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Volumn 65, Issue 3, 2007, Pages 296-303

Protein disulfide oxidoreductases and the evolution of thermophily: Was the last common ancestor a heat-loving microbe?

Author keywords

Horizontal gene transfer; Last common ancestor; Protein disulfide oxidoreductases; Thermophily

Indexed keywords

CELL PROTEIN; OXIDOREDUCTASE; PROTEIN DISULFIDE ISOMERASE;

EID: 35248875651     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-007-9005-0     Document Type: Article
Times cited : (16)

References (42)
  • 3
    • 33845466409 scopus 로고    scopus 로고
    • First lines of divergence in the Bacteria domain were the hyperthermophilic organisms, the Thermotogales and the Aquificales, and not the mesophilic Planctomycetales
    • Barion S, Franchi M, Gallori E, Di Giulio M (2007) First lines of divergence in the Bacteria domain were the hyperthermophilic organisms, the Thermotogales and the Aquificales, and not the mesophilic Planctomycetales. BioSystems 87:13-19
    • (2007) BioSystems , vol.87 , pp. 13-19
    • Barion, S.1    Franchi, M.2    Gallori, E.3    Di Giulio, M.4
  • 5
    • 0037118037 scopus 로고    scopus 로고
    • A non-hyperthermophilic ancestor for Bacteria
    • Brochier C, Philippe H (2002) A non-hyperthermophilic ancestor for Bacteria. Nature 417:244
    • (2002) Nature , vol.417 , pp. 244
    • Brochier, C.1    Philippe, H.2
  • 6
    • 25144485401 scopus 로고    scopus 로고
    • Nanoarchaea: Representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?
    • Brochier C, Gribaldo S, Zivanovic Y, Confalonieri F, Forterre P (2005) Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? (2005) Genome Biol 6:R42
    • (2005) (2005) Genome Biol , vol.6 , pp. 42
    • Brochier, C.1    Gribaldo, S.2    Zivanovic, Y.3    Confalonieri, F.4    Forterre, P.5
  • 7
    • 33644559039 scopus 로고    scopus 로고
    • The antioxidant protein alkylhydroperoxide reductase of Helicobacter pylori switches from a peroxide reductase to a molecular chaperone function
    • Chuang MH, Wu MS, Lo WL, Lin JT, Wong CH, Chiou SH (2006) The antioxidant protein alkylhydroperoxide reductase of Helicobacter pylori switches from a peroxide reductase to a molecular chaperone function. Proc Natl Acad Sci USA 103:2552-2557
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2552-2557
    • Chuang, M.H.1    Wu, M.S.2    Lo, W.L.3    Lin, J.T.4    Wong, C.H.5    Chiou, S.H.6
  • 8
    • 0346104820 scopus 로고    scopus 로고
    • The universal ancestor and the ancestor of bacteria were hyperthermophiles
    • Di Giulio M (2003a) The universal ancestor and the ancestor of bacteria were hyperthermophiles. J Mol Evol 57:721-730
    • (2003) J Mol Evol , vol.57 , pp. 721-730
    • Di Giulio, M.1
  • 9
    • 0142124433 scopus 로고    scopus 로고
    • The ancestor of the Bacteria domain was a hyperthermophile
    • Di Giulio M (2003b) The ancestor of the Bacteria domain was a hyperthermophile. J Theoret Biol 224:277-283
    • (2003) J Theoret Biol , vol.224 , pp. 277-283
    • Di Giulio, M.1
  • 10
    • 33746903166 scopus 로고    scopus 로고
    • Nanoarchaeum equitans is a living fossil
    • Di Giulio M (2006) Nanoarchaeum equitans is a living fossil. J Theoret Biol 242:257-260
    • (2006) J Theoret Biol , vol.242 , pp. 257-260
    • Di Giulio, M.1
  • 11
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny Inference Package (Version 3.2)
    • Felsenstein J (1989) PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5:164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 12
    • 0029899126 scopus 로고    scopus 로고
    • A hot topic: The origin of hyperthermophiles
    • Forterre P (1996) A hot topic: the origin of hyperthermophiles. Cell 85:789-792
    • (1996) Cell , vol.85 , pp. 789-792
    • Forterre, P.1
  • 14
    • 0034175943 scopus 로고    scopus 로고
    • Reverse gyrase from hyperthermophiles: Probable transfer of a thermoadaptation trait from Archaea to Bacteria
    • Forterre P, Bouthier de la Tour C, Philippe H, Duguet M (2000) Reverse gyrase from hyperthermophiles: probable transfer of a thermoadaptation trait from Archaea to Bacteria. Trends Genet 16:152-154
    • (2000) Trends Genet , vol.16 , pp. 152-154
    • Forterre, P.1    Bouthier De La Tour, C.2    Philippe, H.3    Duguet, M.4
  • 15
    • 0033534584 scopus 로고    scopus 로고
    • A nonhyperthermophilic common ancestor to extant life forms
    • Galtier N, Tourasse N, Gouy M (1999) A nonhyperthermophilic common ancestor to extant life forms. Science 283:220-221
    • (1999) Science , vol.283 , pp. 220-221
    • Galtier, N.1    Tourasse, N.2    Gouy, M.3
  • 16
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten JP, Townsend JP (2005) Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 3:679-687
    • (2005) Nat Rev Microbiol , vol.3 , pp. 679-687
    • Gogarten, J.P.1    Townsend, J.P.2
  • 17
    • 0141883460 scopus 로고
    • The effects of heavy meteorite bombardment on the early evolution of life-a new look at the molecular record
    • Gogarten-Boekels M, Hilario E, Gogarten JP (1994) The effects of heavy meteorite bombardment on the early evolution of life-a new look at the molecular record. Origins Life Evol Biosph 25:78-83
    • (1994) Origins Life Evol Biosph , vol.25 , pp. 78-83
    • Gogarten-Boekels, M.1    Hilario, E.2    Gogarten, J.P.3
  • 18
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 19
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27-30
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 20
    • 0028209398 scopus 로고
    • DNA-dependent RNA polymerases as phylogenetic marker molecules
    • Klenk HP, Palm P, Zillig W (1994) DNA-dependent RNA polymerases as phylogenetic marker molecules. Syst Appl Microbiol 16:638-647
    • (1994) Syst Appl Microbiol , vol.16 , pp. 638-647
    • Klenk, H.P.1    Palm, P.2    Zillig, W.3
  • 21
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3:Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2001) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinformatics 5:150-163
    • (2001) Brief Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 22
    • 33748331135 scopus 로고    scopus 로고
    • Protein disulfides and protein disulfide oxidoreductases in hyperthermophiles
    • Ladenstein R, Ren B (2006) Protein disulfides and protein disulfide oxidoreductases in hyperthermophiles. FEBS J 273:4170-4185
    • (2006) FEBS J , vol.273 , pp. 4170-4185
    • Ladenstein, R.1    Ren, B.2
  • 24
    • 0043011009 scopus 로고    scopus 로고
    • Comparative genomics of archaea: How much have we learned in six years, and what's next?
    • Makarova KS, Koonin EV (2003) Comparative genomics of archaea: how much have we learned in six years, and what's next? Genome Biol 4:115-145
    • (2003) Genome Biol , vol.4 , pp. 115-145
    • Makarova, K.S.1    Koonin, E.V.2
  • 25
    • 25144488272 scopus 로고    scopus 로고
    • Evolutionary and functional genomics of the Archaea
    • Makarova KS, Koonin EV (2005) Evolutionary and functional genomics of the Archaea. Curr Opin Microbiol 8:586-594
    • (2005) Curr Opin Microbiol , vol.8 , pp. 586-594
    • Makarova, K.S.1    Koonin, E.V.2
  • 26
    • 0029563260 scopus 로고
    • The origin of life-did it occur at high temperatures?
    • Miller SL, Lazcano A (1995) The origin of life-did it occur at high temperatures? J Mol Evol 41:689-692
    • (1995) J Mol Evol , vol.41 , pp. 689-692
    • Miller, S.L.1    Lazcano, A.2
  • 27
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247:536-540
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 29
    • 0025901140 scopus 로고
    • Origin of life-facing up the physical setting
    • Pace NR (1991) Origin of life-facing up the physical setting. Cell 65:531-533
    • (1991) Cell , vol.65 , pp. 531-533
    • Pace, N.R.1
  • 30
    • 4344586909 scopus 로고    scopus 로고
    • Functional properties of the protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus
    • Pedone E, Ren B, Ladenstein R, Rossi M, Bartolucci S (2004) Functional properties of the protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus. FEBS Eur J Biochem 271:3437-3448
    • (2004) FEBS Eur J Biochem , vol.271 , pp. 3437-3448
    • Pedone, E.1    Ren, B.2    Ladenstein, R.3    Rossi, M.4    Bartolucci, S.5
  • 31
    • 0031816805 scopus 로고    scopus 로고
    • A protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus contains two thioredoxin fold units
    • Ren B, Tibbelin G, de Pascale D, Rossi M, Bartolucci S, Ladenstein R (1998) A protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus contains two thioredoxin fold units. Nat Struct Biol 7:602-611
    • (1998) Nat Struct Biol , vol.7 , pp. 602-611
    • Ren, B.1    Tibbelin, G.2    De Pascale, D.3    Rossi, M.4    Bartolucci, S.5    Ladenstein, R.6
  • 32
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer M, Vingron M, von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, M.2    Vingron, M.3    Von Haeseler, A.4
  • 34
    • 0024857198 scopus 로고
    • Annihilation of ecosystems by large asteroid impacts on the early Earth
    • Sleep NH, Zahnle KJ, Kastings JF, Morowitz NH (1989) Annihilation of ecosystems by large asteroid impacts on the early Earth. Nature 342:139-142
    • (1989) Nature , vol.342 , pp. 139-142
    • Sleep, N.H.1    Zahnle, K.J.2    Kastings, J.F.3    Morowitz, N.H.4
  • 35
  • 36
    • 33750040585 scopus 로고    scopus 로고
    • Hyperthermophiles in the history of life
    • Stetter KO (2006) Hyperthermophiles in the history of life. Philos Trans R Soc Lond B Biol Sci 361:1837-1843
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1837-1843
    • Stetter, K.O.1
  • 37
    • 30344444015 scopus 로고    scopus 로고
    • The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites
    • Tian G, Xiang S, Noiva R, Lennarz WJ, Schindelin H (2006) The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites. Cell 124:61-73
    • (2006) Cell , vol.124 , pp. 61-73
    • Tian, G.1    Xiang, S.2    Noiva, R.3    Lennarz, W.J.4    Schindelin, H.5
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 33750074788 scopus 로고    scopus 로고
    • From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya
    • Wächstershäuser G (2006) From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya. Philos Trans R Soc Lond B Biol Sci 361:1787-1808
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1787-1808
    • Wächstershäuser, G.1
  • 40
    • 0025300402 scopus 로고
    • Towards a natural system of organisms, proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms, proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576-4579
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 41
    • 0035799315 scopus 로고    scopus 로고
    • Structure of intact AhpF reveals a mirrored thioredoxin-like active site and implies large domain rotations during catalysis
    • Wood ZA, Poole LB, Karplus PA (2001) Structure of intact AhpF reveals a mirrored thioredoxin-like active site and implies large domain rotations during catalysis. Biochemistry 13:3900-3911
    • (2001) Biochemistry , vol.13 , pp. 3900-3911
    • Wood, Z.A.1    Poole, L.B.2    Karplus, P.A.3
  • 42
    • 29944434209 scopus 로고    scopus 로고
    • Ancient gene duplications and the root(s) of the tree of life
    • Zhaxybayeva O, Lapierre P, Gogarten JP (2005) Ancient gene duplications and the root(s) of the tree of life. Protoplasma 227:53-64
    • (2005) Protoplasma , vol.227 , pp. 53-64
    • Zhaxybayeva, O.1    Lapierre, P.2    Gogarten, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.