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Volumn 24, Issue 10, 2007, Pages 2213-2221

Relative rates of evolution in the coding and control regions of African mtDNAs

Author keywords

Mitochondrial DNA; Molecular clock; Molecular evolution; Phylogenetic analysis; Selection

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME RNA; TRANSFER RNA;

EID: 35348884257     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msm147     Document Type: Article
Times cited : (33)

References (46)
  • 3
    • 33748048774 scopus 로고    scopus 로고
    • Spatial covariation and nonsynonymous substitution rates in vertebrate mitochondrial genomes
    • Broughton RE, Reneau PC. 2006. Spatial covariation and nonsynonymous substitution rates in vertebrate mitochondrial genomes. Mol Biol Evol. 23:1516-1524.
    • (2006) Mol Biol Evol , vol.23 , pp. 1516-1524
    • Broughton, R.E.1    Reneau, P.C.2
  • 4
    • 0023163377 scopus 로고
    • Mitochondrial DNA and human evolution
    • Cann R, Stoneking M, Wilson AC. 1987. Mitochondrial DNA and human evolution. Nature. 325:31-36.
    • (1987) Nature , vol.325 , pp. 31-36
    • Cann, R.1    Stoneking, M.2    Wilson, A.C.3
  • 5
    • 0842285683 scopus 로고    scopus 로고
    • Comparative genomics and the evolution of human mitochondrial DNA: Assessing the effects of selection
    • Elson JL, Turnbull DM, Howell N. 2004. Comparative genomics and the evolution of human mitochondrial DNA: assessing the effects of selection. Am J Hum Genet. 74:229-238.
    • (2004) Am J Hum Genet , vol.74 , pp. 229-238
    • Elson, J.L.1    Turnbull, D.M.2    Howell, N.3
  • 6
    • 0032873641 scopus 로고    scopus 로고
    • Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees
    • Excoffier L, Yang Z. 1999. Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees. Mol Biol Evol. 16:1357-1368.
    • (1999) Mol Biol Evol , vol.16 , pp. 1357-1368
    • Excoffier, L.1    Yang, Z.2
  • 11
    • 18344366125 scopus 로고    scopus 로고
    • Herrnstadt C, Elson JL, Fahy E, et al. (11 co-authors). 2002. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups. Am J Hum Genet. 70:1152-1171.
    • Herrnstadt C, Elson JL, Fahy E, et al. (11 co-authors). 2002. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups. Am J Hum Genet. 70:1152-1171.
  • 12
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic over-estimation of recent divergence times
    • Ho SYW, Phillips MJ, Cooper A, Drummond AJ. 2005. Time dependency of molecular rate estimates and systematic over-estimation of recent divergence times. Mol Biol Evol. 22:1561-1568.
    • (2005) Mol Biol Evol , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 13
    • 0033911276 scopus 로고    scopus 로고
    • Persistent heteroplasmy of a mutation in the human mtDNA control region. Hypermutation as an apparent consequence of simple repeat expansion/contraction
    • Howell N, Bogolin Smejkal C. 2000. Persistent heteroplasmy of a mutation in the human mtDNA control region. Hypermutation as an apparent consequence of simple repeat expansion/contraction. Am J Hum Genet. 66:1589-1598.
    • (2000) Am J Hum Genet , vol.66 , pp. 1589-1598
    • Howell, N.1    Bogolin Smejkal, C.2
  • 14
    • 0037372985 scopus 로고    scopus 로고
    • The pedigree rate of sequence divergence in the human mitochondrial genome: There is a difference between phylogenetic and pedigree rates
    • Howell N, Bogolin Smejkal C, Mackey DA, Chinnery PF, Turnbull DM, Herrnstadt C. 2003. The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylogenetic and pedigree rates. Am J Hum Genet. 72:659-670.
    • (2003) Am J Hum Genet , vol.72 , pp. 659-670
    • Howell, N.1    Bogolin Smejkal, C.2    Mackey, D.A.3    Chinnery, P.F.4    Turnbull, D.M.5    Herrnstadt, C.6
  • 15
    • 4944257680 scopus 로고    scopus 로고
    • African haplogroup L mtDNA sequences show violations of clock-like evolution
    • Howell N, Elson JL, Turnbull DM, Herrnstadt C. 2004. African haplogroup L mtDNA sequences show violations of clock-like evolution. Mol Biol Evol. 21:1843-1854.
    • (2004) Mol Biol Evol , vol.21 , pp. 1843-1854
    • Howell, N.1    Elson, J.L.2    Turnbull, D.M.3    Herrnstadt, C.4
  • 16
    • 0035252561 scopus 로고    scopus 로고
    • Evidence for purifying selection acting on silent sites in BRCA1
    • Hurst LD, Pal C. 2001. Evidence for purifying selection acting on silent sites in BRCA1. Trends Genet. 17:62-65.
    • (2001) Trends Genet , vol.17 , pp. 62-65
    • Hurst, L.D.1    Pal, C.2
  • 17
    • 0034619822 scopus 로고    scopus 로고
    • Mitochondrial genetic variation and the origin of modern humans
    • Ingman M, Kaesmann H, Pääbo S, Gyllensten U. 2000. Mitochondrial genetic variation and the origin of modern humans. Nature. 408:708-712.
    • (2000) Nature , vol.408 , pp. 708-712
    • Ingman, M.1    Kaesmann, H.2    Pääbo, S.3    Gyllensten, U.4
  • 18
    • 34247566505 scopus 로고    scopus 로고
    • The effect of model choice on phylogenetic inference using mitochondrial sequence data: Lessons from the scorpions
    • Jones M, Gantenbein B, Fet V, Blaxter M. 2007. The effect of model choice on phylogenetic inference using mitochondrial sequence data: lessons from the scorpions. Mol Phylogenet Evol. 43:583-595.
    • (2007) Mol Phylogenet Evol , vol.43 , pp. 583-595
    • Jones, M.1    Gantenbein, B.2    Fet, V.3    Blaxter, M.4
  • 19
    • 33749648812 scopus 로고    scopus 로고
    • Kayser M, Brauer S, Cordaux R, et al. (15 co-authors). 2006. Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific. Mol Biol Evol. 23:2234-2244.
    • Kayser M, Brauer S, Cordaux R, et al. (15 co-authors). 2006. Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific. Mol Biol Evol. 23:2234-2244.
  • 20
    • 33244457956 scopus 로고    scopus 로고
    • Kivisild T, Shen P, Wall DP, et al. (17 co-authors). 2006. The role of selection in the evolution of human mitochondrial genomes. Genetics. 172:373-387.
    • Kivisild T, Shen P, Wall DP, et al. (17 co-authors). 2006. The role of selection in the evolution of human mitochondrial genomes. Genetics. 172:373-387.
  • 21
    • 0002538268 scopus 로고
    • Sequence evolution of mitochondrial DNA in humans and chimpanzees
    • Osawa S, Honjo T, editors, Tokyo: Springer. p
    • Kocher TD, Wilson AC. 1991. Sequence evolution of mitochondrial DNA in humans and chimpanzees. In: Osawa S, Honjo T, editors. Evolution of life: Fossils, molecules and culture. Tokyo: Springer. p. 391-413.
    • (1991) Evolution of life: Fossils, molecules and culture , pp. 391-413
    • Kocher, T.D.1    Wilson, A.C.2
  • 22
    • 27844569825 scopus 로고    scopus 로고
    • Site-to-site variation of synonymous substitution rates
    • Kosakovsky Pond S, Muse SV. 2005. Site-to-site variation of synonymous substitution rates. Mol Biol Evol. 22:2375-2385.
    • (2005) Mol Biol Evol , vol.22 , pp. 2375-2385
    • Kosakovsky Pond, S.1    Muse, S.V.2
  • 23
    • 33646755364 scopus 로고    scopus 로고
    • Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA
    • Loewe L. 2006. Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA. Genet Res. 87:133-159.
    • (2006) Genet Res , vol.87 , pp. 133-159
    • Loewe, L.1
  • 24
    • 4444285495 scopus 로고    scopus 로고
    • Mutagenesis by transient misalignment in the human mitochondrial DNA control region
    • Malyarchuk BA, Rogozin IB. 2004. Mutagenesis by transient misalignment in the human mitochondrial DNA control region. Ann Hum Genet. 68:324-339.
    • (2004) Ann Hum Genet , vol.68 , pp. 324-339
    • Malyarchuk, B.A.1    Rogozin, I.B.2
  • 25
    • 34249062487 scopus 로고    scopus 로고
    • Positive and negative selection on the mitochondrial genome
    • Meiklejohn CD, Montooth KL, Rand DM. 2007. Positive and negative selection on the mitochondrial genome. Trends Ecol Evol. 23:259-263.
    • (2007) Trends Ecol Evol , vol.23 , pp. 259-263
    • Meiklejohn, C.D.1    Montooth, K.L.2    Rand, D.M.3
  • 26
    • 0032779612 scopus 로고    scopus 로고
    • Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA
    • Meyer S, Weiss G, von Haeseler A. 1999. Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA. Genetics. 152:1103-1110.
    • (1999) Genetics , vol.152 , pp. 1103-1110
    • Meyer, S.1    Weiss, G.2    von Haeseler, A.3
  • 27
    • 0041571792 scopus 로고    scopus 로고
    • Phylogenetic network and physiochemical properties of nonsynonymous mutations in the protein-coding genes of human mitochondrial DNA
    • Moilanen JS, Majamaa K. 2003. Phylogenetic network and physiochemical properties of nonsynonymous mutations in the protein-coding genes of human mitochondrial DNA. Mol Biol Evol. 20:1195-1210.
    • (2003) Mol Biol Evol , vol.20 , pp. 1195-1210
    • Moilanen, J.S.1    Majamaa, K.2
  • 29
    • 33746265437 scopus 로고    scopus 로고
    • Mitochondrial DNA variation suggests extensive gene flow from Polynesian ancestors to indigenous Melanesians in the northwestern Bismarck Archipelago
    • Ohashi J, Naka I, Tokunaga K, Inaoka T, Ataka Y, Nakazawa M, Matsumura Y, Ohtsuka R. 2006. Mitochondrial DNA variation suggests extensive gene flow from Polynesian ancestors to indigenous Melanesians in the northwestern Bismarck Archipelago. Am J Phys Anthropol. 130:551-556.
    • (2006) Am J Phys Anthropol , vol.130 , pp. 551-556
    • Ohashi, J.1    Naka, I.2    Tokunaga, K.3    Inaoka, T.4    Ataka, Y.5    Nakazawa, M.6    Matsumura, Y.7    Ohtsuka, R.8
  • 31
    • 22444436365 scopus 로고    scopus 로고
    • Relativity for molecular clocks
    • Penny D. 2005. Relativity for molecular clocks. Nature. 436:183-184.
    • (2005) Nature , vol.436 , pp. 183-184
    • Penny, D.1
  • 32
    • 0000360362 scopus 로고
    • Unequal base frequencies and the estimation of substitution rates
    • Perna NT, Kocher TD. 1995. Unequal base frequencies and the estimation of substitution rates. Mol Biol Evol. 12:359-361.
    • (1995) Mol Biol Evol , vol.12 , pp. 359-361
    • Perna, N.T.1    Kocher, T.D.2
  • 33
    • 0033026606 scopus 로고    scopus 로고
    • Nucleotide substitution rate of mammalian mitochondrial genomes
    • Pesole G, Gissi C, De Chirico A, Saccone C. 1999. Nucleotide substitution rate of mammalian mitochondrial genomes. J Mol Evol. 48:427-434.
    • (1999) J Mol Evol , vol.48 , pp. 427-434
    • Pesole, G.1    Gissi, C.2    De Chirico, A.3    Saccone, C.4
  • 34
    • 0347356538 scopus 로고    scopus 로고
    • Effects of purifying and adaptive selection on regional variation in human mtDNA
    • Ruiz-Pesini E, Mishmar D, Brandon M, Procaccio V, Wallace DC. 2004. Effects of purifying and adaptive selection on regional variation in human mtDNA. Science. 303:223-226.
    • (2004) Science , vol.303 , pp. 223-226
    • Ruiz-Pesini, E.1    Mishmar, D.2    Brandon, M.3    Procaccio, V.4    Wallace, D.C.5
  • 35
    • 0026076060 scopus 로고
    • The main regulatory region of mammalian mitochondrial DNA: Structure-function model and evolutionary pattern
    • Saccone C, Pesole G, Sbisa E. 1991. The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J Mol Evol. 33:83-91.
    • (1991) J Mol Evol , vol.33 , pp. 83-91
    • Saccone, C.1    Pesole, G.2    Sbisa, E.3
  • 37
    • 0344442414 scopus 로고    scopus 로고
    • A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate
    • Samuels DC, Boys RJ, Henderson DA, Chinnery PF. 2003. A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate. Nucleic Acids Res. 31:6043-6052.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6043-6052
    • Samuels, D.C.1    Boys, R.J.2    Henderson, D.A.3    Chinnery, P.F.4
  • 38
    • 0029654101 scopus 로고
    • DNA sequence evolution: The sounds of silence
    • Sharp PM, Averof M, et al. 1995. DNA sequence evolution: the sounds of silence. Philos Trans R Soc Lond B. 349:241-247.
    • (1995) Philos Trans R Soc Lond B , vol.349 , pp. 241-247
    • Sharp, P.M.1    Averof, M.2
  • 40
    • 33846799015 scopus 로고    scopus 로고
    • The role of climate in human mitochondrial DNA evolution: A reappraisal
    • Sun C, Kong Q-P, Zhang Y-P. 2006. The role of climate in human mitochondrial DNA evolution: a reappraisal. Genomics. 89:338-342.
    • (2006) Genomics , vol.89 , pp. 338-342
    • Sun, C.1    Kong, Q.-P.2    Zhang, Y.-P.3
  • 42
    • 0035205417 scopus 로고    scopus 로고
    • Torroni A, Rengo C, Guida V, et al. (12 co-authors). 2001. Do the four clades of the mtDNA haplogroup L2 evolve at different rates? Am J Hum Genet. 69:1348-1356.
    • Torroni A, Rengo C, Guida V, et al. (12 co-authors). 2001. Do the four clades of the mtDNA haplogroup L2 evolve at different rates? Am J Hum Genet. 69:1348-1356.
  • 43
    • 0037388876 scopus 로고    scopus 로고
    • Testing substitution models within a phylogenetic tree
    • Weiss G, von Haeseler A. 2003. Testing substitution models within a phylogenetic tree. Mol Biol Evol. 20:572-578.
    • (2003) Mol Biol Evol , vol.20 , pp. 572-578
    • Weiss, G.1    von Haeseler, A.2
  • 44
    • 3142739466 scopus 로고    scopus 로고
    • Detecting selection in noncoding regions of nucleotide sequences
    • Wong WSW, Nielsen R. 2004. Detecting selection in noncoding regions of nucleotide sequences. Genetics. 167:949-958.
    • (2004) Genetics , vol.167 , pp. 949-958
    • Wong, W.S.W.1    Nielsen, R.2
  • 45
    • 0000993098 scopus 로고
    • 2 test
    • 2 test. J R Stat Soc. (Suppl 1):217-235.
    • (1934) J R Stat Soc , Issue.SUPPL. 1 , pp. 217-235
    • Yates, F.1
  • 46
    • 33748080427 scopus 로고    scopus 로고
    • Dependence among sites in RNA evolution
    • Yu J, Thorne JL. 2006. Dependence among sites in RNA evolution. Mol Biol Evol. 23:1525-1537.
    • (2006) Mol Biol Evol , vol.23 , pp. 1525-1537
    • Yu, J.1    Thorne, J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.