Leaf-variegated mutations and their responsible genes in Arabidopsis thaliana

Genes and Genetic Systems

Volumn 78, Issue 1, 2003, Pages 1-9

  Sakamoto, Wataru ^a  

^a OKAYAMA UNIVERSITY   (Japan)

Author keywords

Arabidopsis thaliana; Leaf variegation; Organelle; Plastid

Indexed keywords

ARABIDOPSIS; CELL ORGANELLE; CHLOROPLAST; GENE LOCUS; GENE MUTATION; GENETIC MARKER; GENETIC TRAIT; INHERITANCE; LEAF MORPHOLOGY; MITOCHONDRION; MOLECULAR CLONING; NONHUMAN; PLANT GENETICS; PLANT LEAF; PLASTID; REVIEW;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; ATP-DEPENDENT PROTEASES; MEMBRANE PROTEINS; MUTATION; PIGMENTATION; PLANT LEAVES;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0037302244     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.78.1     Document Type: Review

References (72)

1. Adam, Z. (2000) Chloroplast proteases: possible regulators of gene expression? Biochimie 82, 647-654.
2. Adam, Z., Adamska, I., Nakabayashi, K., Ostersetzer, O., Haussuhl, K., Manuell, A., Zheng, B., Vallon, O., Rodermel, S. R., Shinozaki, K., and Clarke, A. K. (2001) Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. Plant Physiol. 125, 1912-1918.
3. Ahokas, H. (1976) Two segregating cytoplasmic mutants of barley. Hereditas 82, 187-192.
4. Akiyama, Y., and Ito, K. (2000) Roles of multimerization and membrane association in the proteolytic functions of FtsH (HflB). EMBO J. 15, 3888-3895.
5. Akiyama, Y., Yoshihisa, T., and Ito, K. (1995) FtsH, a membrane-bound ATPase, forms a complex in the cytoplasmic membrane of Escherichia coli. J. Biol. Chem. 270, 23485-23490.
6. Aluru, M.R., Bae, H., Wu, D., and Rodermel, S. R. (2001) The Arabidopsis immutans mutation affects plastid differentiation and the morphogenesis of white and green sectors in variegated plants. Plant Physiol. 127, 67-77.
7. Arlt, H., Tauer, R., Feldmann, H., Neupert, W., and Langer, T. (1996) The YTA10-12 complex, an AAA protease with chaperon-like activity in the inner membrane of mitochondria. Cell 85, 875-885.
8. Bailey, S., Thompson, E., Nixon, P. J., Horton, P., Mullineauz, C. W., Robinson, C., and Mann, N. H. (2002) A critical role for the Var2 FtsH homologue of Arabidopsis thaliana in the Photosystem II repair cycle in vivo. J. Biol. Chem. 277, 2006-2011.
9. Berthold, D. A., Andersson, M. E., and Nordlund, P. (2000) New insight into the structure and function of the alternative oxidase. Biochim. Biophys. Acta 1460, 241-254.
10. Bochtler, M., Hartmann, C., Song, H. K., Bourenkov, G. P., Bartunik, H. D., and Huber, R. (2000) The structures of HslU and the ATP-dependent protease HslU-HslV. Nature 403, 800-805.
11. Burk, L. G., Stewart, R. N., and Dermen, H. (1964) Histogenesis and genetics of a plastid controlled chlorophyll variegation in tobacco. Amer. J. Bot. 51, 713-724.
12. Carol, P., and Kuntz, M. (2001) A plastid terminal oxidase comes to lights: implications for carotenoid biosynthesis and chlororespiration. Trends Plant Sci. 6, 31-36.
13. Carol, P., Stevenson, D., Bisanz, C., Breitenbach, J., Sandmann, G., Mache, R., Coupland, G., and Kuntz, M. (1999) Mutations in the Arabidopsis gene IMMUTANS cause a variegated phenotype by inactivating a chloroplast terminal oxidase associated with phytoene desaturation. Plant Cell 11, 57-68.
14. Chatterjee, M., Sparvoil, S., Edmunds, C., Garosi, P., Findlay, K., and Martin, C. (1996) DAG, a gene required for chloroplast and palisade development in Antirrhinum majus. EMBO J. 15, 4194-4207.
15. Chen, M., Jensen, M., and Rodermel, S. (1999) The yellow variegated mutant of Arabidopsis is plastid autonomous and delayed in chloroplast biogenesis. J. Hered. 90, 207-214.
16. Chen, M., Choi, Y. D., Voytas, D., and Rodermel, S. (2000) Mutations in the Arabidopsis VAR2 locus cause leaf variegation due to the loss of a chloroplastic FtsH protease. Plant J. 22, 303-313.
17. Chi, N. W., and Kolodner, R. D. (1994a) Purification and characterization of MSH1, a yeast mitochondrial protein that binds to DNA mismatches. J. Biol. Chem. 269, 29984-29992.
18. Chi, N. W., and Kolodner, R. D. (1994b) The effect of DNA mismatches on the ATPase activity of MSH1, a protein in yeast mitochondria that recognizes DNA mismatches. J. Biol. Chem. 269, 29993-29997.
19. Correns, C. (1909) Vererbungsversuche mit blass(gelb)grünen und buntblättrigen Sippen bei Mirabilis jalapa, Urtica pilulifera und Lunaria annua. Z. Indukt Abstammungs-Vererbungsl 1, 291-329.
20. Epp, M. (1973) Nuclear gene-induced plastome mutations in Oenothera hookeri. I. Genetic analysis. Genetics 75, 465-483.
21. Grevelding, C., Suter-Crazzolara, C., von Menges, A., Kemper, E., Masterson, R., Schell, J., and Reiss, B. (1996) Characterization of a new allele of pale cress and its role in greening in Arabidopsis. Mol. Gen. Genet. 251, 532-541.
22. Han, C.-D., Coe, E. H., Jr., and Martienssen, R. A. (1992) Molecular cloning: and characterization of iojap (ij), a pattern striping gene of maize. EMBO J. 11, 4037-4046.
23. Hugueney, P., Bouvier, F., Badillo, A., d'Harlingue, A., Kuntz, M., and Camara, B. (1995) Identification of a plastid protein involved in vesicle fusion and/or membrane protein translocation. Proc. Natl. Acad. Sci. USA 92, 4532-4536.
24. Imai, Y. (1928) A consideration of variegation. Genetics 13, 544-562.
25. Jenkins, M. T. (1924) Heritable characters of maize. XX. iojapstriping, a chlorophyll defect. J. Hered. 15, 467-472.
26. Josse, E. M., Simkin, A. J., gaffe, J., Laoure, A. M., Kuntz, M., and Carol, P. (2000) A plastid terminal oxidase associated with carotenoid desaturation during chromoplast differentiation. Plant Physiol. 123, 1427-1436.
27. Keddie, J. S., Carroll, B., Jones, J. D., and Gruissem, W. (1996) The DCL gene of tomato is required for chloroplast development and palisade cell morphogenesis in leaves. EMBO J. 15, 4208-4217.
28. Klein, M., Ecker-Ossenkopp, U., Schmiedeberg, I., Brandt, P., Unseld, M., Brennicke, A., and Schuster, W. (1994) Physical mapping of the mitochondrial genome of Arabidoposis thaliana by cosmid and YAC clones. Plant J. 6, 447-455.
29. Kolodner, R. D., and Marsischky, G. T. (1999) Eukaryotic DNA mismatch repair. Curr. Opin. Genet. Dev. 9, 89-96.
30. Langer, T. (2000) Trends Biochem. Sci. 25, 247-251.
31. Li, H., Culligan, K., Dixon, R.A., and Chory, J. (1995) CUE1: a mesophyll cell-specific positive regulator of light-controlled gene expression in Arabidopsis. Plant Cell 7, 1599-1600.
32. Leon, P., Arroyo, A., and Mackenzie, S. (1998) Nuclear control of plastid and mitochondrial development in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 453-480.
33. Lindahl, M., Tabak, S., Cseke, L., Pichersky, E., Andersson, B., and Adam, Z. (1996) Identification, characterization, and molecular cloning of a homologue of the bacterial FtsH protease in chloroplasts of higher plants. J. Biol. Chem. 271, 29329-29334.
34. Lindahl, M., Spetea, C., Hundal, T., Oppenheim, A. B., Adam, Z., and Andersson, B. (2000) The thylakoid FtsH protease plays a role in the light-induced turnover of the photosystem II D1 protein. Plant Cell 12, 419-431.
35. López-Juez, E., Jarvis, R. P., Takeuchi, A., Page, A. M., and Chory, J. (1998) New Arabidopsis cue mutants suggest a close connection between plastid- and phytochrome regulation of nuclear gene expression. Plant Physiol. 118, 803-815.
36. Mackenzie, S., and McIntosh, L. (1999) Higher plant mitochondria. Plant Cell 11, 571-585.
37. Martínez-Zapater, J. M. (1993) Genetic analysis of variegated mutants in Arabidopsis. J. Hered. 84, 138-140.
38. Martínez-Zapater, J. M., Gil, P., Capel, J., and Somerville, C. R. (1992) Mutations at the Arabidopsis CHM locus promote rearrangements of the mitochondrial genome. Plant Cell 4, 889-899.
39. Mattoo, A. K., Hoffman-Falk, H., Marder, J. B., and Edelman, M. (1984) Regulation of protein metabolism: coupling of photosynthetic electron transport to in vivo degradation of the rapidly metabolized 32-kilodalton protein of the chloroplast membranes. Proc. Natl. Acad. Sci. USA 81, 1380-1384.
40. Maxwell, D. P., Wang, Y., and McIntosh, L. (1999) The alternative oxidase lowers mitochondrial reactive oxygen production in plant cells. Proc. Natl. Acad, Sci. USA 96, 8271-8276.
41. Melis, A. (1999) Photosystem-II damage and repair cycle in chloroplasts: what modulates the rate of photodamage in vivo? Trends Plant Sci. 4, 130-134.
42. Mourad, G. S., and White, J. A. (1992) The isolation of apparently homoplastidic mutants induced by a nuclear recessive gene in Arabidopsis thaliana. Theor. Appl. Genet. 84, 906-914.
43. Newton, K. J., and Coe, E. H., Jr. (1986) Mitochondrial DNA changes in abnormal growth mutants of maize. Proc. Natl. Acad. Sci. USA 83, 7363-7366.
44. Niyogi, K. K. (1999) Photoprotection revisited: genetic and molecular approaches. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50, 333-359.
45. + superfamily ATPases: common structure-diverse function. Genes To Cells 6, 575-597.
46. Ostersetzer, O., and Adam, Z. (1997) Light-stimulated degradation of a unassembled Rieske FeS protein by a thylakoidbound protease: the possible role of the FtsH protease. Plant Cell 9, 957-965.
47. Patel, S., and Latterich, M. (1998) The AAA team: related ATPases with diverse functions. Trends Cell Biol. 8, 65-71.
48. Rédei, G. P. (1963) Somatic instability caused by a cysteine-sensitive gene in Arabidopsis. Science 139, 767-769.
49. Rédei, G. P. (1967) Biochemical aspects of a generically determined variegation in Arabidopsis. Genetics 56, 431-443.
50. Rédei, G. P., and Plurad, S. B. (1973) Hereditary structural alterations of plastids induced by a nuclear mutator gene in Arabidopsis. Protoplasma 77, 361-380.
51. Reenan, R. A., and Kolodner, R. D. (1992a) Isolation and characterization of the Saccharomyces cerevisiae genes encoding homologs of HexA and MutS mismatch repair proteins. genetics 132, 963-973.
52. Reenan, R. A., and Kolodner, R. D. (1992b) Characterization of insertion mutations in the Saccharomyces cerevisiae MSH1 and MSH2 genes: evidence for mitochondrial and nuclear functions. genetics 132, 975-985.
53. Reiter, R. S., Coomber, S. A., Bourett, T. M., Bartley, G. E., Scolnik, P. A. (1994) Control of leaf and chloroplast development by the Arabidopsis gene pale cress. Plant Cell 6, 1253-1264.
54. Rhoades, M. M. (1943) Genic induction of an inherited cytoplasmic difference. Proc. Natl. Acad. Sci. USA 29, 327-329.
55. Robertson, D. W. (1967) Linkage studies of various barley mutations (Hordeum species). Crop Sci. 7, 41-42.
56. Rochaix, J.-D. (1996) Post-transcriptional regulation of chloroplast gene expression in Chlamydomonas reinhardtii. Plant Mol. Biol. 32, 327-341.
57. Sakamoto, W., Kondo, H., Murata, M., and Motoyoshi, F. (1996) Altered mitochondrial gene expression in a maternal distorted leaf mutant of Arabidopsis induced by chloroplast mutator. Plant Cell 8, 1377-1390.
58. Sakamoto, W., Tamura, T., Hanba-Tomita, Y., Sodmergen, and Murata, M. (2002) The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles. Genes To Cells 7, 769-780.
59. Seo, S., Okamoto, M., Iwai, T., Iwano, M., Fukui, K., Isogai, A., Nakajima, N., and Ohashi, Y. (2000) Reduced levels of chloroplast FtsH protein in tobacco mosaic virus-infected tobacco leaves accelerate the hypersentsitive reaction. Plant Cell 12, 917-932.
60. Shumway, L. K., and Weier, T. E. (1967) The chloroplast structure of iojap maize. Amer. J. Bot. 54, 773-780.
61. Sokolenko, A., Pojidaeva, E., Zinchenko, V., Panichkin, V., Glaser, V. M., Herrmann, R. G., and Shestakov, S. V. (2002) The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts. Curr. Genet. 41, 291-310.
62. Somerville, C. R. (1986) Analysis of photosynthesis with mutants of higher plants and algae. Annu. Rev. Plant Physiol. 37, 467-507.
63. Sousa, M. C., Trame, C. B., Tsuruta, H., Wilbanks, S. M., Reddy, V. S., and McKay, D. B. (2000) Crystal and solution structures of an HslUV protease-chaperone complex. Cell 103, 633-643.
64. Streatfield, S. J., Weber, A., Kinsman, E. A., Häusler, R. E., Li, J., Post-Beittenmiller, D., Kaiser, W. M., Pyke, K. A., Flügge, U.-I., and Chory, J. (1999) The phosphoenolpyruvate/phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-development nuclear gene expression. Plant Cell 11, 1609-1621.
65. Stoike, L. L., and Sears, B. B. (1998) Plastome mutator-induced alterations arise in Oenothera chloroplast DNA through template slippage. Genetics 149, 347-353.
66. Takechi K, Sodmergen, Murata M, Motoyoshi F., and Sakamoto W. (2000) The YELLOW VARIEGATED (VAR2) locus encodes a homologue of FtsH, an ATP-dependent protease in Arabidopsis. Plant Cell Physiol. 41, 1334-1346.
67. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
68. Unseld, M., Marienfeld, J. R., Brandt, P., and Brennicke, A. (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15, 57-61.
69. Vanlerberghe, G. C., and McIntosh, L. (1997) Alternative oxidase: From gene to function. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 703-734.
70. Wetzel, C. M., Jiang, C.-Z., Meehan, L. J., Voytas, D. F., and Rodermel, S. R. (1994) Nuclear-organelle interactions: The immutans variegation mutant of Arabidopsis is plastid autonomous and impaired in carotenoid biosynthesis. Plant J. 6, 161-175.
71. Wetzel, C. M., and Rodermel, S. (1998) Regulation of phytoene desaturase expression is independent of leaf pigment content in Arabidopsis thaliana. Plant Mol. Biol. 37, 1045-1053.
72. Wu, D., Wright, D. A., Wetzel, C., Voytas, D. F., and Rodermel, S. (1999) The IMMUTANS variegation locus of Arabidopsis defines a mitochondrial alternative oxidase homolog that functions during early chloroplast biogenesis. Plant Cell 11, 43-55.