Single nucleotide polymorphism (SNP) discovery in porcine expressed genes

Animal Genetics

Volumn 33, Issue 3, 2002, Pages 186-195

  Fahrenkrug, S C ^a   Freking, B A ^a   Smith, T P L ^a   Rohrer, G A ^a   Keele, J W ^a  

^a U S MEAT ANIMAL RESEARCH CENTER   (United States)

Author keywords

EST; Porcine; SNP; Swine

Indexed keywords

ANIMALIA; EUKARYOTA; MAMMALIA; SUIDAE; SUS SCROFA;

PRIMER DNA;

ANIMAL; ARTICLE; EXPRESSED SEQUENCE TAG; GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; SWINE;

ANIMALS; DNA PRIMERS; EXPRESSED SEQUENCE TAGS; POLYMORPHISM, SINGLE NUCLEOTIDE; SWINE;

EID: 0036017145     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2052.2002.00846.x     Document Type: Article

References (26)

1. Basic local alignment search tool
2. An SNP map of the human genome generated by reduced representation shotgun sequencing
3. High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
4. Population genetics-making sense out of sequence
5. A physical map of 30,000 human genes
6. Base-calling of automated sequencer traces using phred. II. Error probabilities
7. Base-calling of automated sequencer traces using phred. I. Accuracy assessment
8. Porcine gene-discovery by normalized cDNA-library sequencing and cluster assembly
9. CONSED: A graphical tool for sequence finishing
10. Initial sequencing and analysis of the human genome
11. Efficient selection of 3′-terminal exons from vertebrate DNA
12. Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse
13. Intron phase correlations and the evolution of the intron/exon structure of genes
14. An SNP map of human chromosome 22
15. POLYPHRED: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing
16. DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene
17. Automating the identification of DNA variations using quality-based fluorescence re-sequencing: Analysis of the human mitochondrial genome
18. A microsatellite linkage map of the porcine genome
19. Primer3 on the WWW for general users and for biologist programmers
20. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
21. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle
22. Mapping of expressed sequence tags from a porcine early embryonic cDNA library
23. Evolutionary relationship of DNA sequences in finite populations
24. The sequence of the human genome
25. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome