-
1
-
-
4644237751
-
Enzymatic reactions involving novel mechanisms of carbanion stabilization
-
Begley, T. P. and Ealick, S. E. (2004) Enzymatic reactions involving novel mechanisms of carbanion stabilization. Curr. Opin. Chem. Biol. 8, 508-515
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 508-515
-
-
Begley, T.P.1
Ealick, S.E.2
-
2
-
-
9744241004
-
The enzymes of oxalate metabolism: Unexpected structures and mechanisms
-
Svedruzic, D., Jonsson, S., Toyota, C. G., Reinhardt, L. A., Ricagno, S., Linqvist, Y. and Richards, N. G. J. (2005) The enzymes of oxalate metabolism: unexpected structures and mechanisms. Arch. Biochem. Biophys. 433, 176-192
-
(2005)
Arch. Biochem. Biophys
, vol.433
, pp. 176-192
-
-
Svedruzic, D.1
Jonsson, S.2
Toyota, C.G.3
Reinhardt, L.A.4
Ricagno, S.5
Linqvist, Y.6
Richards, N.G.J.7
-
3
-
-
0033817325
-
Bacillus subtilis YvrK is an acid-induced oxalate decarboxylase
-
Tanner, A. and Bornemann, S. (2000) Bacillus subtilis YvrK is an acid-induced oxalate decarboxylase. J. Bacteriol. 182, 5271-5273
-
(2000)
J. Bacteriol
, vol.182
, pp. 5271-5273
-
-
Tanner, A.1
Bornemann, S.2
-
4
-
-
33847373765
-
The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis
-
Antelmann, H., Towe, S., Albrecht, D. and Hecker, M. (2007) The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis. J. Proteome Res. 6, 897-903
-
(2007)
J. Proteome Res
, vol.6
, pp. 897-903
-
-
Antelmann, H.1
Towe, S.2
Albrecht, D.3
Hecker, M.4
-
5
-
-
0035941286
-
Oxalate decarboxylase requires manganese and dioxygen for activity: Overexpression and characterization of Bacillus subtilis YvrK and YoaN
-
Tanner, A., Bowater, L., Fairhurst, S. A. and Bornemann, S. (2001) Oxalate decarboxylase requires manganese and dioxygen for activity: overexpression and characterization of Bacillus subtilis YvrK and YoaN. J. Biol. Chem. 276, 43627-43634
-
(2001)
J. Biol. Chem
, vol.276
, pp. 43627-43634
-
-
Tanner, A.1
Bowater, L.2
Fairhurst, S.A.3
Bornemann, S.4
-
6
-
-
0347785486
-
Heavy atom isotope effects on the reaction catalyzed by the oxalate decarboxylase from Bacillus subtilis
-
Reinhardt, L. A., Svedruzic, D., Chang, C. H., Cleland, W. W. and Richards, N. G. J. (2003) Heavy atom isotope effects on the reaction catalyzed by the oxalate decarboxylase from Bacillus subtilis. J. Am. Chem. Soc. 125, 1244-1252
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 1244-1252
-
-
Reinhardt, L.A.1
Svedruzic, D.2
Chang, C.H.3
Cleland, W.W.4
Richards, N.G.J.5
-
7
-
-
34447644225
-
Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis
-
Svedruzic, D., Liu, Y., Reinhardt, L. A., Wroclawska, E., Cleland, W. W. and Richards, N. G. J. (2007) Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis. Arch. Biochem. Biophys. 464, 36-47
-
(2007)
Arch. Biochem. Biophys
, vol.464
, pp. 36-47
-
-
Svedruzic, D.1
Liu, Y.2
Reinhardt, L.A.3
Wroclawska, E.4
Cleland, W.W.5
Richards, N.G.J.6
-
8
-
-
11144220822
-
EPR spectroscopic characterization of the manganese center and a free radical in the oxalate decarboxylase reaction: Identification of a tyrosyl radical during turnover
-
Chang, C. H., Svedruzic, D., Ozarowski, A., Walker, L., Yeagle, G., Britt, R. D., Angerhofer, A. and Richards, N. G. J. (2004) EPR spectroscopic characterization of the manganese center and a free radical in the oxalate decarboxylase reaction: identification of a tyrosyl radical during turnover. J. Biol. Chem. 279, 52840-52849
-
(2004)
J. Biol. Chem
, vol.279
, pp. 52840-52849
-
-
Chang, C.H.1
Svedruzic, D.2
Ozarowski, A.3
Walker, L.4
Yeagle, G.5
Britt, R.D.6
Angerhofer, A.7
Richards, N.G.J.8
-
9
-
-
34249780857
-
Multifrequency EPR studies on the Mn(II) centers of oxalate decarboxylase
-
Angerhofer, A., Moomaw, E. W., Garcia-Rubio, I., Ozarowski, A., Krzystek, J., Weber, R. T. and Richards, N. G. J. (2007) Multifrequency EPR studies on the Mn(II) centers of oxalate decarboxylase. J. Phys. Chem. B 111, 5043-5046
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 5043-5046
-
-
Angerhofer, A.1
Moomaw, E.W.2
Garcia-Rubio, I.3
Ozarowski, A.4
Krzystek, J.5
Weber, R.T.6
Richards, N.G.J.7
-
10
-
-
33748249140
-
Intrinsic carbon-carbon bond reactivity at the manganese center of oxalate decarboxylase from density functional theory
-
Chang, C. H. and Richards, N. G. J. (2005) Intrinsic carbon-carbon bond reactivity at the manganese center of oxalate decarboxylase from density functional theory. J. Chem. Theory Comput. 1, 994-1007
-
(2005)
J. Chem. Theory Comput
, vol.1
, pp. 994-1007
-
-
Chang, C.H.1
Richards, N.G.J.2
-
11
-
-
0037129976
-
Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 Å resolution
-
Anand, R., Dorrestein, P. C., Kinsland, C., Begley, T. P. and Ealick, S. E. (2002) Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 Å resolution. Biochemistry 41, 7659-7669
-
(2002)
Biochemistry
, vol.41
, pp. 7659-7669
-
-
Anand, R.1
Dorrestein, P.C.2
Kinsland, C.3
Begley, T.P.4
Ealick, S.E.5
-
12
-
-
2442429480
-
A closed conformation of Bacillus subtilis oxalate decarboxylase OxdC provides evidence for the true identity of the active site
-
Just, V. J., Stevenson, C. E. M., Bowater, L., Tanner, A., Lawson, D. M. and Bornemann, S. (2004) A closed conformation of Bacillus subtilis oxalate decarboxylase OxdC provides evidence for the true identity of the active site. J. Biol. Chem. 279, 19867-19874
-
(2004)
J. Biol. Chem
, vol.279
, pp. 19867-19874
-
-
Just, V.J.1
Stevenson, C.E.M.2
Bowater, L.3
Tanner, A.4
Lawson, D.M.5
Bornemann, S.6
-
13
-
-
0033214111
-
Barley (Hordeum vulgare) oxalate oxidase is a manganese-containing enzyme
-
Requena, L. and Bornemann, S. (1999) Barley (Hordeum vulgare) oxalate oxidase is a manganese-containing enzyme. Biochem. J. 343, 185-190
-
(1999)
Biochem. J
, vol.343
, pp. 185-190
-
-
Requena, L.1
Bornemann, S.2
-
14
-
-
0031888149
-
Microbial relatives of seed storage proteins: Conservation of motifs in a functionally diverse superfamily of enzymes
-
Dunwell, J. M. and Gane, P. J. (1998) Microbial relatives of seed storage proteins: conservation of motifs in a functionally diverse superfamily of enzymes. J. Mol. Evol. 46, 147-154
-
(1998)
J. Mol. Evol
, vol.46
, pp. 147-154
-
-
Dunwell, J.M.1
Gane, P.J.2
-
15
-
-
0031979636
-
Modeling based on the structure of vicilins predicts a histidine cluster in the active site of oxalate oxidase
-
Gane, P. J., Dunwell, J. M. and Warwicker, J. (1998) Modeling based on the structure of vicilins predicts a histidine cluster in the active site of oxalate oxidase. J. Mol. Evol. 46, 488-493
-
(1998)
J. Mol. Evol
, vol.46
, pp. 488-493
-
-
Gane, P.J.1
Dunwell, J.M.2
Warwicker, J.3
-
16
-
-
0033766314
-
Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities
-
Woo, E. J., Dunwell, J. M., Goodenough, P. W., Marvier, A. C. and Pickersgill, R. W. (2000) Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities. Nat. Struct. Biol. 7, 1036-1040
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 1036-1040
-
-
Woo, E.J.1
Dunwell, J.M.2
Goodenough, P.W.3
Marvier, A.C.4
Pickersgill, R.W.5
-
17
-
-
33646576206
-
Structural and spectroscopic studies shed light on the mechanism of oxalate oxidase
-
Opaleye, O., Rose, R. S., Whittaker, M. M., Woo, E. J., Whittaker, J. W. and Pickersgill, R. W. (2006) Structural and spectroscopic studies shed light on the mechanism of oxalate oxidase. J. Biol. Chem. 281, 6428-6433
-
(2006)
J. Biol. Chem
, vol.281
, pp. 6428-6433
-
-
Opaleye, O.1
Rose, R.S.2
Whittaker, M.M.3
Woo, E.J.4
Whittaker, J.W.5
Pickersgill, R.W.6
-
18
-
-
0036371346
-
Characterization of recombinant barley oxalate oxidase expressed by Pichia pastoris
-
Whittaker, M. M. and Whittaker, J. W. (2002) Characterization of recombinant barley oxalate oxidase expressed by Pichia pastoris. J. Biol. Inorg. Chem. 7, 136-145
-
(2002)
J. Biol. Inorg. Chem
, vol.7
, pp. 136-145
-
-
Whittaker, M.M.1
Whittaker, J.W.2
-
19
-
-
33748260905
-
Catalytic reaction mechanism of oxalate oxidase (germin). A hybrid DFT study
-
Borowski, T., Bassan, A., Richards, N. G. J. and Siegbahn, P. E. M. (2005) Catalytic reaction mechanism of oxalate oxidase (germin). A hybrid DFT study. J. Chem. Theory Comput. 1, 686-693
-
(2005)
J. Chem. Theory Comput
, vol.1
, pp. 686-693
-
-
Borowski, T.1
Bassan, A.2
Richards, N.G.J.3
Siegbahn, P.E.M.4
-
20
-
-
34047106233
-
Burst kinetics and redox transformations of the active site manganese ion in oxalate oxidase: Implications tor the catalytic mechanism
-
Whittaker, M. M., Pan, H. Y., Yukl, E. T. and Whittaker, J. W. (2007) Burst kinetics and redox transformations of the active site manganese ion in oxalate oxidase: implications tor the catalytic mechanism. J. Biol. Chem. 282, 7011-7023
-
(2007)
J. Biol. Chem
, vol.282
, pp. 7011-7023
-
-
Whittaker, M.M.1
Pan, H.Y.2
Yukl, E.T.3
Whittaker, J.W.4
-
21
-
-
22144459829
-
Cloning and sequencing of two Ceriporiopsis subvermispora bicupin oxalate oxidase allelic isoforms: Implications for the reaction specificity of oxalate oxidases and decarboxylases
-
Escutia, M. R., Bowater, L., Edwards, A., Bottrill, A. R., Burrell, M. R., Polanco, R., Vicuna, R. and Bornemann, S. (2005) Cloning and sequencing of two Ceriporiopsis subvermispora bicupin oxalate oxidase allelic isoforms: implications for the reaction specificity of oxalate oxidases and decarboxylases. Appl. Environ. Microbiol. 71, 3608-3616
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 3608-3616
-
-
Escutia, M.R.1
Bowater, L.2
Edwards, A.3
Bottrill, A.R.4
Burrell, M.R.5
Polanco, R.6
Vicuna, R.7
Bornemann, S.8
-
22
-
-
0029660710
-
Oxalate production by fungi: Its role in pathogenicity and ecology in the soil environment
-
Dutton, M. V. and Evans, C. S. (1996) Oxalate production by fungi: its role in pathogenicity and ecology in the soil environment. Can. J. Microbiol. 42, 881-895
-
(1996)
Can. J. Microbiol
, vol.42
, pp. 881-895
-
-
Dutton, M.V.1
Evans, C.S.2
-
23
-
-
0034096459
-
Microbial relatives of the seed storage proteins of higher plants: Conservation of structure and diversification of function during evolution of the cupin superfamily
-
Dunwell, J. M., Khuri, S. and Gane, P. J. (2000) Microbial relatives of the seed storage proteins of higher plants: conservation of structure and diversification of function during evolution of the cupin superfamily Microbiol. Mol. Biol. Rev. 64, 153-179
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 153-179
-
-
Dunwell, J.M.1
Khuri, S.2
Gane, P.J.3
-
26
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4
-
Collaborative Computational Project Number 4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr. Sect. D Biol. Crystallogr
, vol.50
, pp. 760-763
-
-
-
27
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B. W. (1968) Solvent content of protein crystals. J. Mol. Biol. 33, 491-497
-
(1968)
J. Mol. Biol
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
28
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A. and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
-
(1997)
Acta Crystallogr. Sect. D Biol. Crystallogr
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
29
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W. and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. Sect. D Biol. Crystallogr. 47, 110-119
-
(1991)
Acta Crystallogr. Sect. D Biol. Crystallogr
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
31
-
-
84944812409
-
Improved Fourier coefficients for maps using phases from partial structures with errors
-
Read, R. J. (1986) Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr. Sect. A Found. Crystallogr. 42, 140-149
-
(1986)
Acta Crystallogr. Sect. A Found. Crystallogr
, vol.42
, pp. 140-149
-
-
Read, R.J.1
-
32
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex, N. and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18, 2714-2723
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
33
-
-
33748272936
-
Real-time monitoring of the oxalate decarboxylase reaction and probing hydrogen exchange in the product, formate, using Fourier transform infrared spectroscopy
-
Muthusamy, M., Burrell, M. R., Thorneley, R. N. F. and Bornemann, S. (2006) Real-time monitoring of the oxalate decarboxylase reaction and probing hydrogen exchange in the product, formate, using Fourier transform infrared spectroscopy. Biochemistry 45, 10667-10673
-
(2006)
Biochemistry
, vol.45
, pp. 10667-10673
-
-
Muthusamy, M.1
Burrell, M.R.2
Thorneley, R.N.F.3
Bornemann, S.4
-
35
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., Macarthur, M. W., Moss, D. S. and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
|