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Volumn 276, Issue 1, 2007, Pages 48-54

Xylella fastidiosa genotype differentiation by SYBR® Green-based QRT-PCR

Author keywords

Glassy winged sharpshooter; Homalodisca; Insect vector; Pathogen detection; Pathogen transmission

Indexed keywords

AGRONOMIC TRAIT; ALMOND LEAF SCORCH; ARTICLE; GENOTYPE; MELTING POINT; NONHUMAN; NUCLEOTIDE SEQUENCE; OLEANDER LEAF SCORCH; ORNAMENTAL SPECIES; PATHOTYPE; PHYLOGENY; PIERCE DISEASE; PLANT DISEASE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STRAIN DIFFERENCE; UNITED STATES; XYLELLA FASTIDIOSA;

EID: 35448981870     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2007.00910.x     Document Type: Article
Times cited : (19)

References (27)
  • 1
    • 2142799561 scopus 로고    scopus 로고
    • Biological traits of Xylella fastidiosa strains from grapes and almonds
    • Almeida RP Purcell AH (2003) Biological traits of Xylella fastidiosa strains from grapes and almonds. Appl Environ Microb 69:7447 7452.
    • (2003) Appl Environ Microb , vol.69 , pp. 7447-7452
    • Almeida, R.P.1    Purcell, A.H.2
  • 2
    • 0034928178 scopus 로고    scopus 로고
    • Effect of insect exclusion on the incidence of yellow vine disease and of the associated bacterium in squash
    • Bextine BR, Wayandale A, Bruton BD, Pair SD, Mitchell F Fletcher J (2001) Effect of insect exclusion on the incidence of yellow vine disease and of the associated bacterium in squash. Plant Dis 85:875 878.
    • (2001) Plant Dis , vol.85 , pp. 875-878
    • Bextine, B.R.1    Wayandale, A.2    Bruton, B.D.3    Pair, S.D.4    Mitchell, F.5    Fletcher, J.6
  • 3
    • 0036885073 scopus 로고    scopus 로고
    • An evolutionary perspective of Pierce's Disease of grapevine, citrus variegated chlorosis, and mulberry leaf scorch diseases
    • Chen J, Hartung JS, Chang C Vidaver A (2002) An evolutionary perspective of Pierce's Disease of grapevine, citrus variegated chlorosis, and mulberry leaf scorch diseases. Curr Microbiol 45:423 428.
    • (2002) Curr Microbiol , vol.45 , pp. 423-428
    • Chen, J.1    Hartung, J.S.2    Chang, C.3    Vidaver, A.4
  • 5
    • 34250247622 scopus 로고
    • Axenic culture of the bacteria associated with phony disease of peach and plum leaf scald
    • Davis MJ, French WJ Schaad NW (1981) Axenic culture of the bacteria associated with phony disease of peach and plum leaf scald. Curr Microbiol 6:309 314.
    • (1981) Curr Microbiol , vol.6 , pp. 309-314
    • Davis, M.J.1    French, W.J.2    Schaad, N.W.3
  • 6
    • 28844506754 scopus 로고
    • Prediction of melting profiles and local helix stability for sequenced DNA
    • Gotoh O (1983) Prediction of melting profiles and local helix stability for sequenced DNA. Adv Biophys 16:1 52.
    • (1983) Adv Biophys , vol.16 , pp. 1-52
    • Gotoh, O.1
  • 7
    • 0002051540 scopus 로고    scopus 로고
    • Bioedit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp 41:95 98.
    • (1999) Nucleic Acids Symp , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 9
    • 0029201187 scopus 로고
    • Multiplication and movement of Xylella fastidiosa within grapevine and four other plants
    • Hill BL Purcell AH (1995) Multiplication and movement of Xylella fastidiosa within grapevine and four other plants. Phytopathology 85:1368 1372.
    • (1995) Phytopathology , vol.85 , pp. 1368-1372
    • Hill, B.L.1    Purcell, A.H.2
  • 10
    • 0036216132 scopus 로고    scopus 로고
    • ® Green I reaction mixture for real-time PCR quantification of gene expression
    • ® Green I reaction mixture for real-time PCR quantification of gene expression. Biotechniques 32:790 796.
    • (2002) Biotechniques , vol.32 , pp. 790-796
    • Karsai, A.1    Müller, S.2    Platz, S.3    Hauser, M.4
  • 12
    • 0036107254 scopus 로고    scopus 로고
    • Characterization of biofilm formation by Xylella fastidiosa in vitro
    • Marques LLR, Ceri H, Manfio GP, Reid DM Olson ME (2002) Characterization of biofilm formation by Xylella fastidiosa in vitro. Plant Dis 86:633 638.
    • (2002) Plant Dis , vol.86 , pp. 633-638
    • Marques, L.L.R.1    Ceri, H.2    Manfio, G.P.3    Reid, D.M.4    Olson, M.E.5
  • 13
    • 0035072623 scopus 로고    scopus 로고
    • Phylogenetic relationships of Xylella fastidiosa strains from different hosts, based on 16S rDNA and 16S-23S intergenic spacer sequences
    • Mehta A Rosato Y (2001) Phylogenetic relationships of Xylella fastidiosa strains from different hosts, based on 16S rDNA and 16S-23S intergenic spacer sequences. Int J Syst Evol Micr 51:311 318.
    • (2001) Int J Syst Evol Micr , vol.51 , pp. 311-318
    • Mehta, A.1    Rosato, Y.2
  • 14
    • 0141674856 scopus 로고    scopus 로고
    • Genotypic analysis of Xylella fastidiosa isolates from different hosts using sequences homologous to the Xanthomonas rfp genes
    • Meinhardt LW, Ribeiro M, Coletta-Filho H, Dumenyo C, Tsai SM Bellato C (2003) Genotypic analysis of Xylella fastidiosa isolates from different hosts using sequences homologous to the Xanthomonas rfp genes. Mol Plant Pathol 4:327 335.
    • (2003) Mol Plant Pathol , vol.4 , pp. 327-335
    • Meinhardt, L.W.1    Ribeiro, M.2    Coletta-Filho, H.3    Dumenyo, C.4    Tsai, S.M.5    Bellato, C.6
  • 15
    • 0038666509 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping using allele-specific PCR and fluorescence melting curves
    • Papp AC, Pinsonneault JK, Cooke G Sadée W (2003) Single nucleotide polymorphism genotyping using allele-specific PCR and fluorescence melting curves. Biotechniques 34:1068 1072.
    • (2003) Biotechniques , vol.34 , pp. 1068-1072
    • Papp, A.C.1    Pinsonneault, J.K.2    Cooke, G.3    Sadée, W.4
  • 16
    • 0016266885 scopus 로고
    • Recursion relation generation of probability profiles for specific-sequence macromolecules with long-range correlations
    • Poland D (1974) Recursion relation generation of probability profiles for specific-sequence macromolecules with long-range correlations. Biopolymers 13:1859 1871.
    • (1974) Biopolymers , vol.13 , pp. 1859-1871
    • Poland, D.1
  • 17
    • 0029014694 scopus 로고
    • Genetic relationships among strains of Xylella fastidiosa from RAPD-PCR data
    • Pooler MR Hartung JS (1995) Genetic relationships among strains of Xylella fastidiosa from RAPD-PCR data. Curr Microbiol 31:134 137.
    • (1995) Curr Microbiol , vol.31 , pp. 134-137
    • Pooler, M.R.1    Hartung, J.S.2
  • 18
    • 0002410321 scopus 로고    scopus 로고
    • Xylella fastidiosa, a regional problem or global threat?
    • Purcell AH (1997) Xylella fastidiosa, a regional problem or global threat? J Plant Pathol 79:99 105.
    • (1997) J Plant Pathol , vol.79 , pp. 99-105
    • Purcell, A.H.1
  • 20
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
    • Ririe KM, Rasmussen R Wittwer C (1997) Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal Biochem 245:154 160.
    • (1997) Anal Biochem , vol.245 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.2    Wittwer, C.3
  • 21
    • 0038154070 scopus 로고    scopus 로고
    • Detection and diversity assessment of Xylella fastidiosa in field-collected plant and insect samples by using 16S rRNA and gyrB sequences
    • Rodrigues JLM, Silva-Stenico ME, Gomes JE, Lopes JRS Tsai SM (2003) Detection and diversity assessment of Xylella fastidiosa in field-collected plant and insect samples by using 16S rRNA and gyrB sequences. Appl Environ Microb 69:4249 4255.
    • (2003) Appl Environ Microb , vol.69 , pp. 4249-4255
    • Rodrigues, J.L.M.1    Silva-Stenico, M.E.2    Gomes, J.E.3    Lopes, J.R.S.4    Tsai, S.M.5
  • 22
    • 2642569160 scopus 로고    scopus 로고
    • Xylella fastidiosa subspecies: X. fastidiosa subsp piercei, subsp. nov., X. fastidiosa subsp. multiplex subsp. nov., and X. fastidiosa subsp. pauca subsp. nov
    • Schaad N, Postnikova E, Lacy G, Fatmi M Chang C (2004) Xylella fastidiosa subspecies: X. fastidiosa subsp piercei, subsp. nov., X. fastidiosa subsp. multiplex subsp. nov., and X. fastidiosa subsp. pauca subsp. nov. Syst Appl Microbiol 27:290 300.
    • (2004) Syst Appl Microbiol , vol.27 , pp. 290-300
    • Schaad, N.1    Postnikova, E.2    Lacy, G.3    Fatmi, M.4    Chang, C.5
  • 23
    • 0027981314 scopus 로고
    • Thermal denaturation of double-stranded nucleic acids: Prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction
    • Steger G (1994) Thermal denaturation of double-stranded nucleic acids: prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction. Nucleic Acids Res 22:2760 2768.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2760-2768
    • Steger, G.1
  • 24
    • 35448961576 scopus 로고
    • Effect of elevated temperatures on DNA and some polynucleotides: Denaturation, renaturation and cleavage of glycosidic and phosphate ester bonds
    • Rose, A.H., ed), pp. Academic Press, London.
    • Szybalski W (1967) Effect of elevated temperatures on DNA and some polynucleotides: denaturation, renaturation and cleavage of glycosidic and phosphate ester bonds. Thermobiology (Rose AH, ed), pp. 73 121. Academic Press, London.
    • (1967) Thermobiology , pp. 73-121
    • Szybalski, W.1
  • 25
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876 4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 26
    • 0037310805 scopus 로고    scopus 로고
    • Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
    • Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB et al 2003) Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa. J Bacteriol 185:1018 1026.
    • (2003) J Bacteriol , vol.185 , pp. 1018-1026
    • Van Sluys, M.A.1    De Oliveira, M.C.2    Monteiro-Vitorello, C.B.3
  • 27
    • 0028948030 scopus 로고
    • PCR Amplification and direct sequencing of gyrB genes with universal primers and their application of the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto S Harayama S (1995) PCR Amplification and direct sequencing of gyrB genes with universal primers and their application of the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61:1104 1109.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.