Expression in multigene families. Analysis of chloroplast and mitochondrial proteases

Plant Physiology

Volumn 135, Issue 3, 2004, Pages 1336-1345

  Sinvany Villalobo, Galit ^a   Davydov, Olga ^b   Ben Ari, Giora ^a   Zaltsman, Adi ^a   Raskind, Alexander ^a   Adam, Zach ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINETRIPHOSPHATE; ENZYMES; GENES; ISOMERS;

CHLOROPLAST; MUTANT PHENOTYPES;

PLANTS (BOTANY);

ARABIDOPSIS; EMBRYOPHYTA;

EID: 3543046184     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.104.043299     Document Type: Article

References (44)

1. Adam Z (2000) Chloroplast proteases: Possible regulators of gene expression? Biochimie 82: 647-654
2. Adam Z, Adamska I, Nakabayashi K, Ostersetzer O, Haussuhl K, Manuell A, Vallon O, Rodermel SR, Shinozaki K, Clarke AK (2001) Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. Plant Physiol 125: 1912-1918
3. Adam Z, Clarke AK (2002) Cutting edge of chloroplast proteolysis. Trends Plant Sci 7: 451-456
4. Aronsson H, Jarvis P (2002) A simple method for isolating importcompetent Arabidopsis chloroplasts. FEBS Lett 529: 215-220
5. Bailey S, Thompson E, Nixon PJ, Horton P, Mullineaux CW, Robinson C, Mann NH (2002) A critical role for the Var2 FtsH homologue of Arabidopsis thaliana in the photosystem II repair cycle in vivo. J Biol Chem 277: 2006-2011
6. Chen M, Choi Y, Voytas DF, Rodermel S (2000) Mutations in the Arabidopsis VAR2 locus cause leaf variegation due to the loss of a chloroplast FtsH protease. Plant J 22: 303-313
7. Clarke AK (1999) ATP-dependent Clp proteases in photosynthetic organisms: A cut above the rest! Ann Bot 83: 593-599
8. Ferl GZ, Timmerman JM, Witte ON (2003) Extending the utility of gene profiling data by bridging microarray platforms. Proc Natl Acad Sci USA 100: 10585-10587
9. Fling SP, Gregerson DS (1986) Peptide and protein molecular weight determination by electrophoresis using a high-molarity tris buffer system without urea. Anal Biochem 155: 83-88
10. Gorg A, Postel W, Domscheit A, Gunther S (1988) Two-dimensional electrophoresis with immobilized pH gradients of leaf proteins from barley (Hordeum vulgare): method, reproducibility and genetic aspects. Electrophoresis 9: 681-692
11. Gottesman S (1996) Proteases and their targets in Escherichia coli. Annu Rev Genet 30: 465-506
12. Guterman I, Shalit M, Menda N, Piestun D, Dafny-Yelin M, Shalev G, Davydov O, Ovadis M, Emanuel M, Wang J, et al (2002) Rose scent: genomic approach to discover novel floral fragrance-related genes. Plant Cell 14: 2325-2338
13. Halperin T, Adam Z (1996) Degradation of mistargeted OEE33 in the chloroplast stroma. Plant Mol Biol 30: 925-933
14. Halperin T, Ostersetzer O, Adam Z (2001a) ATP-dependent association between subunits of Clp protease in pea chloroplasts. Planta 213: 614-619
15. Halperin T, Zheng B, Itzhaki H, Clarke AK, Adam Z (2001b) Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease. Plant Mol Biol 45:461-468
16. Haussuhl K, Andersson B, Adamska I (2001) A chloroplast DegP2 protease performs the primary cleavage of the photodamaged D1 protein in plant photosystem II. EMBO J 20: 713-722
17. Itzhaki H, Naveh L, Lindahl M, Cook M, Adam Z (1998) Identification and characterization of DegP, a serine protease associated with the luminal side of the thylakoid membrane. J Biol Chem 273: 7094-7098
18. Kolodziejczak M, Kolaczkowska A, Szczesny B, Urantowka A, Knorpp C, Kieleczawa J, Janska H (2002) A higher plant mitochondrial homologue of the yeast m-AAA protease. Molecular cloning, localization, and putative function. J Biol Chem 277: 43792-43798
19. Kuroda H, Maliga P (2003) The plastid clpP1 protease gene is essential for plant development. Nature 425: 86-89
20. Lindahl M, Spetea C, Hundal T, Oppenheim AB, Adam Z, Andersson B (2000) The thylakoid FtsH protease plays a role in the light-induced turnover of the photosystem II D1 protein. Plant Cell 12: 419-431
21. Lindahl M, Tabak S, Cseke L, Pichersky E, Andersson B, Adam Z (1996) Identification, characterization, and molecular cloning of a homologue of the bacterial FtsH protease in chloroplasts of higher plants. J Biol Chem 271: 29329-29334
22. 6f complex. Plant Cell 12: 137-149
23. Millar AH, Sweetlove LJ, Giege P, Leaver CJ (2001) Analysis of the Arabidopsis mitochondrial proteome. Plant Physiol 127: 1711-1727
24. Nakabayashi K, Ito M, Kiosue T, Shinozaki K, Watanabe A (1999) Identification of clp genes expressed in senescing Arabidopsis leaves. Plant Cell Physiol 40: 504-514
25. Ostersetzer O, Adam Z (1997) Light-stimulated degradation of an unassembled Rieske FeS protein by a thylakoid-bound protease: the possible role of the FtsH protease. Plant Cell 9: 957-996
26. Peltier J-B, Ytterberg J, Liberles DA, Roepstorff P, van Wijk KJ (2001) Identification of a 350 kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana. J Biol Chem 276: 16318-16327
27. Peltier J-B, Emanuelsson O, Kalume DE, Ytterberg J, Friso G, Rudella A, Libertes DA, Soderberg L, Roepstorff P, von Heijne G, et al (2002) Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Plant Cell 14: 211-236
28. Peltier JB, Ripoll DR, Friso G, Rudella A, Cai Y, Ytterberg J, Giacomelli L, Pillardy J, Van Wijk KJ (2004) Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted 3-D structures and functional implications. J Biol Chem 279: 4768-4781
29. Sakamoto W (2003) Leaf-variegated mutations and their responsible genes in Arabidopsis thaliana. Genes Genet Syst 78: 1-9
30. Sakamoto W, Tamura T, Hanba-Tomita Y, Sodmergen, Murata M (2002) The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles. Genes Cells 7: 769-780
31. Sakamoto W, Zaltsman A, Adam Z, Takahashi Y (2003) Coordinated regulation and complex formation of YELLOW VARIEGATED1 and YELLOW VARIEGATED2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes. Plant Cell 15: 2843-2855
32. Sarria R, Lyznik A, Vallejos CE, Mackenzie SA (1998) A cytoplasmic male sterility-associated mitochondrial peptide in common bean is post-translationally regulated. Plant Cell 10:1217-1228
33. Schubert M, Petersson UA, Haas BJ, Funk C, Schroder WP, Kieselbach T (2002) Proteome map of the chloroplast lumen of Arabidopsis thaliana. J Biol Chem 277: 8354-8365
34. Schuchhardt J, Beule D, Malik A, Wolski E, Eickhoff H, Lehrach H, Herzel H (2000) Normalization strategies for cDNA microarrays. Nucleic Acids Res 28: e47
35. Silva P, Thompson E, Bailey S, Kruse O, Mullineaux CW, Robinson C, Mann NH, Nixon PJ (2003) FtsH is involved in the early stages of repair of photosystem II in Synechocystis sp. PCC 6803. Plant Cell 15: 2152-2164
36. Skorko-Glonek J, Lipinska B, Krzewski K, Zolese G, Bertoli E, Tanfani F (1997) HtrA heat shock protease interacts with phospholipid membranes and undergoes conformational changes. J Biol Chem 272: 8974-8982
37. Sokolenko A, Lerbs-Mache S, Altschmied L, Herrmann RG (1998) Clp protease complexes and their diversity in chloroplasts. Planta 207: 286-295
38. Sokolenko A, Pojidaeva E, Zinchenko V, Panichkin V, Glaser VM, Herrmann RG, Shestakov SV (2002) The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts. Curr Genet 41: 291-310
39. Takechi K, Sodmergen, Murata M, Motoyoshi F, Sakamoto W (2000) The YELLOW VARIEGATED (VAR2) locus encodes a homologue of FtsH, an ATP-dependent protease in Arabidopsis. Plant Cell Physiol 41: 1334-1346
40. Wickner S, Maurizi MR, Gottesman S (1999) Posttranslational quality control: folding, refolding, and degrading proteins. Science 286: 1888-1893
41. Van JX, Wait R, Berkelman T, Harry RA, Westbrook JA, Wheeler CH, Dunn MJ (2000) A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Electrophoresis 21: 3666-3672
42. Yates JR (1998) Mass spectrometry and the age of the proteome. J Mass Spectrom 33: 1-19
43. Yu F, Park S, Rodermel SR (2004) The Arabidopsis FtsH metalloprotease gene family: interchangeability of subunits in chloroplast oligomeric complexes. Plant J 37: 864-876
44. Zheng B, Halperin T, Hruskova-Heidingsfeldova O, Adam Z, Clarke AK (2002) Characterization of chloroplast Clp proteins in Arabidopsis: localization, tissue specificity and stress responses. Physiol Plant 114: 92-101