Isolation and comparative analysis of the wheat TaPT2 promoter: Identification in silico of new putative regulatory motifs conserved between monocots and dicots

Journal of Experimental Botany

Volumn 58, Issue 10, 2007, Pages 2573-2582

  Tittarelli, A ^a   Milla, L ^b   Vargas, F ^a,b   Morales, A ^a   Neupert, C ^b   Meisel, L A ^a   Salvo G, H ^c   Penaloza E ^c   Munoz G ^c   Corcuera, L J ^d   Silva, H ^a  

^a UNIVERSIDAD ANDRÉS BELLO   (Chile)

^b UNIVERSITY OF CHILE   (Chile)

^c INSTITUTO DE INVESTIGACIONES AGROPECUARIAS   (Chile)

^d UNIVERSITY OF CONCEPCIÓN   (Chile)

Author keywords

Arabidopsis thaliana; High affinity phosphate transporter; Promoter; Triticum aestivum

Indexed keywords

GENE EXPRESSION; PHOSPHATES; PLANTS (BOTANY); TISSUE;

ARABIDOPSIS THALIANA; HIGH AFFINITY PHOSPHATE TRANSPORTERS; PROMOTERS; TRITICUM AESTIVUM;

CROPS;

BETA GLUCURONIDASE; PHOSPHATE; PHOSPHATE TRANSPORTER; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; BIOLOGY; CHEMISTRY; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT ROOT; PROMOTER REGION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; TRANSGENIC PLANT; WHEAT;

ARABIDOPSIS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION, PLANT; GLUCURONIDASE; MOLECULAR SEQUENCE DATA; PHOSPHATE TRANSPORT PROTEINS; PHOSPHATES; PLANT PROTEINS; PLANT ROOTS; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS (GENETICS); SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN; TRITICUM;

ARABIDOPSIS; ARABIDOPSIS THALIANA; DICOTYLEDONEAE; HORDEUM; LILIOPSIDA; TRITICUM AESTIVUM;

EID: 34548433862     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erm123     Document Type: Article

References (55)

1. Bailey TL, Elkan C. 1995. The value of prior knowledge in discovering motifs with MEME. In: Rawlings C, Clark D, Altman R, Hunter L, Lengauer T, Wodak S, eds. Proceedings of the Third International Conference on Intelligent Systems in Molecular Biology. Menlo Park, CA: The AAAI Press, 21-29.
2. Bari R, Pant BD, Stitt M, Scheible WR. 2006. PHO2, Micro-RNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiology 141, 988-999.
3. Blanchette M, Sinha S. 2001. Separating real motifs from their artifacts. Bioinformatics 17, S30-S38.
4. Bradford MM. 1976. A rapid and sensitive method for quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry 72, 248-254.
5. Chen S, Hajirezaei M, Peisker M, Tschiersch H, Sonnewald U, Bornke F. 2005. Decreased sucrose-6-phosphate phosphatase level in transgenic tobacco inhibits photosynthesis, alters carbohydrate partitioning, and reduces growth. Planta 221, 479-492.
6. Clough SJ, Bent AF. 1998. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. The Plant Journal 16, 735-743.
7. Daram P, Brunner S, Persson BL, Amrhein N, Bucher M. 1998. Functional analysis and cell-specific expression of a phosphate transporter from tomato. Planta 206, 225-233.
8. Das OP, Alvarez C, Chaudhuri S, Messing J. 1990. Molecular methods for genetic analysis of maize. Methods in Molecular and Cellular Biology 1, 213-222.
9. Davies TGE, Ying J, Xu Q, Li ZS, Li J, Gordon-Weeks R. 2002. Expression analysis of putative high-affinity phosphate transporters in Chinese winter wheats. Plant, Cell and Environment 25, 1325-1339.
10. Diatloff E, Roberts M, Sanders D, Roberts SK. 2004. Characterization of anion channels in the plasma membrane of Arabidopsis epidermal root cells and the identification of a citrate-permeable channel induced by phosphate starvation. Plant Physiology 136, 4136-4149.
11. Eastmond PJ, Graham IA. 2003. Trehalose metabolism: a regulatory role for trehalose-6-phosphate? Current Opinion in Plant Biology 6, 231-235.
12. Elmayan T, Tepfer M. 1995. Evaluation in tobacco of the organ specificity and strength of the rolD promoter, domain A of the 35S promoter and the 35S2 promoter. Transgenic Research 4, 388-396.
13. Fernie AR, Carrari F, Sweetlove LJ. 2004. Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Current Opinion in Plant Biology 7, 254-261.
14. Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK. 2005. A miRNA involved in phosphate-starvation response in Arabidopsis. Current Biology 15, 2038-2043.
15. Glassop D, Smith SE, Smith FW. 2005. Cereal phosphate transporters associated with the mycorrhizal pathway of phosphate uptake into roots. Planta 222, 688-698.
16. Gonzalez J, Reyes F, Salas C, Santiago M, Codriansky Y, Coliheuque N, Silva H. 2006. Arabidopsis thaliana: a model host plant to study plant-pathogen interaction using Chilean field isolates of Botrytis cinerea. Biological Research 39, 221-228.
17. Haran S, Logendra S, Seskar M, Bratanova M, Raskin I. 2000. Characterization of Arabidopsis acid phosphatase promoter and regulation of acid phosphatase expression. Plant Physiology 124, 615-626.
18. Higo K, Ugawa Y, Iwamoto M, Korenaga T. 1999. Plant cis-acting regulatory DNA elements (PLACE) database. Nucleic Acids Research 27, 297-300.
19. Hofmann K, Stoffel W. 1993. TMbase - a database of membrane spanning proteins segments. Biological Chemistry Hoppe-Seyler 347, 166.
20. Iwamoto M, Higo H, Higo K. 2004. Strong expression of the rice catalase gene CatB promoter in protoplasts and roots of both monocots and dicots. Plant Physiology and Biochemistry 42, 241-249.
21. Jefferson RA, Kavanagh TA, Bevan MW. 1987. Gus fusions: β-glucuronidase as a sensitive and versatile gene-fusion marker in higher plants. EMBO Journal 6, 3901-3907.
22. Johnson CS, Kolevski B, Smyth DR. 2002. TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. The Plant Cell 14, 1359-1375.
23. Karandashov V, Bucher M. 2005. Symbiotic phosphate transport in arbuscular mycorrhizas. Trends in Plant Science 10, 22-29.
24. Karandashov V, Nagy R, Wegmuller S, Amrhein N, Bucher M. 2004. Evolutionary conservation of a phosphate transporter in the arbuscular mycorrhizal symbiosis. Proceedings of the National Academy of Sciences, USA 101, 6285-6290.
25. Karthikeyan AS, Varadarajan DK, Mukatira UT, D'Urzo MP, Damsz B, Raghothama KG. 2002. Regulated expression of Arabidopsis phosphate transporters. Plant Physiology 130, 221-233.
26. Koyama T, Ono T, Shimizu M, et al. 2005. Promoter of Arabidopsis thaliana phosphate transporter gene drives root-specific expression of transgene in rice. Journal of Bioscience and Bioengineering 99, 38-42.
27. Kruger NJ, von Schaewen A. 2003. The oxidative pentose phosphate pathway: structure and organisation. Current Opinion in Plant Biology 6, 236-246.
28. Liu ZZ, Wang JL, Huang X, Xu WH, Liu ZM, Fang RX. 2003. The promoter of a rice glycine-rich protein gene, Osgrp-2, confers vascular-specific expression in transgenic plants. Planta 216, 824-833.
29. Lopez-Bucio J, Cruz-Ramirez A, Herrera-Estrella L. 2003. The role of nutrient availability in regulating root architecture. Current Opinion in Plant Biology 6, 280-287.
30. Meijer HJ, Munnik T. 2003. Phospholipid-based signaling in plants. Annual Review of Plant Biology 54, 265-306.
31. Meisel LA, Fonseca B, Gonzalez S, Baeza-Yates R, Cambiazo V, Campos R, Gonzalez M, Orellana A, Retamales J, Silva H. 2005. A rapid and efficient method for purifying high quality total RNA from peaches (Prunus persica) for functional genomics analyses. Biological Research 38, 83-88.
32. Meisel LA, Lam E. 1996. The conserved ELK-homeodomain of KNOTTED-1 contains two regions that signal nuclear localization. Plant Molecular Biology 30, 1-14.
33. Misson J, Raghothama KG, Jain A, et al. 2005. A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proceedings of the National Academy of Sciences, USA 102, 11934-11939.
34. Misson J, Thibaud MC, Bechtold N, Raghothama KG, Nussaume L. 2004. Transcriptional regulation and functional properties of Arabidopsis Pht1;4, a high affinity transporter contributing greatly to phosphate uptake in phosphate deprived plants. Plant Molecular Biology 55, 727-741.
35. Mudge SR, Rae AL, Diatloff E, Smith FW. 2002. Expression analysis suggests novel roles for members of the Pht1 family of phosphate transporters in Arabidopsis. The Plant Journal 31, 341-353.
36. Mukatira UT, Liu C, Varadarajan DK, Raghothama KG. 2001. Negative regulation of phosphate starvation-induced genes. Plant Physiology 127, 1854-1862.
37. Paszkowski U, Kroken S, Roux C, Briggs SP. 2002. Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis. Proceedings of the National Academy of Sciences, USA 99, 13324-13329.
38. Pelligrinineschi AP, Fennell S, Mclean S, Brito RM, Velazquez L, Salgado M, Olivares JJ, Hernandez R, Hoisington D. 2000. Routine transformation system for use with CIMMYT wheat varieties. In: Koholi M, Francis M, eds. Application of biotechnologies to wheat breeding. Proceedings of a Conference at La Estanzuela, Uruguay. 19-20 November 1998, 111-120.
39. Peñaloza E, Gutierrez A, Martínez J, Muñoz G, Bravo L, Corcuera LJ. 2002. Differential gene expression in proteoid root clusters of white lupin (Lupinus albus). Physiologia Plantarum 116, 28-36.
40. Peñaloza E, Muñoz G, Salvo-Garrido H, Silva H, Corcuera LJ. 2005. Phosphate deficiency regulates phosphoenolpyruvate carboxylase expression in proteoid root clusters of white lupin. Journal of Experimental Biology 56, 145-153.
41. Persson BL, Lagerstedt JO, Pratt JR, Pattison-Granberg J, Lundh K, Shokrollahzadeh S, Lundh F. 2003. Regulation of phosphate acquisition in Saccharomyces cerevisiae. Current Genetics 43, 225-244.
42. Rae AL, Cybinski DH, Jarmey JM, Smith FW. 2003. Characterization of two phosphate transporters from barley: evidence for diverse function and kinetic properties among members of the Pht1 family. Plant Molecular Biology 53, 27-36.
43. Raghothama KG. 1999. Phosphate acquisition. Annual Review of Plant Physiology and Plant Molecular Biology 50, 665-693.
44. Reisenauer HM. 1966. Mineral nutrients in soil solution. In: Altman PL, Dittmer DS, eds. Enviromental Biology. Bethesda, MD: Federation of American Societies for Experimental Biology, 507-508.
45. Romer W, Schilling G. 1986. Phosphorus requirement of the wheat plant at various stages of its life cycle. Plant and Soil 91, 221-229.
46. Rubio V, Linhares F, Solano R, Martín AC, Iglesias J, Leyva A, Paz-Ares JA. 2001. A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes & Development 15, 2122-2133.
47. Schünmann PHD, Richardson AE, Smith FW, Delhaize E. 2004a. Characterization of promoter expression patterns derived from the Pht1 phosphate transporter genes of barley (Hordeum vulgare L.). Journal of Experimental Botany 55, 855-865.
48. Schünmann PHD, Richardson AE, Vickers CE, Delhaize E. 2004b. Promoter analysis of the barley Pht1;1 phosphate transporter gene identifies regions controlling root expression and responsiveness to phosphate deprivation. Plant Physiology 136, 4205-4214.
49. Siebert P, Chenchik A, Kellogg D, Lukyanov K, Lukyanov S. 1995. An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Research 23, 1087-1088.
50. Silva H, Yoshioka K, Dooner HK, Klessig DF. 1999. Characterization of a new Arabidopsis mutant exhibiting enhanced disease resistance. Molecular Plant-Microbe Interactions 12, 1053-1063.
51. Sinha S, Tompa M. 2002. Discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Research 30, 5549-5560.
52. Smith FW, Cybinsky DH, Rae AL. 1999. Regulation of expression of genes encoding phosphate transporters in barley roots. In: Gissel-Nielsen G, Jensen A, eds. Plant nutrition - molecular biology and genetics. Dordrecht: Kluwer Academic Publishers, 145-150.
53. Smith FW, Rae AL, Hawkesford MJ. 2000. Molecular mechanisms of phosphate and sulphate transport in plants. Biochimica et Biophysica Acta 1465, 236-245.
54. Thijs G, Marchal K, Lescot M, Rombauts S, De Moor B, Rouzé P, Moreau Y. 2002. A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. Journal of Computational Biology 9, 447-464.
55. Ticconi CA, Abel S. 2004. Short on phosphate: plant surveillance and countermeasures. Trends in Plant Science 9, 548-555.