-
1
-
-
0345552211
-
Single-molecule manipulation of double-stranded DNA using optical tweezers: Interaction studies of DNA with RecA and YOYO-1
-
Bennink,M.L., Scharer,O.D., Kanaar,R., Sakata-Sogawa,K., Schins,J.M., Kanger,J.S., de Grooth,B.G. and Greve,J. (1999) Single-molecule manipulation of double-stranded DNA using optical tweezers: interaction studies of DNA with RecA and YOYO-1. Cytometry, 36, 200-208.
-
(1999)
Cytometry
, vol.36
, pp. 200-208
-
-
Bennink, M.L.1
Scharer, O.D.2
Kanaar, R.3
Sakata-Sogawa, K.4
Schins, J.M.5
Kanger, J.S.6
de Grooth, B.G.7
Greve, J.8
-
2
-
-
0027247578
-
Rapid sizing of individual fluorescently stained DNA fragments by flow cytometry
-
Goodwin,P.M., Johnson,M.E., Martin,J.C., Ambrose,W.P., Marrone,B.L., Jett,J.H. and Keller,R.A. (1993) Rapid sizing of individual fluorescently stained DNA fragments by flow cytometry. Nucleic Acids Res., 21, 803-806.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 803-806
-
-
Goodwin, P.M.1
Johnson, M.E.2
Martin, J.C.3
Ambrose, W.P.4
Marrone, B.L.5
Jett, J.H.6
Keller, R.A.7
-
3
-
-
0028766419
-
Relaxation of a single DNA molecule observed by optical microscopy
-
Perkins,T.T., Quake,S.R., Smith,D.E. and Chu,S. (1994) Relaxation of a single DNA molecule observed by optical microscopy. Science, 264, 822-826.
-
(1994)
Science
, vol.264
, pp. 822-826
-
-
Perkins, T.T.1
Quake, S.R.2
Smith, D.E.3
Chu, S.4
-
4
-
-
0028766432
-
Direct observation of tube-like motion of a single polymer chain
-
Perkins,T.T., Smith,D.E. and Chu,S. (1994) Direct observation of tube-like motion of a single polymer chain. Science, 264, 819-822.
-
(1994)
Science
, vol.264
, pp. 819-822
-
-
Perkins, T.T.1
Smith, D.E.2
Chu, S.3
-
5
-
-
0029638377
-
Stretching of a single tethered polymer in a uniform flow
-
Perkins,T.T., Smith,D.E., Larson,R.G. and Chu,S. (1995) Stretching of a single tethered polymer in a uniform flow. Science, 268, 83-87.
-
(1995)
Science
, vol.268
, pp. 83-87
-
-
Perkins, T.T.1
Smith, D.E.2
Larson, R.G.3
Chu, S.4
-
6
-
-
0032919143
-
Sequence-dependent mechanics of single DNA molecules
-
Rief,M., Clausen-Schaumann,H. and Gaub,H.E. (1999) Sequence-dependent mechanics of single DNA molecules. Nature Struct. Biol., 6, 346-349.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 346-349
-
-
Rief, M.1
Clausen-Schaumann, H.2
Gaub, H.E.3
-
7
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith,S.B., Cui,Y. and Bustamante,C. (1996) Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science, 271, 795-799.
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
8
-
-
0033548494
-
Single-polymer dynamics in steady shear flow
-
Smith,D.E., Babcock,H.P. and Chu,S. (1999) Single-polymer dynamics in steady shear flow. Science, 283, 1724-1727.
-
(1999)
Science
, vol.283
, pp. 1724-1727
-
-
Smith, D.E.1
Babcock, H.P.2
Chu, S.3
-
9
-
-
0031047888
-
Stretching DNA with optical tweezers
-
Wang,M.D., Yin,H., Landick,R., Gelles,J. and Block,S.M. (1997) Stretching DNA with optical tweezers. Biophys. J., 72, 1335-1346.
-
(1997)
Biophys. J.
, vol.72
, pp. 1335-1346
-
-
Wang, M.D.1
Yin, H.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
10
-
-
0036674122
-
Single molecule measurements of DNA transport through a nanopore
-
Meller,A. and Branton,D. (2002) Single molecule measurements of DNA transport through a nanopore. Electrophoresis, 23, 2583-2591.
-
(2002)
Electrophoresis
, vol.23
, pp. 2583-2591
-
-
Meller, A.1
Branton, D.2
-
11
-
-
0033980542
-
Rapid nanopore discrimination between single polynucleotide molecules
-
Meller,A., Nivon,L., Brandin,E., Golovchenko,J. and Branton,D. (2000) Rapid nanopore discrimination between single polynucleotide molecules. Proc. Natl Acad. Sci. USA, 97, 1079-1084.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 1079-1084
-
-
Meller, A.1
Nivon, L.2
Brandin, E.3
Golovchenko, J.4
Branton, D.5
-
12
-
-
0035831563
-
Voltage-driven DNA translocations through a nanopore
-
Meller,A., Nivon,L. and Branton,D. (2001) Voltage-driven DNA translocations through a nanopore. Phys. Rev. Lett., 86, 3435-3438.
-
(2001)
Phys. Rev. Lett.
, vol.86
, pp. 3435-3438
-
-
Meller, A.1
Nivon, L.2
Branton, D.3
-
13
-
-
0036672773
-
Evaluation of naropores as candidates for electronic analyte detection
-
Nakane,J., Akeson,M. and Marziali,A. (2002) Evaluation of naropores as candidates for electronic analyte detection. Electrophoresis, 23, 2592-2601.
-
(2002)
Electrophoresis
, vol.23
, pp. 2592-2601
-
-
Nakane, J.1
Akeson, M.2
Marziali, A.3
-
14
-
-
0035107270
-
Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
-
Vercoutere,W., Winters-Hilt,S., Olsen,H., Deamer,D., Haussler,D. and Akeson,M. (2001) Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nat. Biotechnol., 19, 248-252.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 248-252
-
-
Vercoutere, W.1
Winters-Hilt, S.2
Olsen, H.3
Deamer, D.4
Haussler, D.5
Akeson, M.6
-
15
-
-
0035403495
-
Nanopores with a spark for single-molecule detection
-
Wang,H. and Branton,D. (2001) Nanopores with a spark for single-molecule detection. Nat. Biotechnol., 19, 622-623.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 622-623
-
-
Wang, H.1
Branton, D.2
-
16
-
-
0030465241
-
Characterization of individual polynucleotide molecules using a membrane channel
-
Kasianowicz,J.J., Brandin,E., Branton,D. and Deamer,D.W. (1996) Characterization of individual polynucleotide molecules using a membrane channel. Proc. Natl Acad. Sci. USA, 93, 13770-13773.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 13770-13773
-
-
Kasianowicz, J.J.1
Brandin, E.2
Branton, D.3
Deamer, D.W.4
-
17
-
-
0032762996
-
Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
-
Akeson,M., Branton,D., Kasianowicz,J.J., Brandin,E. and Deamer,D.W. (1999) Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys. J., 77, 3227-3233.
-
(1999)
Biophys. J.
, vol.77
, pp. 3227-3233
-
-
Akeson, M.1
Branton, D.2
Kasianowicz, J.J.3
Brandin, E.4
Deamer, D.W.5
-
18
-
-
0034298597
-
Driven DNA transport into an asymmetric nanometer-scale pore
-
Henrickson,S.E., Misakian,M., Robertson,B. and Kasianowicz,J.J. (2000) Driven DNA transport into an asymmetric nanometer-scale pore. Phys. Rev. Lett., 85, 3057-3060.
-
(2000)
Phys. Rev. Lett.
, vol.85
, pp. 3057-3060
-
-
Henrickson, S.E.1
Misakian, M.2
Robertson, B.3
Kasianowicz, J.J.4
-
19
-
-
0034930381
-
Sequence-specific detection of individual DNA strands using engineered nanopores
-
Howorka,S., Cheley,S. and Bayley,H. (2001) Sequence-specific detection of individual DNA strands using engineered nanopores. Nat. Biotechnol., 19, 636-639.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 636-639
-
-
Howorka, S.1
Cheley, S.2
Bayley, H.3
-
20
-
-
0012169277
-
Use of a nanoscale pore to read short segments within single polynucleotide molecules
-
Kasianowicz,J.J., Kellermeyer.,M.S.Z. and Deamer,D.W. (eds) Kluwer Academic, Bikal, Hungary
-
Akeson,M., Deamer,D.W., Vercoutere,W., Braslau,R. and Olsen,H. (2002) Use of a nanoscale pore to read short segments within single polynucleotide molecules. In Kasianowicz,J.J., Kellermeyer.,M.S.Z. and Deamer,D.W. (eds), NATO Advanced Research Workshop on Polymer Structure and Transport in Confined Spaces. Kluwer Academic, Bikal, Hungary, Vol. 87, p. 390.
-
(2002)
NATO Advanced Research Workshop on Polymer Structure and Transport in Confined Spaces
, vol.87
, pp. 390
-
-
Akeson, M.1
Deamer, D.W.2
Vercoutere, W.3
Braslau, R.4
Olsen, H.5
-
21
-
-
0036797062
-
Characterization of nucleic acids by nanopore analysis
-
Deamer,D.W. and Branton,D. (2002) Characterization of nucleic acids by nanopore analysis. Acc. Chem. Res., 35, 817-825.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 817-825
-
-
Deamer, D.W.1
Branton, D.2
-
22
-
-
0002182178
-
Gene Express
-
Voss,D. (1999) Gene Express. New Scientist, 164, 40-43.
-
(1999)
New Scientist
, vol.164
, pp. 40-43
-
-
Voss, D.1
-
23
-
-
0037306228
-
Highly accurate classification of Watson-Crick base-pairs on termini of single DNA molecules
-
in press
-
Winters-Hilt,S., Vercoutere,W., DeGuzman,V., Deamer,D., Akeson,M. and Haussler,D. (2003) Highly accurate classification of Watson-Crick base-pairs on termini of single DNA molecules. Biophys. J., in press.
-
(2003)
Biophys. J.
-
-
Winters-Hilt, S.1
Vercoutere, W.2
DeGuzman, V.3
Deamer, D.4
Akeson, M.5
Haussler, D.6
-
24
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia,J. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia, J.1
-
25
-
-
0001908198
-
Fitting and statistical analysis of single-channel recordings
-
Sakmann,B. and Neher,E. (eds) Plenum Press, New York, NY
-
Colquhoun,D. and Sigworth,F.J. (1983) Fitting and statistical analysis of single-channel recordings. In Sakmann,B. and Neher,E. (eds), Single-Channel Recording. Plenum Press, New York, NY, pp. 191-263.
-
(1983)
Single-Channel Recording
, pp. 191-263
-
-
Colquhoun, D.1
Sigworth, F.J.2
-
26
-
-
0001908199
-
The principles of stochastic interpretation of ion-channel mechanisms
-
Sakmann,B. and Neher,E. (eds) Plenum Press, New York, NY
-
Colquhoun,D. and Hawkes,A.G. (1983) The principles of stochastic interpretation of ion-channel mechanisms. In Sakmann,B. and Neher,E. (eds), Single-Channel Recording. Plenum Press, New York, NY, pp. 135-175.
-
(1983)
Single-Channel Recording
, pp. 135-175
-
-
Colquhoun, D.1
Hawkes, A.G.2
-
27
-
-
0030447720
-
Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
-
Song,L., Hobaugh,M.R., Shustak,C., Cheley,S., Bayley,H. and Gouaux,J.E. (1996) Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore. Science, 274, 1859-1866.
-
(1996)
Science
, vol.274
, pp. 1859-1866
-
-
Song, L.1
Hobaugh, M.R.2
Shustak, C.3
Cheley, S.4
Bayley, H.5
Gouaux, J.E.6
-
28
-
-
0012173806
-
-
(3.01 edn). Pyramid Learning LLC, Hudson, OH
-
Michael,D. (1999) Chem-Site (3.01 edn). Pyramid Learning LLC, Hudson, OH.
-
(1999)
Chem-Site
-
-
Michael, D.1
-
29
-
-
0025808064
-
Stacking energies in DNA
-
Delcourt,S.G. and Blake,R.D. (1991) Stacking energies in DNA. J. Biol. Chem., 266, 15160-15169.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 15160-15169
-
-
Delcourt, S.G.1
Blake, R.D.2
-
30
-
-
0026899849
-
Studies of DNA dumbbells. 1. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops - Evaluation of the nearest-neighbor stacking interactions in DNA
-
Doktycz,M.J., Goldstein,R.F., Paner,T.M., Gallo,F.J. and Benight,A.S. (1992) Studies of DNA dumbbells. 1. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops - evaluation of the nearest-neighbor stacking interactions in DNA. Biopolymers, 32, 849-864.
-
(1992)
Biopolymers
, vol.32
, pp. 849-864
-
-
Doktycz, M.J.1
Goldstein, R.F.2
Paner, T.M.3
Gallo, F.J.4
Benight, A.S.5
-
31
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer,K.J., Frank,R., Blöcker,H. and Marky,L.A. (1986) Predicting DNA duplex stability from the base sequence. Proc. Natl Acad. Sci. USA, 83, 3746-3750.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blöcker, H.3
Marky, L.A.4
-
32
-
-
84985667623
-
Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles
-
Gotoh,O. and Tgashira,Y. (1981) Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles. Biopolymers, 20, 1033-1042.
-
(1981)
Biopolymers
, vol.20
, pp. 1033-1042
-
-
Gotoh, O.1
Tgashira, Y.2
-
33
-
-
0029968822
-
Improved nearest-neighbor parameters for predicting DNA duplex stability
-
Santalucia,J., Allawi,H.T. and Seneviratne,A. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry, 35, 3555-3562.
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
Santalucia, J.1
Allawi, H.T.2
Seneviratne, A.3
-
34
-
-
0021189006
-
Allowance for heterogeneous stacking in the DNA helix-coil transition theory
-
Vologodskii,A.V., Amirikyan,B.R., Lyubchenko,Y.L. and Frank-Kamenetskii,M.D. (1984) Allowance for heterogeneous stacking in the DNA helix-coil transition theory. J. Biomol. Struct. Dyn., 2, 131-148.
-
(1984)
J. Biomol. Struct. Dyn.
, vol.2
, pp. 131-148
-
-
Vologodskii, A.V.1
Amirikyan, B.R.2
Lyubchenko, Y.L.3
Frank-Kamenetskii, M.D.4
-
35
-
-
0029859713
-
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
-
Sugimoto,N., Nakano,S., Yoneyama,M. and Honda,K. (1996) Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res., 24, 4501-4505.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4501-4505
-
-
Sugimoto, N.1
Nakano, S.2
Yoneyama, M.3
Honda, K.4
-
36
-
-
0034979126
-
Hydrogen bonding, base stacking, and steric effects in DNA replication
-
Kool,E.T. (2001) Hydrogen bonding, base stacking, and steric effects in DNA replication. Annu. Rev. Biophys. Biomol. Struct., 30, 1-22.
-
(2001)
Annu. Rev. Biophys. Biomol. Struct.
, vol.30
, pp. 1-22
-
-
Kool, E.T.1
-
37
-
-
0032491819
-
Highly precise shape mimicry by a difluorotoluene deoxynucleoside, a replication-competent substitute for thymidine
-
Guckian,K.M. and Kool,E.T. (1998) Highly precise shape mimicry by a difluorotoluene deoxynucleoside, a replication-competent substitute for thymidine. Angew. Chem. Int. Ed. Engl., 36, 2825-2828.
-
(1998)
Angew. Chem. Int. Ed. Engl.
, vol.36
, pp. 2825-2828
-
-
Guckian, K.M.1
Kool, E.T.2
-
38
-
-
0034646194
-
Importance of terminal base pair hydrogen-bonding in 3′-end proofreading by the Klenow fragment of DNA polymerase I
-
Morales,J.C. and Kool,E.T. (2000) Importance of terminal base pair hydrogen-bonding in 3′-end proofreading by the Klenow fragment of DNA polymerase I. Biochemistry, 39, 2626-2632.
-
(2000)
Biochemistry
, vol.39
, pp. 2626-2632
-
-
Morales, J.C.1
Kool, E.T.2
-
39
-
-
0030967829
-
A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity
-
Moran,S., Ren,R.X.F. and Kool,E.T. (1997) A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity. Proc. Natl Acad. Sci. USA, 94, 10506-10511.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 10506-10511
-
-
Moran, S.1
Ren, R.X.F.2
Kool, E.T.3
-
40
-
-
0034194135
-
Thermodynamic parameters for DNA sequences with dangling ends
-
Bommarito,S., Peyret,N. and SantaLucia,J. (2000) Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res., 28, 1929-1934.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1929-1934
-
-
Bommarito, S.1
Peyret, N.2
SantaLucia, J.3
-
41
-
-
0034654495
-
Factors contributing to aromatic stacking in water: Evaluation in the context of DNA
-
Guckian,K.M., Schweitzer,B.A., Ren,R.X.F., Sheils,C.J., Tahmassebi,D.C. and Kool,E.T. (2000) Factors contributing to aromatic stacking in water: evaluation in the context of DNA. J. Am. Chem. Soc., 122, 2213-2222.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 2213-2222
-
-
Guckian, K.M.1
Schweitzer, B.A.2
Ren, R.X.F.3
Sheils, C.J.4
Tahmassebi, D.C.5
Kool, E.T.6
|