-
1
-
-
0034726874
-
A vertebrate globin expressed in the brain
-
Burmester, T., Weich, B., Reinhardt, S., and Hankeln, T. (2000) A vertebrate globin expressed in the brain. Nature 407, 520-523.
-
(2000)
Nature
, vol.407
, pp. 520-523
-
-
Burmester, T.1
Weich, B.2
Reinhardt, S.3
Hankeln, T.4
-
2
-
-
0035839641
-
Human neuroglobin, a hexacoordinate hemoglobin that reversibly binds oxygen
-
Trent III, J. T., Watts, R. A., and Hargrove, M. S. (2001) Human neuroglobin, a hexacoordinate hemoglobin that reversibly binds oxygen. J. Biol. Chem. 276, 30106-30110.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 30106-30110
-
-
Trent III, J.T.1
Watts, R.A.2
Hargrove, M.S.3
-
3
-
-
0037205447
-
A ubiquitously expressed human hexacoordinate hemoglobin
-
Trent, J. T. I., and Hargrove, M. S. (2002) A ubiquitously expressed human hexacoordinate hemoglobin. J. Biol. Chem. 277, 19538-19545.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 19538-19545
-
-
Trent, J.T.I.1
Hargrove, M.S.2
-
4
-
-
0036219963
-
Cytoglobin: A novel globin type ubiquitously expressed in vertebrate tissues
-
Burmester, T., Ebner, B., Weich, B., and Hankeln, T. (2002). Cytoglobin: a novel globin type ubiquitously expressed in vertebrate tissues. Mol. Biol. Evol. 19, 416-421.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 416-421
-
-
Burmester, T.1
Ebner, B.2
Weich, B.3
Hankeln, T.4
-
5
-
-
34547947230
-
-
SCOP: Structural Classification of Proteins, release 1.71, October 2006
-
SCOP: Structural Classification of Proteins, release 1.71, October 2006.
-
-
-
-
6
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
7
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
-
Lesk, A. M., and Chothia, C. (1980) How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol. 136, 225-230.
-
(1980)
J. Mol. Biol
, vol.136
, pp. 225-230
-
-
Lesk, A.M.1
Chothia, C.2
-
8
-
-
0023176681
-
Determinants of a protein fold. Unique features of the globin amino acid sequence
-
Bashford, D., Chothia, C., and Lesk, A. M. (1987) Determinants of a protein fold. Unique features of the globin amino acid sequence. J. Mol. Biol. 196, 199-216.
-
(1987)
J. Mol. Biol
, vol.196
, pp. 199-216
-
-
Bashford, D.1
Chothia, C.2
Lesk, A.M.3
-
9
-
-
20444476656
-
Structural divergence and distant relationships in proteins: Evolution of the globins
-
Lecomte, J. T. J., Vuletich, D. A., and Lesk, A. M. (2005) Structural divergence and distant relationships in proteins: evolution of the globins. Curr. Opin. Struct. Biol. 15, 290-301.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 290-301
-
-
Lecomte, J.T.J.1
Vuletich, D.A.2
Lesk, A.M.3
-
10
-
-
1042286374
-
Crystal structure of cytoglobin: The fourth globin type discovered in man displays heme hexa-coordination
-
de Sanctis, D., Dewilde, S., Pesce, A., Moens, L., Ascenzi, P., Hankeln, T., Burmester, T., and Bolognesi, M. (2004) Crystal structure of cytoglobin: the fourth globin type discovered in man displays heme hexa-coordination. J. Mol. Biol. 336, 917-927.
-
(2004)
J. Mol. Biol
, vol.336
, pp. 917-927
-
-
de Sanctis, D.1
Dewilde, S.2
Pesce, A.3
Moens, L.4
Ascenzi, P.5
Hankeln, T.6
Burmester, T.7
Bolognesi, M.8
-
11
-
-
2542450912
-
Structural basis of human cytoglobin for ligand binding
-
Sugimoto, H., Makino, M., Sawai, H., Kawada, N., Yoshizato, K., and Shiro, Y. (2004) Structural basis of human cytoglobin for ligand binding. J. Mol. Biol. 336, 873-885.
-
(2004)
J. Mol. Biol
, vol.336
, pp. 873-885
-
-
Sugimoto, H.1
Makino, M.2
Sawai, H.3
Kawada, N.4
Yoshizato, K.5
Shiro, Y.6
-
12
-
-
0036794255
-
Human neuroglobin: Crystals and preliminary X-ray diffraction analysis
-
Pesce, A., Nardini, M., Dewilde, S., Ascenzi, P., Burmester, T., Hankeln, T., Moens, L., and Bolognesi, M. (2002) Human neuroglobin: crystals and preliminary X-ray diffraction analysis. Acta Crystallogr. D 58, 1848-1850.
-
(2002)
Acta Crystallogr. D
, vol.58
, pp. 1848-1850
-
-
Pesce, A.1
Nardini, M.2
Dewilde, S.3
Ascenzi, P.4
Burmester, T.5
Hankeln, T.6
Moens, L.7
Bolognesi, M.8
-
13
-
-
0001266102
-
A three-dimensional model of the myoglobin molecule obtained by X-ray analysis
-
Kendrew, J. C., Bodo, G., Dintzis, H. M., Parrish, R. G., Wyckoff, H., and Phillips, D. C. (1958) A three-dimensional model of the myoglobin molecule obtained by X-ray analysis. Nature 181, 662-666.
-
(1958)
Nature
, vol.181
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
Wyckoff, H.5
Phillips, D.C.6
-
14
-
-
36949066642
-
Structure of haemoglobin. A three-dimensional Fourier analysis at 5.5 A resolution, obtained by x-ray analysis
-
Perutz, M. F., Rossman, M. G., Cullis, A. F., Muirhead, H., Will, G., and North, A. C. T. (1960) Structure of haemoglobin. A three-dimensional Fourier analysis at 5.5 A resolution, obtained by x-ray analysis. Nature 185, 416-422.
-
(1960)
Nature
, vol.185
, pp. 416-422
-
-
Perutz, M.F.1
Rossman, M.G.2
Cullis, A.F.3
Muirhead, H.4
Will, G.5
North, A.C.T.6
-
15
-
-
0014958182
-
Stereochemistry of cooperative effects in haemoglobin
-
Perutz, M. F. (1970) Stereochemistry of cooperative effects in haemoglobin. Nature 228, 726-739.
-
(1970)
Nature
, vol.228
, pp. 726-739
-
-
Perutz, M.F.1
-
17
-
-
0003606822
-
-
Benjamin/Cummings, Menlo Park, CA
-
Dickerson, R. E., and Geis, I. (1983) Hemoglobin: Structure, Function, Evolution and Pathology, Benjamin/Cummings, Menlo Park, CA.
-
(1983)
Hemoglobin: Structure, Function, Evolution and Pathology
-
-
Dickerson, R.E.1
Geis, I.2
-
18
-
-
0012231458
-
Neuroglobin and cytoglobin
-
Pesce, A., Bolognesi, M., Bocedi, A., Ascenzi, P., Dewilde, S., Moens, L., Hankeln, T., and Burmester, T. (2002) Neuroglobin and cytoglobin. EMBO reports 3, 1146-1151.
-
(2002)
EMBO reports
, vol.3
, pp. 1146-1151
-
-
Pesce, A.1
Bolognesi, M.2
Bocedi, A.3
Ascenzi, P.4
Dewilde, S.5
Moens, L.6
Hankeln, T.7
Burmester, T.8
-
19
-
-
2642546072
-
Interspecies comparison of neuroglobin, cytoglobin and myoglobin: Sequence evolution and candidate regulatory elements
-
Wystub, S., Ebner, B., Fuchs, C., Weich, B., Burmester, T., and Hankeln, T. (2004) Interspecies comparison of neuroglobin, cytoglobin and myoglobin: sequence evolution and candidate regulatory elements. Cytogenet. Genome Res. 105, 65-78.
-
(2004)
Cytogenet. Genome Res
, vol.105
, pp. 65-78
-
-
Wystub, S.1
Ebner, B.2
Fuchs, C.3
Weich, B.4
Burmester, T.5
Hankeln, T.6
-
20
-
-
17144408393
-
Structure-function relationships in the growing hexa-coordinate hemoglobin sub-family
-
de Sanctis, D., A., P., Nardini, M., Bolognesi, M., Bocedi, A., and Ascenzi, P. (2004) Structure-function relationships in the growing hexa-coordinate hemoglobin sub-family. IUBMB Life 56, 643-651.
-
(2004)
IUBMB Life
, vol.56
, pp. 643-651
-
-
de Sanctis, D.A.P.1
Nardini, M.2
Bolognesi, M.3
Bocedi, A.4
Ascenzi, P.5
-
21
-
-
17144382480
-
Reversible hexa- to penta-coordination of the heme Fe atom modulates ligand binding properties of neuroglobin and cytoglobin
-
Pesce, A., de Sanctis, D., Nardini, M., Dewilde, S., Moens, L., Hankeln, T., Burmester, T., Ascenzi, P., and Bolognesi, M. (2004) Reversible hexa- to penta-coordination of the heme Fe atom modulates ligand binding properties of neuroglobin and cytoglobin. IUBMB Life 56, 657-664.
-
(2004)
IUBMB Life
, vol.56
, pp. 657-664
-
-
Pesce, A.1
de Sanctis, D.2
Nardini, M.3
Dewilde, S.4
Moens, L.5
Hankeln, T.6
Burmester, T.7
Ascenzi, P.8
Bolognesi, M.9
-
22
-
-
10444267310
-
Neuroglobin and cytoglobin in search of their role in the vertebrate globin family
-
Hankeln, T., Ebner, B., Fuchs, C., Gerlach, F., Haberkamp, M., Laufs, T. L., Roesner, A., Schmidt, M., Weich, B., Wystub, S., Saaler-Reinhardt, S., Reuss, S., Bolognesi, M., de Sanctis, D., Marden, M., Kiger, L., Moens, L., Dewilde, S., Nevo, E., Avivi, A., Weber, R. C., Fago, A., and Burmester, T. (2005) Neuroglobin and cytoglobin in search of their role in the vertebrate globin family. J. Inorg. Biochem. 99, 110-119.
-
(2005)
J. Inorg. Biochem
, vol.99
, pp. 110-119
-
-
Hankeln, T.1
Ebner, B.2
Fuchs, C.3
Gerlach, F.4
Haberkamp, M.5
Laufs, T.L.6
Roesner, A.7
Schmidt, M.8
Weich, B.9
Wystub, S.10
Saaler-Reinhardt, S.11
Reuss, S.12
Bolognesi, M.13
de Sanctis, D.14
Marden, M.15
Kiger, L.16
Moens, L.17
Dewilde, S.18
Nevo, E.19
Avivi, A.20
Weber, R.C.21
Fago, A.22
Burmester, T.23
more..
-
23
-
-
0033061632
-
Molecular dynamics of human methemoglobin: The transmission of conformational information between subunits in an alpha beta dimer
-
Ramadas, N., and Rifkind, J. M. (1999) Molecular dynamics of human methemoglobin: the transmission of conformational information between subunits in an alpha beta dimer. Biophys. J. 76, 1796-1811.
-
(1999)
Biophys. J
, vol.76
, pp. 1796-1811
-
-
Ramadas, N.1
Rifkind, J.M.2
-
24
-
-
0037066257
-
Myoglobin, a paradygm in the study of protein dynamics
-
Parak, F. G., and Nienhaus, G. U. (2002) Myoglobin, a paradygm in the study of protein dynamics. Chem. Phys. Chem. 3, 249-254.
-
(2002)
Chem. Phys. Chem
, vol.3
, pp. 249-254
-
-
Parak, F.G.1
Nienhaus, G.U.2
-
25
-
-
0026076090
-
Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations
-
Ichiye, T., and Karplus, M. (1991) Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations. Proteins: Structure, Function, and Genetics 11, 205-217.
-
(1991)
Proteins: Structure, Function, and Genetics
, vol.11
, pp. 205-217
-
-
Ichiye, T.1
Karplus, M.2
-
26
-
-
0028331255
-
Normal mode analysis of protein dynamics
-
Case, D. A. (1994). Normal mode analysis of protein dynamics. Curr. Opin. Struct. Biol. 4, 285-290.
-
(1994)
Curr. Opin. Struct. Biol
, vol.4
, pp. 285-290
-
-
Case, D.A.1
-
27
-
-
0000991642
-
Harmonic dynamics of proteins: Normal modes and fluctuations in bovine pancreatic trypsin inhibitor
-
Brooks III, B., and Karplus, M. (1983) Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. Proc. Natl Acad. Sci. USA 80, 6571-6575.
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 6571-6575
-
-
Brooks III, B.1
Karplus, M.2
-
28
-
-
0020488742
-
Collective variable description of small-amplitude conformational fluctuations in a globular protein
-
Noguti, T., and Go, N. (1982). Collective variable description of small-amplitude conformational fluctuations in a globular protein. Nature 296, 776-778.
-
(1982)
Nature
, vol.296
, pp. 776-778
-
-
Noguti, T.1
Go, N.2
-
29
-
-
0033557178
-
Analysis of domain motions in large proteins
-
Hinsen, K., Thomas, A., and Field, M. J. (1999) Analysis of domain motions in large proteins. Proteins 34, 369-382.
-
(1999)
Proteins
, vol.34
, pp. 369-382
-
-
Hinsen, K.1
Thomas, A.2
Field, M.J.3
-
30
-
-
0036721233
-
Normal mode analysis of macro-molecular motions in a database framework: Developing mode concentrations as a useful statistic
-
Krebs, W. G., Alexandrov, A., Wilson, C. A., Echols, N., Yu, H., and Gerstein, M. (2002) Normal mode analysis of macro-molecular motions in a database framework: Developing mode concentrations as a useful statistic. Proteins 48, 682-695.
-
(2002)
Proteins
, vol.48
, pp. 682-695
-
-
Krebs, W.G.1
Alexandrov, A.2
Wilson, C.A.3
Echols, N.4
Yu, H.5
Gerstein, M.6
-
31
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
Tama, F., and Sanejouand, Y. H. (2001) Conformational change of proteins arising from normal mode calculations. Protein Eng. 14, 1-6.
-
(2001)
Protein Eng
, vol.14
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.H.2
-
32
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) The Protein Data Bank. Nucleic Acids Research 28, 235-242.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
33
-
-
0021027685
-
Structure of human oxyhaemoglobin at 2.1 A resolution
-
Shaanan, B. (1983). Structure of human oxyhaemoglobin at 2.1 A resolution. J. Mol. Biol. 171, 31-59.
-
(1983)
J. Mol. Biol
, vol.171
, pp. 31-59
-
-
Shaanan, B.1
-
34
-
-
0033574735
-
A steric mechanism for inhibition of CO binding to heme proteins
-
Kachalova, G. S., Popov, A. N., and Bartunik, H. D. (1999) A steric mechanism for inhibition of CO binding to heme proteins. Science 284, 473-476.
-
(1999)
Science
, vol.284
, pp. 473-476
-
-
Kachalova, G.S.1
Popov, A.N.2
Bartunik, H.D.3
-
35
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Higgins, D., Thompson, J., Gibson, T., Thompson, J.D., Higgins, D.G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Higgins, D.1
Thompson, J.2
Gibson, T.3
Thompson, J.D.4
Higgins, D.G.5
Gibson, T.J.6
-
36
-
-
0043123208
-
ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins
-
Gouet, P., Robert, X., and Courcelle, E. (2003) ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucl. Acids Res. 31, 3320-3323.
-
(2003)
Nucl. Acids Res
, vol.31
, pp. 3320-3323
-
-
Gouet, P.1
Robert, X.2
Courcelle, E.3
-
37
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) CHARMM: A program for macromolecular energy, minimization and dynamics calculations. J. Comp. Chem. 4, 187-217.
-
(1983)
J. Comp. Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
38
-
-
0000885331
-
Harmonic analysis of large systems. I. Methodology
-
Brooks III, B., Dusanka, J., and Karplus, M. (1995) Harmonic analysis of large systems. I. Methodology. J. Comp. Chem. 16, 1522-1542.
-
(1995)
J. Comp. Chem
, vol.16
, pp. 1522-1542
-
-
Brooks III, B.1
Dusanka, J.2
Karplus, M.3
-
40
-
-
0033588067
-
Non-functional conserved residues in globins and their possible role as a folding nucleus
-
Ptitsyn, O. B., and Ting, K. L. (1999) Non-functional conserved residues in globins and their possible role as a folding nucleus. J. Mol. Biol. 291, 671-682.
-
(1999)
J. Mol. Biol
, vol.291
, pp. 671-682
-
-
Ptitsyn, O.B.1
Ting, K.L.2
-
41
-
-
0028116101
-
Quantification of tertiary structural conservation despite primary sequence drift in the globin fold
-
Aronson, H., Royer, W. E., and Hendrickson, W. A. (1994) Quantification of tertiary structural conservation despite primary sequence drift in the globin fold. Prot. Sci. 3, 1706-1711.
-
(1994)
Prot. Sci
, vol.3
, pp. 1706-1711
-
-
Aronson, H.1
Royer, W.E.2
Hendrickson, W.A.3
|