메뉴 건너뛰기




Volumn 24, Issue 1, 2007, Pages 147-164

Mass spectrometry-based quantitative proteomics

Author keywords

[No Author keywords available]

Indexed keywords

QUANTITATIVE PROTEOMICS;

EID: 35648997010     PISSN: 02648725     EISSN: 20465556     Source Type: Journal    
DOI: 10.1080/02648725.2007.10648097     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 0034868043 scopus 로고    scopus 로고
    • Selective analysis of phosphopeptides within a protein mixture by chemical modification, reversible biotinylation and mass spectrometry
    • Adamczyk, M., Gebler, J.C., and Wu, J., 2001. Selective analysis of phosphopeptides within a protein mixture by chemical modification, reversible biotinylation and mass spectrometry. Rapid Commun. Mass Spectrom, 15:1481–1488.
    • (2001) Rapid Commun. Mass Spectrom , vol.15 , pp. 1481-1488
    • Adamczyk, M.1    Gebler, J.C.2    Wu, J.3
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold, R, and Mann, M., 2003. Mass spectrometry-based proteomics. Nature, 422:198–207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 4
    • 33749523582 scopus 로고    scopus 로고
    • Organellar proteomics: Turning inventories into insights
    • Andersen, J.S., and Mann, M., 2006. Organellar proteomics:turning inventories into insights. EMBO Rep, 7:874–879.
    • (2006) EMBO Rep , vol.7 , pp. 874-879
    • Andersen, J.S.1    Mann, M.2
  • 5
    • 0037337310 scopus 로고    scopus 로고
    • A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
    • Blagoev, B., Kratchmarova, I., Ong, S.E., Nielsen, M., Foster, L.J., and Mann, M., 2003. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nature Biotechnol, 21:315–318.
    • (2003) Nature Biotechnol , vol.21 , pp. 315-318
    • Blagoev, B.1    Kratchmarova, I.2    Ong, S.E.3    Nielsen, M.4    Foster, L.J.5    Mann, M.6
  • 6
    • 0037106398 scopus 로고    scopus 로고
    • Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry
    • Bondarenko, P.V., Chelius, D., and Shaler, T.A., 2002. Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry. Anal. Chem, 74:4741–4749.
    • (2002) Anal. Chem , vol.74 , pp. 4741-4749
    • Bondarenko, P.V.1    Chelius, D.2    Shaler, T.A.3
  • 8
    • 0036665581 scopus 로고    scopus 로고
    • Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry
    • Chelius, D., and Bondarenko, P.V., 2002. Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry. J. Proteome Res, 1:317–323.
    • (2002) J. Proteome Res , vol.1 , pp. 317-323
    • Chelius, D.1    Bondarenko, P.V.2
  • 9
    • 0026655026 scopus 로고
    • Quantitative analytical mass spectrometry of endogenous neuropeptides in human pituitaries
    • Desiderio, D.M., 1992. Quantitative analytical mass spectrometry of endogenous neuropeptides in human pituitaries. Life Science, 51:169–176.
    • (1992) Life Science , vol.51 , pp. 169-176
    • Desiderio, D.M.1
  • 10
    • 33645813378 scopus 로고    scopus 로고
    • Mass spectrometry and protein analysis
    • Domon, B., and Aebersold, R., 2006. Mass spectrometry and protein analysis. Science, 312:212–217.
    • (2006) Science , vol.312 , pp. 212-217
    • Domon, B.1    Aebersold, R.2
  • 11
    • 24044513966 scopus 로고    scopus 로고
    • Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    • Elias, J.E., Haas, W., Faherty, B.K., and Gygi, S.P., 2005. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nature Methods, 2:667–675.
    • (2005) Nature Methods , vol.2 , pp. 667-675
    • Elias, J.E.1    Haas, W.2    Faherty, B.K.3    Gygi, S.P.4
  • 12
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields, S., and Song, O., 1989. A novel genetic system to detect protein-protein interactions. Nature, 340:245–246.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 13
    • 10644230916 scopus 로고    scopus 로고
    • Current two-dimensional electrophoresis technology for proteomics
    • Gorg, A., Weiss, W., and Dunn, M.J., 2004. Current two-dimensional electrophoresis technology for proteomics. Proteomics, 4:3665–3685.
    • (2004) Proteomics , vol.4 , pp. 3665-3685
    • Gorg, A.1    Weiss, W.2    Dunn, M.J.3
  • 14
    • 0035356565 scopus 로고    scopus 로고
    • Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses
    • Goshe, M.B., Conrads, T.P., Panisko, E.A., Angell, N.H., Veenstra, T.D., and Smith, R.D., 2001. Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses. Anal Chem, 73:2578–2586.
    • (2001) Anal Chem , vol.73 , pp. 2578-2586
    • Goshe, M.B.1    Conrads, T.P.2    Panisko, E.A.3    Angell, N.H.4    Veenstra, T.D.5    Smith, R.D.6
  • 15
    • 33644670152 scopus 로고    scopus 로고
    • An integrated mass spectrometry-based proteomic approach: Quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26S proteasome-interacting network
    • Guerrero, C., Tagwerker, C., Kaiser, P., and Huang, L., 2006. An integrated mass spectrometry-based proteomic approach:quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26S proteasome-interacting network. Mol. Cell Proteomics, 5:366–378.
    • (2006) Mol. Cell Proteomics , vol.5 , pp. 366-378
    • Guerrero, C.1    Tagwerker, C.2    Kaiser, P.3    Huang, L.4
  • 16
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi, S.P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M.H., and Aebersold, R., 1999. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotechnol, 17:994–999.
    • (1999) Nature Biotechnol , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 17
    • 0347334566 scopus 로고    scopus 로고
    • Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography
    • Hansen, K.C., Schmitt-Ulms, G., Chalkley, R.J., Hirsch, J., Baldwin, M.A., and Burlingame, A.L., 2003. Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography. Mol Cell Proteomic, 2:299–314.
    • (2003) Mol Cell Proteomic , vol.2 , pp. 299-314
    • Hansen, K.C.1    Schmitt-Ulms, G.2    Chalkley, R.J.3    Hirsch, J.4    Baldwin, M.A.5    Burlingame, A.L.6
  • 18
    • 23944472666 scopus 로고    scopus 로고
    • Comprehensive label-free method for the relative quantification of proteins from biological samples
    • Higgs, R.E., Knierman, M.D., Gelfanova, V., Butler., J.P., and Hale, J.E., 2005. Comprehensive label-free method for the relative quantification of proteins from biological samples. J. Proteome Res, 4:1442–1450.
    • (2005) J. Proteome Res , vol.4 , pp. 1442-1450
    • Higgs, R.E.1    Knierman, M.D.2    Gelfanova, V.3    Butler, J.P.4    Hale, J.E.5
  • 19
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J., and Mann, M., 2005a. Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell Proteomics, 4:1265–1272.
    • (2005) Mol. Cell Proteomics , vol.4 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5    Rappsilber, J.6    Mann, M.7
  • 20
    • 22844436250 scopus 로고    scopus 로고
    • Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
    • Ishihama, Y., Sato, T., Tabata, T., Miyamoto, N., Sagane, K., Nagasu, T., and Oda, Y., 2005b. Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nature Biotechnol, 23:617–621.
    • (2005) Nature Biotechnol , vol.23 , pp. 617-621
    • Ishihama, Y.1    Sato, T.2    Tabata, T.3    Miyamoto, N.4    Sagane, K.5    Nagasu, T.6    Oda, Y.7
  • 22
    • 0031008404 scopus 로고    scopus 로고
    • Development of an isotope dilution assay for precise determination of insulin, C-peptide, and proinsulin levels in non-diabetic and type II diabetic individuals with comparison to immunoassay
    • Kippen, A.D., Cerini, F., Vadas, L., Stocklin, R., Vu, L., Offord, R.E., and Rose, K., 1997. Development of an isotope dilution assay for precise determination of insulin, C-peptide, and proinsulin levels in non-diabetic and type II diabetic individuals with comparison to immunoassay. J. Biol. Chem, 272:12513–12522.
    • (1997) J. Biol. Chem , vol.272 , pp. 12513-12522
    • Kippen, A.D.1    Cerini, F.2    Vadas, L.3    Stocklin, R.4    Vu, L.5    Offord, R.E.6    Rose, K.7
  • 23
    • 23744460968 scopus 로고    scopus 로고
    • Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis
    • Kokubu, M., Ishihama, Y., Sat o, T., Nagasu, T., and Oda, Y., 2005. Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis. Anal Chem, 77:5144–5154.
    • (2005) Anal Chem , vol.77 , pp. 5144-5154
    • Kokubu, M.1    Ishihama, Y.2    Sato, T.3    Nagasu, T.4    Oda, Y.5
  • 24
    • 0025049859 scopus 로고
    • Fast atom bombardment mass spectrometric quantitative analysis of methionine-enkephalin in human pituitary tissues
    • Kusmierz, J.J., Sumrada, R., and Desiderio, D.M., 1990. Fast atom bombardment mass spectrometric quantitative analysis of methionine-enkephalin in human pituitary tissues. Anal. Chem, 62:2395–2400.
    • (1990) Anal. Chem , vol.62 , pp. 2395-2400
    • Kusmierz, J.J.1    Sumrada, R.2    Desiderio, D.M.3
  • 25
    • 0037224514 scopus 로고    scopus 로고
    • Large-scale proteomic analysis of the human spliceosome
    • Lamond, A.I., and Mann, M., 2002. Large-scale proteomic analysis of the human spliceosome. Genome Res, 12:1231–1245.
    • (2002) Genome Res , vol.12 , pp. 1231-1245
    • Lamond, A.I.1    Mann, M.2
  • 27
    • 26844492976 scopus 로고    scopus 로고
    • A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry
    • Li, X.J., Yi, E.C., Kemp, C.J., Zhang, H., and Aebersold., R., 2005. A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry. Mol Cell Proteomics, 4:1328–1340.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1328-1340
    • Li, X.J.1    Yi, E.C.2    Kemp, C.J.3    Zhang, H.4    Aebersold, R.5
  • 28
    • 3042608563 scopus 로고    scopus 로고
    • Phosphoproteomic fingerprinting of epidermal growth factor signaling and anticancer drug action in human tumor cells
    • Lim, Y.P., Diong, L.S., Qi, R., Druker, B.J., and Epstein, R.J., 2003. Phosphoproteomic fingerprinting of epidermal growth factor signaling and anticancer drug action in human tumor cells. Mol. Cancer Ther, 2:1369–1377.
    • (2003) Mol. Cancer Ther , vol.2 , pp. 1369-1377
    • Lim, Y.P.1    Diong, L.S.2    Qi, R.3    Druker, B.J.4    Epstein, R.J.5
  • 29
    • 0033915395 scopus 로고    scopus 로고
    • Quantitation of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry using (18)O-labeled internal standards
    • Mirgorodskaya, O.A., Kozmin, Y.P., Titov, M.I., Korner, R., Sonksen, C.P., and Roepstorff, P., 2000. Quantitation of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry using (18)O-labeled internal standards. Rapid Commun Mass Spectrom, 14:1226–1232.
    • (2000) Rapid Commun Mass Spectrom , vol.14 , pp. 1226-1232
    • Mirgorodskaya, O.A.1    Kozmin, Y.P.2    Titov, M.I.3    Korner, R.4    Sonksen, C.P.5    Roepstorff, P.6
  • 31
    • 33750112777 scopus 로고    scopus 로고
    • Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications
    • Ndassa, Y.M., Orsi, C., Marto, J.A., Chen, S., and Ross, M.M., 2006. Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications. J. Proteome Res, 5:2789–2799.
    • (2006) J. Proteome Res , vol.5 , pp. 2789-2799
    • Ndassa, Y.M.1    Orsi, C.2    Marto, J.A.3    Chen, S.4    Ross, M.M.5
  • 32
    • 0033535961 scopus 로고    scopus 로고
    • Accurate quantitation of protein expression and site-specific phosphorylation
    • Oda, Y., Huang, K., Cross, F.R., Cowburn, D., and Chait, B.T., 1999. Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. USA, 96:6591–6596.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6591-6596
    • Oda, Y.1    Huang, K.2    Cross, F.R.3    Cowburn, D.4    Chait, B.T.5
  • 33
    • 0035067251 scopus 로고    scopus 로고
    • Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
    • Oda, Y., Nagasu, T., and Chait, B.T., 2001. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nature. Biotechnol, 19:379–382.
    • (2001) Nature. Biotechnol , vol.19 , pp. 379-382
    • Oda, Y.1    Nagasu, T.2    Chait, B.T.3
  • 36
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S.E., Blagoev, B., Kratchmarova, I., Kristensen, D.B., Steen, H., Pandey, A., and Mann, M., 2002. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics, 1:376–86.
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 37
    • 0142040631 scopus 로고    scopus 로고
    • Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures
    • Qian, W.J., Goshe, M.B., Camp, D.G., 2nd, Yu, L.R., Tang, K., and Smith, R.D., 2003. Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures. Anal Chem, 75:5441–5450.
    • (2003) Anal Chem , vol.75 , pp. 5441-5450
    • Qian, W.J.1    Goshe, M.B.2    Camp, D.G.3    Yu, L.R.4    Tang, K.5    Smith, R.D.6
  • 40
    • 0036535119 scopus 로고    scopus 로고
    • Quantitative dynamics of site-specific protein phosphorylation determined using liquid chromatography electrospray ionization mass spectrometry
    • Ruse, C.I., Willard, B., Jin, J.P., Haas, T., Kinter, M., and Bond, M., 2002. Quantitative dynamics of site-specific protein phosphorylation determined using liquid chromatography electrospray ionization mass spectrometry. Anal. Chem, 74:1658–1664.
    • (2002) Anal. Chem , vol.74 , pp. 1658-1664
    • Ruse, C.I.1    Willard, B.2    Jin, J.P.3    Haas, T.4    Kinter, M.5    Bond, M.6
  • 42
    • 0035861914 scopus 로고    scopus 로고
    • Dual inhibition of sister chromatid separation at metaphase
    • Stemmann, O., Zou, H., Gerber, S.A., Gygi, S.P., and Kirschner, M.W., 2001. Dual inhibition of sister chromatid separation at metaphase. Cell, 107:715–726.
    • (2001) Cell , vol.107 , pp. 715-726
    • Stemmann, O.1    Zou, H.2    Gerber, S.A.3    Gygi, S.P.4    Kirschner, M.W.5
  • 43
    • 0029752755 scopus 로고    scopus 로고
    • Detection and quantification of amyloid beta protein and variants by immunoprecipitation-mass spectrometry
    • Wang, R., Sweeney, D., Gandy, S.E., and Sisodia, S.S., 1996. Detection and quantification of amyloid beta protein and variants by immunoprecipitation-mass spectrometry. J. Biol. Chem, 271:31894–31902.
    • (1996) J. Biol. Chem , vol.271 , pp. 31894-31902
    • Wang, R.1    Sweeney, D.2    Gandy, S.E.3    Sisodia, S.S.4
  • 44
    • 10744233766 scopus 로고    scopus 로고
    • Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
    • Wang, W., Zhou, H., Lin, H., Roy, S., Shaler, T.A., Hill, L.R., Norton, S., Kumar, P., Anderle, M., and Becker, C.H., 2003. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal. Chem, 75:4818–4826.
    • (2003) Anal. Chem , vol.75 , pp. 4818-4826
    • Wang, W.1    Zhou, H.2    Lin, H.3    Roy, S.4    Shaler, T.A.5    Hill, L.R.6    Norton, S.7    Kumar, P.8    Anderle, M.9    Becker, C.H.10
  • 45
    • 0035413269 scopus 로고    scopus 로고
    • Inverse 18O labeling mass spectrometry for the rapid identification of marker/target proteins
    • Wang, Y.K., Ma, Z., Quinn, D.F., and Fu, E.W., 2001. Inverse 18O labeling mass spectrometry for the rapid identification of marker/target proteins. Anal Chem, 73:3742–50.
    • (2001) Anal Chem , vol.73 , pp. 3742-3750
    • Wang, Y.K.1    Ma, Z.2    Quinn, D.F.3    Fu, E.W.4
  • 46
    • 6044226889 scopus 로고    scopus 로고
    • Differential mass spectrometry: A label-free LC-MS method for finding significant differences in complex peptide and protein mixtures
    • Wiener, M.C., Sachs, J.R., Deyanova, E.G., and Yates, N.A., 2004. Differential mass spectrometry:a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures. Anal. Chem, 76:6085–6096.
    • (2004) Anal. Chem , vol.76 , pp. 6085-6096
    • Wiener, M.C.1    Sachs, J.R.2    Deyanova, E.G.3    Yates, N.A.4
  • 47
    • 4444346217 scopus 로고    scopus 로고
    • Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
    • Wu, C.C., MacCoss, M.J., Howell, K.E., Matthews, D.E., and Yates, J.R., 3rd. 2004. Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. Anal Chem, 76:4951–4959.
    • (2004) Anal Chem , vol.76 , pp. 4951-4959
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Matthews, D.E.4    Yates, J.R.5
  • 48
    • 0035384687 scopus 로고    scopus 로고
    • Proteolytic 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
    • Erratum in: Anal Chem. (2004) 76 2675
    • Yao, X., Freas, A., Ramirez, J., Demirev, P.A., and Fenselau, C., 2001. Proteolytic 18O labeling for comparative proteomics:model studies with two serotypes of adenovirus. Anal Chem, 73:2836–2842. Erratum in:Anal Chem. (2004) 76 2675
    • (2001) Anal Chem , vol.73 , pp. 2836-2842
    • Yao, X.1    Freas, A.2    Ramirez, J.3    Demirev, P.A.4    Fenselau, C.5
  • 49
    • 20944444686 scopus 로고    scopus 로고
    • Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme
    • Yi, E.C., Li, X.J., Cooke, K., Lee, H., Raught, B., Page, A., Aneliunas, V., Hieter, P., Goodlett, D.R., and Aebersold, R., 2003. Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme. Proteomics, 5:380–387.
    • (2003) Proteomics , vol.5 , pp. 380-387
    • Yi, E.C.1    Li, X.J.2    Cooke, K.3    Lee, H.4    Raught, B.5    Page, A.6    Aneliunas, V.7    Hieter, P.8    Goodlett, D.R.9    Aebersold, R.10
  • 50
    • 0035072715 scopus 로고    scopus 로고
    • A systematic approach to the analysis of protein phosphorylation
    • Zhou, H., Watts, J.D., and Aebersold, R., 2001. A systematic approach to the analysis of protein phosphorylation. Nature Biotechnol, 19:375–378.
    • (2001) Nature Biotechnol , vol.19 , pp. 375-378
    • Zhou, H.1    Watts, J.D.2    Aebersold, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.