The analysis of Neisseria meningitidis proteomes: Reference maps and their applications

Proteomics

Volumn 7, Issue 16, 2007, Pages 2933-2946

  Bernardini, Giulia ^a   Braconi, Daniela ^a   Santucci, Annalisa ^a  

^a UNIVERSITY OF SIENA   (Italy)

Author keywords

Microevolution; Neisseria meningitidis; Reference map; Two dimensional gel electrophoresis

Indexed keywords

MENINGOCOCCUS VACCINE; UNCLASSIFIED DRUG; VA MENGOC BC;

BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; GENE MAPPING; GENE SEQUENCE; HUMAN; MENINGOCOCCOSIS; NEISSERIA MENINGITIDIS; PATHOGENESIS; PREVALENCE; PRIORITY JOURNAL; PROPHYLAXIS; PROTEIN ANALYSIS; PROTEOMICS; REVIEW; TWO DIMENSIONAL GEL ELECTROPHORESIS; VACCINATION;

BACTERIAL PROTEINS; BACTERIAL VACCINES; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; MENINGITIS, BACTERIAL; NEISSERIA MENINGITIDIS; PROTEOME; RNA, MESSENGER; VIRULENCE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; NEISSERIA MENINGITIDIS;

EID: 34548391906     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700094     Document Type: Review

References (97)

1. Weichselbaum, A., Fortschr. Med. 1887, 5, 573-583.
2. Yazdankhah, S. P., Caugant, D. A., J. Med. Microbiol. 2004, 53, 821-832.
3. van Deuren, M., Brandtzaeg, P., van der Meer, J. W., Clin. Microbiol. Rev. 2000, 13, 144-166.
4. Taha, M. K., Deghmane, A. E., Antignac, A., Zarantonelli, M. L. et al., Trends Microbiol. 2002, 10, 376-382.
5. Wang, J., Caugant, D. A., Li, X., Hu, X. et al., Infect. Immun. 1992, 60, 5267-5282.
6. Maiden, M. C., Bygraves, J. A., Feil, E., Morelli, G. et al., Proc. Natl. Acad. Sci. USA 1998, 95, 3140-3145.
7. Urwin, R., Maiden, M. C., Trends Microbiol. 2003, 11, 479-487.
8. Parkhill, J., Achtman, M., James, K. D., Bentley, S. D. et al., Nature 2000, 404, 502-506.
9. Tettelin, H., Saunders, N. J., Heidelberg, J., Jeffries, A. C. et al., Science 2000, 287, 1809-1815.
10. Blackwell, C. C., Weir, D. M., James, V. S., Todd, W. T. et al., Epidemiol. Infect. 1990, 104, 203-209.
11. Tzeng, Y. L., Stephens, D. S., Microbes Infect. 2000, 2, 687-700.
12. Rosenstein, N. E., Perkins, B. A., Stephens, D. S., Popovic, T., Hughes, J. M., N. Engl. J. Med. 2001, 344, 1378-1388.
13. Fraser, C. M., Eisen, J. A., Salzberg, S. L., Nature 2000, 406, 799-803.
14. Mora, M., Donati, C., Medini, D., Covacci, A., Rappuoli, R., Curr. Opin. Microbiol. 2006, 9, 532-536.
15. Cordwell, S. J., Nouwens, A. S., Walsh, B. J., Proteomics 2001, 1, 461-472.
16. Washburn, M. P., Yates, J. R., III, Curr. Opin. Microbiol. 2000, 3, 292-297.
17. Bunai, K., Yamane, K.J., Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2005, 815, 227-236.
18. VanBogelen, R. A., Abshire, K. Z., Pertsemlidis, A., Clark, R. L., Neidhart, F. C., in: Neidhart, F. C., Curtiss, R., Ingraham, J. L., Lin, E. C. C. (Eds.), Escherichia coli and Salmonella: Cellular and Molecular Biology, ASM Press, Washington, D.C. 1996, pp. 2067.
19. Tonella, L., Walsh, B. J., Sanchez, J. C., Ou, K. et al., Electrophoresis 1998, 19, 1960-1971.
20. Ohlmeier, S., Scharf, C., Hecker, M., Electrophoresis 2000, 21, 3701-3709.
21. Hecker, M., Engelmann, S. Int. J. Med. Microbiol. 2000, 290, 123-134.
22. Fountoulakis, M., Takacs, B., Langen, H., Electrophoresis 1998, 19, 761-766.
23. Fountoulakis, M., Takacs, M. F., Berndt, P., Langen, H., Takacs, B., Electrophoresis 1999, 20, 2181-2195.
24. Bumann, D., Meyer, T. F., Jungblut, P. R., Proteomics 2001, 1, 473-479.
25. Jungblut, P. R., Bumann, D., Haas, G., Zimny-Arndt, U. et al., Mol. Microbiol. 2000, 36, 710-725.
26. Mini, R., Figura, N., D'Ambrosio, C., Braconi, D. et al., Proteomics 2005, 5, 777-787.
27. Mini, R., Bernardini, G., Salzano, A. M., Renzone, G. et al., J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2006, 833, 63-79.
28. Rosenkrands, I., King, A., Weldingh, K., Moniatte, M. et al., Electrophoresis 2000, 21, 3740-3756.
29. Mattow, J., Jungblut, P. R., Muller, E. C., Kaufmann, S. H., Proteomics 2001, 1, 494-507.
30. Cash, P., in: Hecker, M., Müllner, S. (Eds.), Advances in Biochemical Engineering/Biotechnolgy: Proteomics of Microrganisms - Fundamental Aspects and Applications, Springer-Verlag, Heidelberg, Germany, 2003, 83, 93-115.
31. Langen, H., Takacs, B., Evers, S., Berndt, P. et al., Electrophoresis 2000, 21, 411-429.
32. Link, A. J., Hays, L. G., Carmack, E. B., Yates, J. R., III, Electrophoresis 1997, 18, 1314-1334.
33. VanBogelen, R. A., Abshire, K. Z., Moldover, B., Olson, E. R., Neidhardt, F. C., Electrophoresis 1997, 18, 1243-1251.
34. Cash, P., Electrophoresis 2000, 21, 1187-1201.
35. Bernardini, G., Renzone, G., Comanducci, M., Mini, R. et al., Proteomics 2004, 4, 2893-2926.
36. Zhu, P., van der Ende, A., Falush, D., Brieske, N. et al., Proc. Natl. Acad. Sci. USA 2001, 98, 5234-5239.
37. Vandhal, B. B., Birkelund, S., Demol, H., Hoorelbeke, B. et al., Electrophoresis 2001, 22, 1024-1223.
38. Hitchen, P. G., Dell, A., Microbiology 2006, 152, 1575-1580.
39. Levine, A., Vannier, F., Absalon, C., Kuhn, L. et al., Proteomics 2006, 6, 2157-2173.
40. Nowens, A. S., Bradley, J. W., Cordwell, S. J., in: Hecker, M., Müllner, S. (Eds.), Advances in Biochemical Engineering/Biotechnolgy: Proteomics of Microrganisms - Fundamental Aspects and Applications, Springer-Verlag, Heidelbreg, Germany 2003, 83, 117-140.
41. Leighton, M. P., Kelly, D. J., Williamson, M. P., Shaw, J. G., Microbiology 2001, 147, 1473-1482.
42. Cordwell, S. J., Curr. Opin. Microbiol. 2006, 9, 320-329.
43. Zimmer, S. M., Stephens, D. S., Expert Opin. Pharmacother. 2004, 5, 855-863.
44. Serrato, D., Adu-Bobie, J., Capecchi, B., Rappuoli, R. et al., J. Biotechnol. 2004, 113, 15-32.
45. Rappuoli, R., Vaccine 2001, 19, 2688-2691.
46. Mignogna, G., Giorni, A., Stefanelli, P., Neri, A. et al., J. Proteome Res. 2005, 4, 1361-1370.
47. Schauder, S., Penna, L., Ritton, A., Manin, C. et al., J. Bacteriol. 2005, 187, 392-395.
48. Uli, L., Castellanos-Serra, L., Betancourt, L., Dominguez, F. et al., Proteomics 2006, 6, 3389-3399.
49. Ferrari, G., Garaguso, I., Adu-Bobie, J., Doro, F. et al., Proteomics 2006, 6, 1856-1866.
50. Sanchez, S., Arenas, J., Abel, A., Criado, M. T., Ferreiros, C. M., J. Proteome Res. 2005, 4, 91-95.
51. Vaughan, T. E., Skipp, P. J., O'Connor, C. D., Hudson, M. J. et al., Vaccine 2006, 24, 5277-5293.
52. Post, D. M., Zhang, D., Eastvold, J. S., Teghanemt, A. et al., J. Biol. Chem. 2005, 280, 38383-38394.
53. Vipond, C., Suker, J., Jones, C., Tang, C. et al., Proteomics 2006, 6, 3400-3413.
54. Norais, N., Nogarotto, R., Lacobini, E. T., Garaguso, I. et al., Proteomics 2001, 1, 1378-1389.
55. Molloy, M. P., Herbert, B. R., Walsh, B. J., Tyler, M. I. et al., Electrophoresis 1998, 19, 837-844.
56. Li, J., Tremblay, T., Wang, C., Attiya, S. et al., Proteomics 2001, 1, 975-986.
57. McCarthy, J., Hopwood, F., Oxley, D., Laver, M. et al., J. Proteome Res. 2003, 2, 239-242.
58. Herbert, B., Hopwood, F., Oxley, D., McCarthy, J. et al., Proteomics 2003, 3, 826-831.
59. Tsai, C. M., Frasch, C. E., Rivera, E., Hochstein, H. D., J. Biol. Stand 1989, 17, 249-258.
60. Nikaido, H., Microbiol. Mol. Biol. Rev. 2003, 67, 593-656.
61. Baik, S. C., Kim, K. M., Song, S. M., Kim, D. S. et al., J. Bacteriol. 2004, 186, 949-955.
62. Molloy, M. P., Phadke, N. D., Maddock, J. R., Andrews, P. C., Electrophoresis 2001, 22, 1686-1696.
63. Vipond, C., Wheeler, J. X., Jones, C., Feavers, I. M., Suker, J., Hum. Vaccin. 2005, 1, 80-84.
64. Abadi, F. J., Carter, P. E., Cash, P., Pennington, T. H., Antimicrob. Agents Chemother. 1996, 40, 646-651.
65. Cash, P., Argo, E., Bruce, K. D., Electrophoresis 1995, 16, 135-148.
66. Roe, M. R., Griffin, T. J., Proteomics 2006, 6, 4678-4687.
67. Fisher, H., Wolters, D., Rögner, M., Poetsch, A., Mol. Cell. Proteomics 2006, 6, 444-453.
68. Florens, L., Washburn, M. P., Raiene, J. D., Anthony, R. M. et al., Nature, 2002, 419, 520-526.
69. Doolan, D. L., Southwood, S., Freilich, D. A., Sidney, J. et al., Proc. Natl. Acad. Sci., USA 2003, 100, 9952-9957.
70. Hardwidge, P. R., Donohoe, S., Aebersold, R., Finlay, B. B., Proteomics 2006, 6, 2174-2179.
71. Goodchild, A., Raftery, M., Saunders, N. F., Guilhaus, M., Cavicchioli, R., J. Proteome Res. 2005, 4, 473-480.
72. Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Mol. Cell. Proteomics 2002, 1, 376-386.
73. Neher, S. B., Villen, J., Oakes, E. C., Bakalarski, C. E. et al., Mol. Cell 2006, 22, 193-204
74. Choe, L. H., Aggarwall, K., Franck, Z., Lee, K. H., Electrophoresis 2005, 26, 2437-2449.
75. Chong, P. K., Gan, C. S., Pham, T. K., Wright, P. C., J. Proteome Res. 2006, 5, 1232-1240.
76. Shaw, K. J., Morrow, B. J., Curr. Opin. Pharmacol. 2003, 3, 508-512.
77. Valenzuela, L., Chi, A., Beard, S., Orell, A. et al., Biotechnol. Adv. 2006, 24, 197-211.
78. Walduck, A., Rudel, T., Meyer, T. F., Curr. Opin. Microbiol. 2004, 7, 33-38.
79. Rappuoli, R., Proc. Natl. Acad. Sci., USA2000, 97, 13467-13469.
80. Grifantini, R., Bartolini, E., Muzzi, A., Draghi, M. et al., Nat. Biotechnol. 2002, 20, 914-921.
81. Dietrich, G., Kurz, S., Hubner, C., Aepinus, C. et al., J. Bacteriol. 2003, 185, 155-164.
82. Kurz, S., Hubner, C., Aepinus, C., Theiss, S. et al., Vaccine 2003, 21, 768-775.
83. Guckenberger, M., Kurz, S., Aepinus, C., Theiss, S. et al., J. Bacteriol. 2002, 184, 2546-2551.
84. Phillips, C. I., Bogyo, M., Cell. Microbiol. 2005, 7, 1061-1076.
85. Gygi, S. P., Rochon, Y., Franza, B. R., Aebersold, R., Mol. Cell. Biol. 1999, 19, 1720-1730.
86. WHO, Genomic and World Health, World Health Organization, Geneva, 2002.
87. Mora, M., Veggi, D., Santini, L., Pizza, M., Rappuoli, R., Drug Discov. Today 2003, 8, 459-464.
88. Hensel, M., Shea, J. E., Gleeson, C., Jones, M. D. et al., Science 1995, 269, 400-403.
89. Sun, Y. H., Bakshi, S., Chalmers, R., Tang, C. M., Nat. Med. 2000, 6, 1269-1273.
90. Mahan, M. J., Slauch, J. M., Mekalanos, J. J., Science 1993, 259, 686-688.
91. Grandi, G., Int. J. Parasitol. 2003, 33, 615-620.
92. Montigiani, S., Falugi, F., Scarselli, M., Finco, O. et al., Infect. Immun. 2002, 70, 368-379.
93. Klade, C. S, Curr. Opin. Mol. Ther. 2002, 4, 216-223.
94. Wang, J. F., Caugant, D. A., Li, X., Hu, X. et al., Infect. Immun. 1992, 60, 5267-5282.
95. Achtman, M., Kusecek, B., Morelli, G., Eickmann, K. et al., J. Infect. Dis. 1992, 165, 53-68.
96. Zhu, P., van der Ende, A., Falush, D., Brieske, N. et al., Proc. Natl. Acad. Sci. USA 2001, 98, 5234-5239.
97. Achtman, M., Mol. Microbiol. 1994, 11, 15-22.