-
2
-
-
0033117920
-
Distance measures in terms of substitution processes
-
Baake, E. and A. von Haeseler. 1999. Distance measures in terms of substitution processes. Theor. Popul. Biol. 55: 166-175.
-
(1999)
Theor. Popul. Biol.
, vol.55
, pp. 166-175
-
-
Baake, E.1
Von Haeseler, A.2
-
4
-
-
0034786417
-
Rate matrices for analyzing large families of protein sequences
-
Devauchelle, C., A. Grossmann, A. Hénaut, M. Holschneider, M. Monnerot, J. Risler, and B. Torrésan, 2001. Rate matrices for analyzing large families of protein sequences. J. Comp. Biol. 8:381-399.
-
(2001)
J. Comp. Biol.
, vol.8
, pp. 381-399
-
-
Devauchelle, C.1
Grossmann, A.2
Hénaut, A.3
Holschneider, M.4
Monnerot, M.5
Risler, J.6
Torrésan, B.7
-
5
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
6
-
-
0001027766
-
Statistical inference of phylogenies
-
Felsenstein, J. 1983. Statistical inference of phylogenies. J. R. Stat. Soc. Ser. A, 146:246-272.
-
(1983)
J. R. Stat. Soc. Ser. A
, vol.146
, pp. 246-272
-
-
Felsenstein, J.1
-
8
-
-
0028790653
-
Inferring phylogenies from sequences of unequal base composition
-
Galtier, N., and M. Gouy. 1995. Inferring phylogenies from sequences of unequal base composition. Proc. Natl. Acad. Sci. USA 92:11317-11321.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11317-11321
-
-
Galtier, N.1
Gouy, M.2
-
9
-
-
0027526039
-
Statistical tests of models of DNA substitutions
-
Goldman, N. 1993a. Statistical tests of models of DNA substitutions. J. Mol. Evol. 36:182-198.
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 182-198
-
-
Goldman, N.1
-
10
-
-
0027423317
-
Simple diagnostic statistical tests of models of DNA substitutions
-
Goldman, N. 1993b. Simple diagnostic statistical tests of models of DNA substitutions. J. Mol. Evol. 37:650-661.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 650-661
-
-
Goldman, N.1
-
11
-
-
0032789448
-
Multiple sequence alignment: Algorithms and applications
-
Gotoh, O. 1999. Multiple sequence alignment: algorithms and applications. Adv. Biophys. 36:159-206.
-
(1999)
Adv. Biophys.
, vol.36
, pp. 159-206
-
-
Gotoh, O.1
-
12
-
-
0029900516
-
A general additive distance with time-reversibility and rate variation among nucleotide sites
-
Gu, X., and W. H. Li. 1996. A general additive distance with time-reversibility and rate variation among nucleotide sites. Proc. Natl. Acad. Sci. USA 93:4671-4676.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 4671-4676
-
-
Gu, X.1
Li, W.H.2
-
13
-
-
0028894410
-
Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs
-
Horai, S., K. Hayasaka, R. Kondo, K. Tsugane, and N. Takahata. 1995. Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc. Natl. Acad. Sci. USA 92:532-536.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 532-536
-
-
Horai, S.1
Hayasaka, K.2
Kondo, R.3
Tsugane, K.4
Takahata, N.5
-
14
-
-
0344436038
-
DNA sequence varaition in a non-coding region of low recombination on the human X chromosome
-
Kaessmann, H., F. Heissig, A. von Haeseler, and S. Pääbo. 1999. DNA sequence varaition in a non-coding region of low recombination on the human X chromosome. Nat. Genet. 22:78-81.
-
(1999)
Nat. Genet.
, vol.22
, pp. 78-81
-
-
Kaessmann, H.1
Heissig, F.2
Von Haeseler, A.3
Pääbo, S.4
-
15
-
-
0035132473
-
Great ape DNA sequences reveal a reduced diversity and an expansion in humans
-
Kaessmann, H., V. Wiebe, G. Weiss, and S. Pääbo. 2001. Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nat. Genet. 27:155-156.
-
(2001)
Nat. Genet.
, vol.27
, pp. 155-156
-
-
Kaessmann, H.1
Wiebe, V.2
Weiss, G.3
Pääbo, S.4
-
17
-
-
0029930086
-
Modeling nucleotide evolution: A heterogeneous rate analysis
-
Kelly, C., and J. Rice. 1996. Modeling nucleotide evolution: a heterogeneous rate analysis. Math. Biosci. 133:85-109.
-
(1996)
Math. Biosci.
, vol.133
, pp. 85-109
-
-
Kelly, C.1
Rice, J.2
-
18
-
-
0003496662
-
-
Pennsylvania State University, University Park, and Arizona State University, Tempe
-
Kumar, S., K. Tamura, I. Jakobsen, and M. Nei. 2000. MEGA: Molecular Evolutionary Genetics Analysis, ver. 2. Pennsylvania State University, University Park, and Arizona State University, Tempe.
-
(2000)
MEGA: Molecular Evolutionary Genetics Analysis, Ver. 2
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.3
Nei, M.4
-
19
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
-
Lake, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
20
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave, C., G. Preparata, C. Saccone, and G. Serio. 1984. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20:86-93.
-
(1984)
J. Mol. Evol.
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
21
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P. J., M. A. Steel, M. D. Hendy, and D. Penny. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
22
-
-
0023498406
-
Earliest phylogenetic branchings: Comparing rRNA-based evolutionary trees inferred with various techniques
-
Olsen, G. J. 1987. Earliest phylogenetic branchings: comparing rRNA-based evolutionary trees inferred with various techniques. Cold Spring Harbor Symp. Qunatita. Biol. 52: 825-837.
-
(1987)
Cold Spring Harbor Symp. Qunatita. Biol.
, vol.52
, pp. 825-837
-
-
Olsen, G.J.1
-
23
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut, A. and N. C. Grassly. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
24
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
25
-
-
43949153645
-
Recovering a tree from the leaf colourations it generates under a Markov model
-
Steel, M. A. 1993. Recovering a tree from the leaf colourations it generates under a Markov model. Appl. Math. Lett. 7:19-23.
-
(1993)
Appl. Math. Lett.
, vol.7
, pp. 19-23
-
-
Steel, M.A.1
-
26
-
-
0029836454
-
Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
-
Strimmer, K. and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
28
-
-
0001336205
-
Phylogeny reconstruction
-
D. M. Hillis, C. Moritz, and B. A. K. Mable, eds. Sinauer Associates, Sunderland, Mass.
-
Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogeny reconstruction. Pp. 407-514 in D. M. Hillis, C. Moritz, and B. A. K. Mable, eds. Molecular systematics. 2nd edition. Sinauer Associates, Sunderland, Mass.
-
(1996)
Molecular Systematics. 2nd Edition
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
29
-
-
0002671410
-
Some probabilistic and statistical problems in the analysis of DNA sequences
-
Tavaré, S. 1986. Some probabilistic and statistical problems in the analysis of DNA sequences. Lect. Math. Life Sci. 17: 57-86.
-
(1986)
Lect. Math. Life Sci.
, vol.17
, pp. 57-86
-
-
Tavaré, S.1
-
30
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
Uzzel, T., and K. W. Corbin. 1971. Fitting discrete probability distributions to evolutionary events. Science 172:1089-1096.
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzel, T.1
Corbin, K.W.2
-
31
-
-
0031297695
-
General time-reversible distances with unequal rates across sites: Mixing γ and inverse gaussian distributions with invariant sites
-
Waddell, P. J., and M. A. Steel. 1997. General time-reversible distances with unequal rates across sites: mixing γ and inverse gaussian distributions with invariant sites. Mol. Phyl. Evol. 8:398-414.
-
(1997)
Mol. Phyl. Evol.
, vol.8
, pp. 398-414
-
-
Waddell, P.J.1
Steel, M.A.2
-
32
-
-
0027496790
-
Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA
-
Wakeley, J. 1993. Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA. J. Mol. Evol. 37:613-623.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 613-623
-
-
Wakeley, J.1
-
33
-
-
0027132974
-
Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang, Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
34
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
36
-
-
0028961933
-
On the use of nucleic acid sequences to infer early branchings in the tree of life
-
Yang, Z. and D. Roberts. 1995. On the use of nucleic acid sequences to infer early branchings in the tree of life. Mol. Biol. Evol. 12:451-458.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 451-458
-
-
Yang, Z.1
Roberts, D.2
-
37
-
-
0028108336
-
Estimation of evolutionary distances between nucleotide sequences
-
Zharkikh, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 39:315-329.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 315-329
-
-
Zharkikh, A.1
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