winters-Hilt,S., Olsen,H., Deamer,D., Haussler,D. and Akeson,M. (2001) Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nat. Biotechnol., 19, 248-252.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.4    Haussler, D.5    Akeson, M.6
  • 15
    • 0035403495 scopus 로고    scopus 로고
    • Nanopores with a spark for single-molecule detection
    • Wang,H. and Branton,D. (2001) Nanopores with a spark for single-molecule detection. Nat. Biotechnol., 19, 622-623.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 622-623
    • Wang, H.1    Branton, D.2
  • 16
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz,J.J., Brandin,E., Branton,D. and Deamer,D.W. (1996) Characterization of individual polynucleotide molecules using a membrane channel. Proc. Natl Acad. Sci. USA, 93, 13770-13773.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 17
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • Akeson,M., Branton,D., Kasianowicz,J.J., Brandin,E. and Deamer,D.W. (1999) Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys. J., 77, 3227-3233.
    • (1999) Biophys. J. , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 19
    • 0034930381 scopus 로고    scopus 로고
    • Sequence-specific detection of individual DNA strands using engineered nanopores
    • Howorka,S., Cheley,S. and Bayley,H. (2001) Sequence-specific detection of individual DNA strands using engineered nanopores. Nat. Biotechnol., 19, 636-639.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 636-639
    • Howorka, S.1    Cheley, S.2    Bayley, H.3
  • 20
    • 0012169277 scopus 로고    scopus 로고
    • Use of a nanoscale pore to read short segments within single polynucleotide molecules
    • Kasianowicz,J.J., Kellermeyer.,M.S.Z. and Deamer,D.W. (eds) Kluwer Academic, Bikal, Hungary
    • Akeson,M., Deamer,D.W., Vercoutere,W., Braslau,R. and Olsen,H. (2002) Use of a nanoscale pore to read short segments within single polynucleotide molecules. In Kasianowicz,J.J., Kellermeyer.,M.S.Z. and Deamer,D.W. (eds), NATO Advanced Research Workshop on Polymer Structure and Transport in Confined Spaces. Kluwer Academic, Bikal, Hungary, Vol. 87, p. 390.
    • (2002) NATO Advanced Research Workshop on Polymer Structure and Transport in Confined Spaces , vol.87 , pp. 390
    • Akeson, M.1    Deamer, D.W.2    Vercoutere, W.3    Braslau, R.4    Olsen, H.5
  • 21
    • 0036797062 scopus 로고    scopus 로고
    • Characterization of nucleic acids by nanopore analysis
    • Deamer,D.W. and Branton,D. (2002) Characterization of nucleic acids by nanopore analysis. Acc. Chem. Res., 35, 817-825.
    • (2002) Acc. Chem. Res. , vol.35 , pp. 817-825
    • Deamer, D.W.1    Branton, D.2
  • 22
    • 0002182178 scopus 로고    scopus 로고
    • Gene Express
    • Voss,D. (1999) Gene Express. New Scientist, 164, 40-43.
    • (1999) New Scientist , vol.164 , pp. 40-43
    • Voss, D.1
  • 24
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia,J. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia, J.1
  • 25
    • 0001908198 scopus 로고
    • Fitting and statistical analysis of single-channel recordings
    • Sakmann,B. and Neher,E. (eds) Plenum Press, New York, NY
    • Colquhoun,D. and Sigworth,F.J. (1983) Fitting and statistical analysis of single-channel recordings. In Sakmann,B. and Neher,E. (eds), Single-Channel Recording. Plenum Press, New York, NY, pp. 191-263.
    • (1983) Single-Channel Recording , pp. 191-263
    • Colquhoun, D.1    Sigworth, F.J.2
  • 26
    • 0001908199 scopus 로고
    • The principles of stochastic interpretation of ion-channel mechanisms
    • Sakmann,B. and Neher,E. (eds) Plenum Press, New York, NY
    • Colquhoun,D. and Hawkes,A.G. (1983) The principles of stochastic interpretation of ion-channel mechanisms. In Sakmann,B. and Neher,E. (eds), Single-Channel Recording. Plenum Press, New York, NY, pp. 135-175.
    • (1983) Single-Channel Recording , pp. 135-175
    • Colquhoun, D.1    Hawkes, A.G.2
  • 27
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
    • Song,L., Hobaugh,M.R., Shustak,C., Cheley,S., Bayley,H. and Gouaux,J.E. (1996) Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore. Science, 274, 1859-1866.
    • (1996) Science , vol.274 , pp. 1859-1866
    • Song, L.1    Hobaugh, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6
  • 28
    • 0012173806 scopus 로고    scopus 로고
    • (3.01 edn). Pyramid Learning LLC, Hudson, OH
    • Michael,D. (1999) Chem-Site (3.01 edn). Pyramid Learning LLC, Hudson, OH.
    • (1999) Chem-Site
    • Michael, D.1
  • 29
    • 0025808064 scopus 로고
    • Stacking energies in DNA
    • Delcourt,S.G. and Blake,R.D. (1991) Stacking energies in DNA. J. Biol. Chem., 266, 15160-15169.
    • (1991) J. Biol. Chem. , vol.266 , pp. 15160-15169
    • Delcourt, S.G.1    Blake, R.D.2
  • 30
    • 0026899849 scopus 로고
    • Studies of DNA dumbbells. 1. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops - Evaluation of the nearest-neighbor stacking interactions in DNA
    • Doktycz,M.J., Goldstein,R.F., Paner,T.M., Gallo,F.J. and Benight,A.S. (1992) Studies of DNA dumbbells. 1. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops - evaluation of the nearest-neighbor stacking interactions in DNA. Biopolymers, 32, 849-864.
    • (1992) Biopolymers , vol.32 , pp. 849-864
    • Doktycz, M.J.1    Goldstein, R.F.2    Paner, T.M.3    Gallo, F.J.4    Benight, A.S.5
  • 32
    • 84985667623 scopus 로고
    • Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles
    • Gotoh,O. and Tgashira,Y. (1981) Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles. Biopolymers, 20, 1033-1042.
    • (1981) Biopolymers , vol.20 , pp. 1033-1042
    • Gotoh, O.1    Tgashira, Y.2
  • 33
    • 0029968822 scopus 로고    scopus 로고
    • Improved nearest-neighbor parameters for predicting DNA duplex stability
    • Santalucia,J., Allawi,H.T. and Seneviratne,A. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry, 35, 3555-3562.
    • (1996) Biochemistry , vol.35 , pp. 3555-3562
    • Santalucia, J.1    Allawi, H.T.2    Seneviratne, A.3
  • 35
    • 0029859713 scopus 로고    scopus 로고
    • Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
    • Sugimoto,N., Nakano,S., Yoneyama,M. and Honda,K. (1996) Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res., 24, 4501-4505.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4501-4505
    • Sugimoto, N.1    Nakano, S.2    Yoneyama, M.3    Honda, K.4
  • 36
    • 0034979126 scopus 로고    scopus 로고
    • Hydrogen bonding, base stacking, and steric effects in DNA replication
    • Kool,E.T. (2001) Hydrogen bonding, base stacking, and steric effects in DNA replication. Annu. Rev. Biophys. Biomol. Struct., 30, 1-22.
    • (2001) Annu. Rev. Biophys. Biomol. Struct. , vol.30 , pp. 1-22
    • Kool, E.T.1
  • 37
    • 0032491819 scopus 로고    scopus 로고
    • Highly precise shape mimicry by a difluorotoluene deoxynucleoside, a replication-competent substitute for thymidine
    • Guckian,K.M. and Kool,E.T. (1998) Highly precise shape mimicry by a difluorotoluene deoxynucleoside, a replication-competent substitute for thymidine. Angew. Chem. Int. Ed. Engl., 36, 2825-2828.
    • (1998) Angew. Chem. Int. Ed. Engl. , vol.36 , pp. 2825-2828
    • Guckian, K.M.1    Kool, E.T.2
  • 38
    • 0034646194 scopus 로고    scopus 로고
    • Importance of terminal base pair hydrogen-bonding in 3′-end proofreading by the Klenow fragment of DNA polymerase I
    • Morales,J.C. and Kool,E.T. (2000) Importance of terminal base pair hydrogen-bonding in 3′-end proofreading by the Klenow fragment of DNA polymerase I. Biochemistry, 39, 2626-2632.
    • (2000) Biochemistry , vol.39 , pp. 2626-2632
    • Morales, J.C.1    Kool, E.T.2
  • 39
    • 0030967829 scopus 로고    scopus 로고
    • A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity
    • Moran,S., Ren,R.X.F. and Kool,E.T. (1997) A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity. Proc. Natl Acad. Sci. USA, 94, 10506-10511.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10506-10511
    • Moran, S.1    Ren, R.X.F.2    Kool, E.T.3
  • 40
    • 0034194135 scopus 로고    scopus 로고
    • Thermodynamic parameters for DNA sequences with dangling ends
    • Bommarito,S., Peyret,N. and SantaLucia,J. (2000) Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res., 28, 1929-1934.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1929-1934
    • Bommarito, S.1    Peyret, N.2    SantaLucia, J.3


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