메뉴 건너뛰기




Volumn 424, Issue , 2007, Pages 369-386

Probing Adenosine-to-Inosine Editing Reactions Using RNA-Containing Nucleoside Analogs

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; ADENOSINE DEAMINASE; ADENOSINE DEAMINASE ACTING ON RNA; INOSINE; NUCLEOSIDE ANALOG; PHOSPHORAMIDIC ACID DERIVATIVE; UNCLASSIFIED DRUG; DOUBLE STRANDED RNA; DSRNA ADENOSINE DEAMINASE; OLIGONUCLEOTIDE; RNA;

EID: 34548554580     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(07)24017-0     Document Type: Chapter
Times cited : (14)

References (39)
  • 1
    • 0013864834 scopus 로고
    • Formation and deamination of adenosine by cardiac muscle enzymes
    • Baer H.-P., Drummond G.I., and Duncan E.L. Formation and deamination of adenosine by cardiac muscle enzymes. Mol. Pharmacol. 2 (1966) 67-76
    • (1966) Mol. Pharmacol. , vol.2 , pp. 67-76
    • Baer, H.-P.1    Drummond, G.I.2    Duncan, E.L.3
  • 2
    • 0024233053 scopus 로고
    • An unwinding activity that covalently modifies its double-stranded RNA substrate
    • Bass B.L., and Weintraub H. An unwinding activity that covalently modifies its double-stranded RNA substrate. Cell 55 (1988) 1089-1098
    • (1988) Cell , vol.55 , pp. 1089-1098
    • Bass, B.L.1    Weintraub, H.2
  • 3
    • 4744347763 scopus 로고    scopus 로고
    • Control of human potassium channel inactivation by editing of a small mRNA hairpin
    • Bhalla T., Rosenthal J.J.C., Holmgren M., and Reenan R. Control of human potassium channel inactivation by editing of a small mRNA hairpin. Nat. Struct. Mol. Biol. 11 (2004) 950-956
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 950-956
    • Bhalla, T.1    Rosenthal, J.J.C.2    Holmgren, M.3    Reenan, R.4
  • 5
    • 0032473349 scopus 로고    scopus 로고
    • Episodic ataxia type-1 mutations in the hKv1.1 cytoplasmic pore region alter the gating properties of the channel
    • D'Adamo M.C., Liu Z., Adelman J.P., Maylie J., and Pessia M. Episodic ataxia type-1 mutations in the hKv1.1 cytoplasmic pore region alter the gating properties of the channel. EMBO J. 17 (1998) 1200-1207
    • (1998) EMBO J. , vol.17 , pp. 1200-1207
    • D'Adamo, M.C.1    Liu, Z.2    Adelman, J.P.3    Maylie, J.4    Pessia, M.5
  • 7
    • 27744509072 scopus 로고    scopus 로고
    • Nucleotide analogues to investigate RNA structure and function
    • Das S.R., Fong R., and Piccirilli J.A. Nucleotide analogues to investigate RNA structure and function. Curr. Opin. Chem. Biol. 9 (2005) 585-593
    • (2005) Curr. Opin. Chem. Biol. , vol.9 , pp. 585-593
    • Das, S.R.1    Fong, R.2    Piccirilli, J.A.3
  • 8
    • 0034703723 scopus 로고    scopus 로고
    • Demethylation of 6-O-methylinosine by an RNA-editing adenosine deaminase
    • Easterwood L.M., Veliz E.A., and Beal P.A. Demethylation of 6-O-methylinosine by an RNA-editing adenosine deaminase. J. Am. Chem. Soc. 122 (2000) 11537-11538
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 11537-11538
    • Easterwood, L.M.1    Veliz, E.A.2    Beal, P.A.3
  • 9
    • 0013878432 scopus 로고
    • Specificity of adenosine deaminase toward adenosine and 2′-deoxyadenosine analogs
    • Frederiksen S. Specificity of adenosine deaminase toward adenosine and 2′-deoxyadenosine analogs. Arch. Biochem. Biophys. 113 (1966) 383-388
    • (1966) Arch. Biochem. Biophys. , vol.113 , pp. 383-388
    • Frederiksen, S.1
  • 11
    • 0037171846 scopus 로고    scopus 로고
    • Altered editing of serotonin 2C receptor pre-mRNA in the prefontal cortex of depressed suicide victims
    • Gurevich I., Tamir H., Arango V., Dwork A.J., Mann J.J., and Schmauss C. Altered editing of serotonin 2C receptor pre-mRNA in the prefontal cortex of depressed suicide victims. Neuron 34 (2002) 349-356
    • (2002) Neuron , vol.34 , pp. 349-356
    • Gurevich, I.1    Tamir, H.2    Arango, V.3    Dwork, A.J.4    Mann, J.J.5    Schmauss, C.6
  • 13
    • 0027772363 scopus 로고
    • RNA editing of AMPA receptor subunit GluR-B: A base-paired intron-exon structure determines position and efficiency
    • Higuchi M., Single F.N., Kohler M., Sommer B., Sprengel R., and Seeburg P.H. RNA editing of AMPA receptor subunit GluR-B: A base-paired intron-exon structure determines position and efficiency. Cell 75 (1993) 1361-1370
    • (1993) Cell , vol.75 , pp. 1361-1370
    • Higuchi, M.1    Single, F.N.2    Kohler, M.3    Sommer, B.4    Sprengel, R.5    Seeburg, P.H.6
  • 15
    • 0038645126 scopus 로고    scopus 로고
    • RNA editing of serotonin 2C in human postmortem brains of major mental disorders
    • Iwamoto K., and Kato T. RNA editing of serotonin 2C in human postmortem brains of major mental disorders. Neurosci. Lett. 346 (2003) 169-172
    • (2003) Neurosci. Lett. , vol.346 , pp. 169-172
    • Iwamoto, K.1    Kato, T.2
  • 16
    • 0029155379 scopus 로고
    • Electrophoretic mobility shift assay
    • Kerr L.D. Electrophoretic mobility shift assay. Methods Enzymol. 254 (1995) 619-632
    • (1995) Methods Enzymol. , vol.254 , pp. 619-632
    • Kerr, L.D.1
  • 17
    • 0028010888 scopus 로고
    • HhaI methyltransferase flips its target base out of the DNA helix
    • Kilmasauskas S., Kumar S., Roberts R.J., and Cheng X. HhaI methyltransferase flips its target base out of the DNA helix. Cell 76 (1994) 357-369
    • (1994) Cell , vol.76 , pp. 357-369
    • Kilmasauskas, S.1    Kumar, S.2    Roberts, R.J.3    Cheng, X.4
  • 18
    • 32244445417 scopus 로고    scopus 로고
    • Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA
    • Losey H.C., Ruthenburg A.J., and Verdine G.L. Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA. Nat. Struc. Mol. Biol. 13 (2006) 153-159
    • (2006) Nat. Struc. Mol. Biol. , vol.13 , pp. 153-159
    • Losey, H.C.1    Ruthenburg, A.J.2    Verdine, G.L.3
  • 19
    • 4644339417 scopus 로고    scopus 로고
    • Evidence for auto-inhibition by the N-terminus of hADAR2 and activation by dsRNA binding
    • Macbeth M.R., Lingam A.T., and Bass B.L. Evidence for auto-inhibition by the N-terminus of hADAR2 and activation by dsRNA binding. RNA 10 (2004) 1563-1571
    • (2004) RNA , vol.10 , pp. 1563-1571
    • Macbeth, M.R.1    Lingam, A.T.2    Bass, B.L.3
  • 20
    • 24644519954 scopus 로고    scopus 로고
    • Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing
    • Macbeth M.R., Schubert H.L., VanDemark A.P., Lingam A.T., Hill C.P., and Bass B.L. Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing. Science 309 (2005) 1534-1539
    • (2005) Science , vol.309 , pp. 1534-1539
    • Macbeth, M.R.1    Schubert, H.L.2    VanDemark, A.P.3    Lingam, A.T.4    Hill, C.P.5    Bass, B.L.6
  • 21
    • 33748627443 scopus 로고    scopus 로고
    • C6-substituted analogues of 8-azanebularine: Probes of an RNA-editing enzyme active site
    • Maydanovych O., and Beal P.A. C6-substituted analogues of 8-azanebularine: Probes of an RNA-editing enzyme active site. Org. Lett. 8 (2006) 3753-3756
    • (2006) Org. Lett. , vol.8 , pp. 3753-3756
    • Maydanovych, O.1    Beal, P.A.2
  • 22
    • 0026680843 scopus 로고
    • Site-specific modification of pre-mRNA: The 2′-hydroxyl groups at the splice sites
    • Moore M.J., and Sharp P.A. Site-specific modification of pre-mRNA: The 2′-hydroxyl groups at the splice sites. Science 256 (1992) 992-997
    • (1992) Science , vol.256 , pp. 992-997
    • Moore, M.J.1    Sharp, P.A.2
  • 23
    • 0021146443 scopus 로고
    • Reductive deamination of aminopurine nucleosides
    • Nair V., and Chamberlain S.D. Reductive deamination of aminopurine nucleosides. Synthesis 5 (1984) 401-403
    • (1984) Synthesis , vol.5 , pp. 401-403
    • Nair, V.1    Chamberlain, S.D.2
  • 25
    • 0034682706 scopus 로고    scopus 로고
    • A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity
    • Palladino M.J., Keegan L.P., O'Connell M.A., and Reenan R.A. A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity. Cell 102 (2000) 437-449
    • (2000) Cell , vol.102 , pp. 437-449
    • Palladino, M.J.1    Keegan, L.P.2    O'Connell, M.A.3    Reenan, R.A.4
  • 26
    • 0030763923 scopus 로고    scopus 로고
    • The GluR2 (GluR-B) hypothesis: Ca2+-permeable AMPA receptors in neurological disorders
    • Pellegrini-Giampietro D.E., Gorter J.A., Bennett M.V.L., and Zukin R.S. The GluR2 (GluR-B) hypothesis: Ca2+-permeable AMPA receptors in neurological disorders. Trends Neurosci. 20 (1997) 464-470
    • (1997) Trends Neurosci. , vol.20 , pp. 464-470
    • Pellegrini-Giampietro, D.E.1    Gorter, J.A.2    Bennett, M.V.L.3    Zukin, R.S.4
  • 27
    • 33947510692 scopus 로고    scopus 로고
    • High-throughput screening for functional adenosine to inosine RNA editing systems
    • Pokharel S., and Beal P.A. High-throughput screening for functional adenosine to inosine RNA editing systems. ACS Chem. Biol. 1 (2006) 761-765
    • (2006) ACS Chem. Biol. , vol.1 , pp. 761-765
    • Pokharel, S.1    Beal, P.A.2
  • 29
    • 0031867015 scopus 로고    scopus 로고
    • 8-Azaadenosine and its 2′-deoxyribonucleoside: Synthesis and oligonucleotide base-pair stability
    • Seela F., Munster I., Lochner U., and Rosemeyer H. 8-Azaadenosine and its 2′-deoxyribonucleoside: Synthesis and oligonucleotide base-pair stability. Helv. Chim. Acta 81 (1998) 1139-1155
    • (1998) Helv. Chim. Acta , vol.81 , pp. 1139-1155
    • Seela, F.1    Munster, I.2    Lochner, U.3    Rosemeyer, H.4
  • 30
    • 0034633941 scopus 로고    scopus 로고
    • Analysis of the RNA-editing reaction of ADAR2 with structural and fluorescent analogues of the GluR-B R/G editing site
    • Stephens O.M., Yi-Brunozzi H.-Y., and Beal P.A. Analysis of the RNA-editing reaction of ADAR2 with structural and fluorescent analogues of the GluR-B R/G editing site. Biochemistry 39 (2000) 12243-12251
    • (2000) Biochemistry , vol.39 , pp. 12243-12251
    • Stephens, O.M.1    Yi-Brunozzi, H.-Y.2    Beal, P.A.3
  • 31
    • 4644234057 scopus 로고    scopus 로고
    • The binding selectivity of ADAR2's dsRBMs contributes to RNA-editing selectivity
    • Stephens O.M., Haudenschild B.L., and Beal P.A. The binding selectivity of ADAR2's dsRBMs contributes to RNA-editing selectivity. Chem. Biol. 11 (2004) 1239-1250
    • (2004) Chem. Biol. , vol.11 , pp. 1239-1250
    • Stephens, O.M.1    Haudenschild, B.L.2    Beal, P.A.3
  • 32
    • 0033579953 scopus 로고    scopus 로고
    • Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase
    • Stivers J.T., Pankiewicz K.W., and Watanabe K.A. Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase. Biochemistry 38 (1999) 952-963
    • (1999) Biochemistry , vol.38 , pp. 952-963
    • Stivers, J.T.1    Pankiewicz, K.W.2    Watanabe, K.A.3
  • 33
    • 0037112823 scopus 로고    scopus 로고
    • RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans
    • Tonkin L.A., Saccomanno L., Morse D.P., Brodigan T., Krause M., and Bass B.L. RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans. EMBO J. 21 (2002) 6025-6035
    • (2002) EMBO J. , vol.21 , pp. 6025-6035
    • Tonkin, L.A.1    Saccomanno, L.2    Morse, D.P.3    Brodigan, T.4    Krause, M.5    Bass, B.L.6
  • 34
    • 0035922357 scopus 로고    scopus 로고
    • Synthesis and analysis of RNA containing 6-trifluoromethylpurine ribonucleoside
    • Veliz E.A., Stephens O.M., and Beal P.A. Synthesis and analysis of RNA containing 6-trifluoromethylpurine ribonucleoside. Org. Lett. 3 (2001) 2969-2972
    • (2001) Org. Lett. , vol.3 , pp. 2969-2972
    • Veliz, E.A.1    Stephens, O.M.2    Beal, P.A.3
  • 35
    • 0042734808 scopus 로고    scopus 로고
    • Substrate analogues for an RNA-editing adenosine deaminase: Mechanistic investigation and inhibitor design
    • Veliz E.A., Easterwood L.M., and Beal P.A. Substrate analogues for an RNA-editing adenosine deaminase: Mechanistic investigation and inhibitor design. J. Am. Chem. Soc. 125 (2003) 10867-10876
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 10867-10876
    • Veliz, E.A.1    Easterwood, L.M.2    Beal, P.A.3
  • 37
    • 0034535312 scopus 로고    scopus 로고
    • Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis
    • Wang Q., Khiltan J., Gadue P., and Nishikura K. Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science 290 (2000) 1765-1768
    • (2000) Science , vol.290 , pp. 1765-1768
    • Wang, Q.1    Khiltan, J.2    Gadue, P.3    Nishikura, K.4
  • 38
  • 39
    • 0035851115 scopus 로고    scopus 로고
    • Conformational changes that occur during an RNA-editing adenosine deamination reaction
    • Yi-Brunozzi H.-Y., Stephens O.M., and Beal P.A. Conformational changes that occur during an RNA-editing adenosine deamination reaction. J. Biol. Chem. 276 (2001) 37827-37833
    • (2001) J. Biol. Chem. , vol.276 , pp. 37827-37833
    • Yi-Brunozzi, H.-Y.1    Stephens, O.M.2    Beal, P.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.