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Volumn 129, Issue 31, 2007, Pages 9713-9720

Cation-modulated electron-transfer channel: H-atom transfer vs proton-coupled electron transfer with a variable electron-transfer channel in acylamide units

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; METAL IONS; POSITIVE IONS; PROTONS;

EID: 34547816753     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja071194m     Document Type: Article
Times cited : (30)

References (84)
  • 1
    • 34547774332 scopus 로고    scopus 로고
    • Biological residues containing acylamide units include peptide bonds, asparagine, glutamine, guanine, thymine/uracil, and flavin. The acylamide unit has two tautomers: cis-H and trans-H, as in peptide bonds, asparagine and glutamine, etc., but some only have a cis-H conformer, as in guanine, thymine/uracil, and flavin. In many cases, the cis-H tautomers are located near protein active sites and may play an important role in the functioning of enzymes (refs 2-4).
    • Biological residues containing acylamide units include peptide bonds, asparagine, glutamine, guanine, thymine/uracil, and flavin. The acylamide unit has two tautomers: cis-H and trans-H, as in peptide bonds, asparagine and glutamine, etc., but some only have a cis-H conformer, as in guanine, thymine/uracil, and flavin. In many cases, the cis-H tautomers are located near protein active sites and may play an important role in the functioning of enzymes (refs 2-4).
  • 24
    • 0037747461 scopus 로고    scopus 로고
    • 60 may be modulated by changing the metal ions. See also (a) Fukuzumi, S. Org. Biomol. Chem. 2003, 1, 609-620, and references therein.
    • 60 may be modulated by changing the metal ions. See also (a) Fukuzumi, S. Org. Biomol. Chem. 2003, 1, 609-620, and references therein.
  • 40
  • 64
    • 34547790991 scopus 로고    scopus 로고
    • Glendening, E. D, Badenhoop, J. K, Reed, A. E, Carpenter, J. E, Bohmann, J. A, Weinhold, F. NBO, version 5.0; Theoretical Chemistry Institute, University of Wisconsin: Madison, WI, 2000
    • (b) Glendening, E. D.; Badenhoop, J. K.; Reed, A. E.; Carpenter, J. E.; Bohmann, J. A.; Weinhold, F. NBO, version 5.0; Theoretical Chemistry Institute, University of Wisconsin: Madison, WI, 2000.
  • 70
    • 34547809070 scopus 로고    scopus 로고
    • Gaussian, Inc, Wallingford, CT
    • Frisch, M. J.; et al. Gaussian 03, Revision C.02; Gaussian, Inc.: Wallingford, CT, 2004.
    • (2004) Gaussian 03, Revision , Issue.C.02
    • Frisch, M.J.1
  • 80
    • 34547735176 scopus 로고    scopus 로고
    • We also estimated the calculational errors for these geometrical parameters and energy quantities by comparing them for FFts at different levels of theory (see Table S4, The deviations among several methods are within 0.05 Å (O⋯O, 0.01 Å (N⋯H⋯N, 0.01 Å (N⋯H, 0.5° (ANHN) for geometrical parameters, and 1.3 kcal/mol (ΔEa, 1.5 kcal/mol (ΔE b, respectively. The deviations of ρN and ρo are almost equal to zero. Together with the calculated geometrical parameters for F Table S3, all these indicate that B3LYP/6-311++G** can yield the reliable results
    • o are almost equal to zero. Together with the calculated geometrical parameters for F (Table S3), all these indicate that B3LYP/6-311++G** can yield the reliable results.
  • 81
    • 34547728364 scopus 로고    scopus 로고
    • • radical by intramolecular O→N electron transfer, favoring the formation of the cyclic coupling mode with formamide, resulting in a normal HN-H⋯NH two-electron H-bond and a O⋯O three-electron bond.
    • • radical by intramolecular O→N electron transfer, favoring the formation of the cyclic coupling mode with formamide, resulting in a normal HN-H⋯NH two-electron H-bond and a O⋯O three-electron bond.
  • 82
    • 34547745638 scopus 로고    scopus 로고
    • At the transition state FF,ts, the HOMO is a two-electron π*-antibonding orbital, while the HOMO-2 is a two-electron π-bonding orbital. Both distribute over the whole molecular backbone and may be viewed as linear combinations of two local π orbitals located on two molecular fragments, respectively. The net contribution of their combination to the bonding between two molecular fragments is zero
    • ts, the HOMO is a two-electron π*-antibonding orbital, while the HOMO-2 is a two-electron π-bonding orbital. Both distribute over the whole molecular backbone and may be viewed as linear combinations of two local π orbitals located on two molecular fragments, respectively. The net contribution of their combination to the bonding between two molecular fragments is zero.
  • 83
    • 34547765060 scopus 로고    scopus 로고
    • We examined the thermodynamics associating with the ligand exchange process: Mz+(H20)n, FF, FF-Mz+(H2O)n-2, 2H2O. The energy changes for three selected hydrated metal ions are exothermic: -18.0 (Ca2, H2O)6, 2.1 (Ca2+(H 2O)7, and -18.5 (Mg2+(H2O) 6) kcal/mol, respectively
    • 6) kcal/mol, respectively.
  • 84
    • 34547785219 scopus 로고    scopus 로고
    • Although the oligohydrates of the metal ions are not predominant species, we can use them to model the hydrated metal ions with large binding energies or Lewis acidity. The binding of these kinds of cations with FF favor HAT. To verify this conclusion, we also examined the effect of a trivalent cation Sc3+ hydrate, FF-Sc3+(H2O)4 (FF+Sc3+(H20)6-FF-Sc3, H2O)4+2H2O) on the FF PT/ET mechanism. Results (at the transition state, ρN3+N10, 0.88, ρo2+o9, 0.12) indicate that FF-Sc3+(H2O)4 obeys the HAT mechanism
    • 4 obeys the HAT mechanism.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.