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Volumn 17, Issue SUPPL. 1, 2001, Pages

Separating real motifs from their artifacts

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FUNGAL DNA;

EID: 0012621510     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.suppl_1.S30     Document Type: Article
Times cited : (34)

References (17)
  • 1
    • 0002759539 scopus 로고
    • Unsupervised learning of multiple motifs in biopolymers using expectation maximization
    • Bailey, T. L. & Elkan, C. (1995). Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning, 21, 51-80.
    • (1995) Machine Learning , vol.21 , pp. 51-80
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C. E., Altschul, S. F., Boguski, M. S., Liu, J. S., Neuwald, A. F. & Wootton, J. C. (1993). Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 11
    • 0033289316 scopus 로고    scopus 로고
    • An exact method for finding short motifs in sequences, with application to the ribosome binding site problem
    • AAAI Press, Heidelberg, Germany
    • Tompa, M. (1999). An exact method for finding short motifs in sequences, with application to the ribosome binding site problem. In Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Heidelberg, Germany, pp. 262-271.
    • (1999) Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology , pp. 262-271
    • Tompa, M.1
  • 12
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden, J., André, B. & Collado-Vides, J. (1998). Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. Journal of Molecular Biology, 281, 827-842.
    • (1998) Journal of Molecular Biology , vol.281 , pp. 827-842
    • Van Helden, J.1    André, B.2    Collado-Vides, J.3
  • 13
    • 0034651804 scopus 로고    scopus 로고
    • Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals
    • van Helden, J., del Olmo, M. & Pérez-Ortin, J. E. (2000). Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals. Nucleic Acids Research, 28.
    • (2000) Nucleic Acids Research , pp. 28
    • Van Helden, J.1    Del Olmo, M.2    Pérez-Ortin, J.E.3
  • 16
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: A database on transcription factors and their DNA binding sites
    • Wingender, E., Dietze, P., Karas, H. & Knüppel, R. (1996). TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Research, 24, 238-241. http://transfac.gbf-braunschweig.de/TRANSFAC/.
    • (1996) Nucleic Acids Research , vol.24 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knüppel, R.4
  • 17
    • 0032861774 scopus 로고    scopus 로고
    • SCPD: A promoter database of the yeast Saccharomyces cerevisiae
    • Zhu, J. & Zhang, M. Q. (1999). SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics, 15, 563-577. http://cgsigma.cshl.org/jian/.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Zhu, J.1    Zhang, M.Q.2


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