메뉴 건너뛰기




Volumn 23, Issue 13, 2007, Pages

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

EID: 34547840233     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm192     Document Type: Conference Paper
Times cited : (27)

References (26)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 0035260692 scopus 로고    scopus 로고
    • Genetic dissection of phenotypic diversity in farm animals
    • Andersson, L. (2001) Genetic dissection of phenotypic diversity in farm animals. Nat. Rev. Genet., 2, 130-138.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 130-138
    • Andersson, L.1
  • 3
    • 1542350622 scopus 로고    scopus 로고
    • Domestic-animal genomics: Deciphering the genetics of complex traits
    • Andersson, L. and Georges, M. (2004) Domestic-animal genomics: deciphering the genetics of complex traits. Nat. Rev. Genet., 5 202 212.
    • (2004) Nat. Rev. Genet , vol.5 , pp. 202-212
    • Andersson, L.1    Georges, M.2
  • 4
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. and Green, P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res., 8, 186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 5
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B. et al. (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res., 8, 175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1
  • 6
    • 0036017145 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in porcine expressed genes
    • Fahrenkrug, S.C. et al. (2002) Single nucleotide polymorphism (SNP) discovery in porcine expressed genes. Anim Genet., 33, 186-195.
    • (2002) Anim Genet , vol.33 , pp. 186-195
    • Fahrenkrug, S.C.1
  • 7
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon, D. et al. (1998) Consed: A graphical tool for sequence finishing. Genome Res., 8, 195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1
  • 8
    • 34547831828 scopus 로고    scopus 로고
    • Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    • Gorodkin, J. et al. (2007) Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Genome Biol. 8, R45.
    • (2007) Genome Biol , vol.8
    • Gorodkin, J.1
  • 9
    • 3543078755 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms associated with rat expressed sequences
    • Guryev, V. et al. (2004) Single nucleotide polymorphisms associated with rat expressed sequences. Genome Res., 14, 1438-1443.
    • (2004) Genome Res , vol.14 , pp. 1438-1443
    • Guryev, V.1
  • 10
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 11
    • 13844281341 scopus 로고    scopus 로고
    • Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
    • Jorgensen, F.G. et al. (2005) Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. BMC Biol., 3, 2.
    • (2005) BMC Biol , vol.3 , pp. 2
    • Jorgensen, F.G.1
  • 12
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • Jurka, J. (2000) Repbase update: A database and an electronic journal of repetitive elements. Trends Genet., 16, 418-420.
    • (2000) Trends Genet , vol.16 , pp. 418-420
    • Jurka, J.1
  • 13
    • 0033006003 scopus 로고    scopus 로고
    • Allelic discrimination using fluorogenic probes and the 5′ nuclease assay
    • Livak, K.J. (1999) Allelic discrimination using fluorogenic probes and the 5′ nuclease assay. Genet. Anal., 14, 143-149.
    • (1999) Genet. Anal , vol.14 , pp. 143-149
    • Livak, K.J.1
  • 14
    • 0030872838 scopus 로고    scopus 로고
    • PolyPhred: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing
    • Nickerson, D.A. et al. (1997) PolyPhred: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res., 25, 2745-2751.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2745-2751
    • Nickerson, D.A.1
  • 15
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • Ng, P.C. and Henikoff, S. (2001) Predicting deleterious amino acid substitutions. Genome Res., 11, 863-874.
    • (2001) Genome Res , vol.11 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 16
    • 0032706623 scopus 로고    scopus 로고
    • A general approach to single-nueleotide polymorphism discovery
    • Marth, G.T. et al. (1999) A general approach to single-nueleotide polymorphism discovery. Nat. Genet., 23, 452-456.
    • (1999) Nat. Genet , vol.23 , pp. 452-456
    • Marth, G.T.1
  • 17
    • 0033015046 scopus 로고    scopus 로고
    • Mining SNPs from EST databases
    • Picoult-Newberg, L. et al. (1999) Mining SNPs from EST databases. Genome Res., 9, 167-174.
    • (1999) Genome Res , vol.9 , pp. 167-174
    • Picoult-Newberg, L.1
  • 18
    • 0036713510 scopus 로고    scopus 로고
    • Human non-synonymous SNPs: Server and survey
    • Ramensky, V. et al. (2002) Human non-synonymous SNPs: Server and survey. Nucleic Acids Res., 30, 3894-3900.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3894-3900
    • Ramensky, V.1
  • 19
    • 0035865322 scopus 로고    scopus 로고
    • A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
    • Sachidanandam, R. et al. (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature, 409, 928-933.
    • (2001) Nature , vol.409 , pp. 928-933
    • Sachidanandam, R.1
  • 20
    • 0035173378 scopus 로고    scopus 로고
    • dbSNP: The NCBI database of genetic variation
    • Sherry, S.T. et al. (2001) dbSNP: The NCBI database of genetic variation. Nucleic Acids Res., 29, 308-311.
    • (2001) Nucleic Acids Res , vol.29 , pp. 308-311
    • Sherry, S.T.1
  • 21
    • 0347755533 scopus 로고    scopus 로고
    • PEDE (Pig EST Data Explorer): Construction of a database for ESTs derived from porcine full-length eDNA libraries
    • Uenishi, H. et al. (2004) PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length eDNA libraries. Nucleic Acids Res., 32, D484-D488.
    • (2004) Nucleic Acids Res , vol.32
    • Uenishi, H.1
  • 22
    • 0035983148 scopus 로고    scopus 로고
    • A review on SNP and other types of molecular markers and their use in animal genetics
    • Vignal, A. et al. (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genet. Sel. Evol. 34, 275-305.
    • (2002) Genet. Sel. Evol , vol.34 , pp. 275-305
    • Vignal, A.1
  • 23
    • 23444460778 scopus 로고    scopus 로고
    • Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
    • Wernersson, R. et al. (2005) Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics 6, 70.
    • (2005) BMC Genomics , vol.6 , pp. 70
    • Wernersson, R.1
  • 24
    • 0037452982 scopus 로고    scopus 로고
    • Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse
    • Wiltshire, T. et al. (2003) Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proc. Natl Acad. Sci., 100, 3380-3385.
    • (2003) Proc. Natl Acad. Sci , vol.100 , pp. 3380-3385
    • Wiltshire, T.1
  • 25
    • 10644271562 scopus 로고    scopus 로고
    • International Chicken Polymorphism Map Consortium. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
    • Wong, G.K. et al. (2004) International Chicken Polymorphism Map Consortium. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature, 432, 717-722.
    • (2004) Nature , vol.432 , pp. 717-722
    • Wong, G.K.1
  • 26
    • 10744225849 scopus 로고    scopus 로고
    • A SNP map of the rat genome generated from cDNA sequences
    • Zimdahl, H. et al. (2004) A SNP map of the rat genome generated from cDNA sequences. Science, 303, 807.
    • (2004) Science , vol.303 , pp. 807
    • Zimdahl, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.