-
1
-
-
85139555746
-
Parallel genetic algorithm for performance-driven sequence alignment
-
L. Spector, E. D. Goodman, A. Wu, et al. eds.. Morgan Kaufmann, San Francisco, California, USA, 7-11 Jul
-
L. A. Anbarasu, V. Sundararajan, and N. Narayanasamy. Parallel genetic algorithm for performance-driven sequence alignment. In L. Spector, E. D. Goodman, A. Wu, et al., eds., Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2001), p. 1015. Morgan Kaufmann, San Francisco, California, USA, 7-11 Jul. 2001.
-
(2001)
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2001)
, pp. 1015
-
-
Anbarasu, L.A.1
Sundararajan, V.2
Narayanasamy, N.3
-
2
-
-
0037787816
-
The PRINTS database: A resource for identification of protein families
-
Sep
-
T. K. Attwood. The PRINTS database: A resource for identification of protein families. Brief Bioinform, 3 (3): 252-63, Sep 2002.
-
(2002)
Brief Bioinform
, vol.3
, Issue.3
, pp. 252-263
-
-
Attwood, T.K.1
-
3
-
-
35248848879
-
Structural emergence with order independent representations
-
E. C.-P. et al. ed. Springer-Verlag
-
R. M. A. Azad and C. Ryan. Structural emergence with order independent representations. In E. C.-P. et al., ed., Proceedings of the 2003 Genetic and Evolutionary Computation Conference, GECCO 2003, vol. 2724 of Lecture Notes in Computer Science, pp. 1626-1638. Springer-Verlag, 2003.
-
(2003)
Proceedings of the 2003 Genetic and Evolutionary Computation Conference, GECCO 2003, vol. 2724 of Lecture Notes in Computer Science
, pp. 1626-1638
-
-
Azad, R.M.A.1
Ryan, C.2
-
4
-
-
4043156577
-
Searching for statistically significant regulatory modules
-
Oct
-
T. L. Bailey and W. S. Noble. Searching for statistically significant regulatory modules. Bioinformatics, 19 Suppl 2: II16-II25, Oct 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. II16-II25
-
-
Bailey, T.L.1
Noble, W.S.2
-
6
-
-
9144257886
-
The Pfam protein families database
-
Jan (Database issue)
-
A. Bateman, L. Coin, R. Durbin, et al. The Pfam protein families database. Nucleic Acids Res, 32 (Database issue): D138-41, Jan 2004.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D138-D141
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
-
7
-
-
0033954256
-
The protein data bank
-
H. M. Berman, J. Westbrook, Z. Feng, et al. The protein data bank. Nucleic Acids Research, 28: 235-242, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
-
8
-
-
13444292042
-
Motif-based protein sequence classification using neural networks
-
February
-
K. Blekas, D. I. Fotiadis, and A. Likas. Motif-based protein sequence classification using neural networks. Journal of Computational Biology, 12 (1): 64-82, February 2005.
-
(2005)
Journal of Computational Biology
, vol.12
, Issue.1
, pp. 64-82
-
-
Blekas, K.1
Fotiadis, D.I.2
Likas, A.3
-
9
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Jan
-
B. Boeckmann, A. Bairoch, R. Apweiler, et al. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res, 31 (1): 365-70, Jan 2003.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
-
10
-
-
0031878759
-
Approaches to the automatic discovery of patterns in biosequences
-
A. Brazma, I. Jonassen, I. Eidhammer, et al. Approaches to the automatic discovery of patterns in biosequences. Journal of Computational Biology, 5 (2): 277-304, 1998.
-
(1998)
Journal of Computational Biology
, vol.5
, Issue.2
, pp. 277-304
-
-
Brazma, A.1
Jonassen, I.2
Eidhammer, I.3
-
11
-
-
13444305296
-
The ProDom database of protein domain families: more emphasis on 3D
-
Jan, Database Issue: D212-5
-
C. Bru, E. Courcelle, S. Carrre, et al. The ProDom database of protein domain families: more emphasis on 3D. Nucleic Acids Res, 33 Database Issue: D212-5, Jan 2005.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Bru, C.1
Courcelle, E.2
Carrre, S.3
-
12
-
-
0033671507
-
Evolutionary computation techniques for multiple sequence alignment
-
IEEE Press, La Jolla Marriott Hotel La Jolla, California, USA, 6-9 Jul.
-
L. Cai, D. Juedes, and E. Liakhovitch. Evolutionary computation techniques for multiple sequence alignment. In Proceedings of the 2000 Congress on Evolutionary Computation CEC00, pp. 829-835. IEEE Press, La Jolla Marriott Hotel La Jolla, California, USA, 6-9 Jul. 2000.
-
(2000)
Proceedings of the 2000 Congress on Evolutionary Computation CEC00
, pp. 829-835
-
-
Cai, L.1
Juedes, D.2
Liakhovitch, E.3
-
13
-
-
0037614067
-
Alignment of protein structures with a memetic evolutionary algorithm
-
W. B. Langdon, E. Cantú-Paz, K. Mathias, et al. eds. Morgan Kaufmann Publishers, New York, 9-13 Jul
-
R. Carr, W. Hart, N. Krasnogor, et al. Alignment of protein structures with a memetic evolutionary algorithm. In W. B. Langdon, E. Cantú-Paz, K. Mathias, et al., eds., GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, pp. 1027-1034. Morgan Kaufmann Publishers, New York, 9-13 Jul. 2002.
-
(2002)
GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference
, pp. 1027-1034
-
-
Carr, R.1
Hart, W.2
Krasnogor, N.3
-
14
-
-
3543099694
-
Particle swarm optimisation for protein motif discovery
-
B. C. H. Chang, A. Ratnaweera, H. Halgamuge, et al. Particle swarm optimisation for protein motif discovery. Genetic Programming and Evolvable Machines, 5 (2): 203-214, 2004.
-
(2004)
Genetic Programming and Evolvable Machines
, vol.5
, Issue.2
, pp. 203-214
-
-
Chang, B.C.H.1
Ratnaweera, A.2
Halgamuge, H.3
-
16
-
-
0030676559
-
Optimization of HMM by a genetic algorithm
-
C. Chau, S. Kwong, C. Diu, et al. Optimization of HMM by a genetic algorithm. In Acoustics, Speech, and Signal Processing, 1997. ICASSP-97., 1997 IEEE International Conference on, vol. 3, pp. 1727-1730. 1997.
-
(1997)
Acoustics, Speech, and Signal Processing, 1997. ICASSP-97., 1997 IEEE International Conference on
, vol.3
, pp. 1727-1730
-
-
Chau, C.1
Kwong, S.2
Diu, C.3
-
17
-
-
84901397420
-
Multiple sequence alignment using evolutionary programming
-
P. J. Angeline, Z. Michalewicz, M. Schoenauer, et al. eds. IEEE Press, Mayflower Hotel, Washington D. C., USA, 6-9 Jul
-
K. Chellapilla and G. B. Fogel. Multiple sequence alignment using evolutionary programming. In P. J. Angeline, Z. Michalewicz, M. Schoenauer, et al., eds., Proceedings of the Congress on Evolutionary Computation, vol. 1, pp. 445-452. IEEE Press, Mayflower Hotel, Washington D. C., USA, 6-9 Jul. 1999.
-
(1999)
Proceedings of the Congress on Evolutionary Computation
, vol.1
, pp. 445-452
-
-
Chellapilla, K.1
Fogel, G.B.2
-
19
-
-
0025316459
-
The geometry of evolution
-
M. Conrad. The geometry of evolution. BioSystems, 24: 61-81, 1990.
-
(1990)
BioSystems
, vol.24
, pp. 61-81
-
-
Conrad, M.1
-
20
-
-
0034869173
-
Evolving core promoter signal motifs
-
IEEE Press, COEX, World Trade Center, 159 Samseong-dong, Gangnam-gu, Seoul, Korea, 27-30 May
-
D. Corne, A. Meade, and R. Sibly. Evolving core promoter signal motifs. In Proceedings of the 2001 Congress on Evolutionary Computation CEC2001, pp. 1162-1169. IEEE Press, COEX, World Trade Center, 159 Samseong-dong, Gangnam-gu, Seoul, Korea, 27-30 May 2001.
-
(2001)
Proceedings of the 2001 Congress on Evolutionary Computation CEC2001
, pp. 1162-1169
-
-
Corne, D.1
Meade, A.2
Sibly, R.3
-
22
-
-
0036084361
-
The PROSITE database, its status in 2002
-
L. Falquet, M. Pagni, P. Bucher, et al. The PROSITE database, its status in 2002. Nucleic Acids Research, 30: 235-238, 2002.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 235-238
-
-
Falquet, L.1
Pagni, M.2
Bucher, P.3
-
23
-
-
0034777594
-
Detection of cis-element clusters in higher eukaryotic DNA
-
Oct
-
M. Frith, U. Hansen, and Z. Weng. Detection of cis-element clusters in higher eukaryotic DNA. Bioinformatics, 17 (10): 878-89, Oct 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.10
, pp. 878-889
-
-
Frith, M.1
Hansen, U.2
Weng, Z.3
-
24
-
-
0001907722
-
Rapid accurate optimization of difficult problems using fast messy genetic algorithms
-
S. Forrest, ed. Morgan Kaufmann
-
D. E. Goldberg, K. Deb, H. Kargupta, et al. Rapid accurate optimization of difficult problems using fast messy genetic algorithms. In S. Forrest, ed., Proceedings of The Fifth International Conference On Genetic Algorithms. Morgan Kaufmann, 1993.
-
(1993)
Proceedings of The Fifth International Conference On Genetic Algorithms
-
-
Goldberg, D.E.1
Deb, K.2
Kargupta, H.3
-
25
-
-
20444378669
-
Multiple protein sequence comparison by genetic algorithms
-
S. K. Rogers, D. B. Fogel, J. C. Bezdek, et al. eds
-
R. R. Gonzalez, C. M. Izquierdo, and J. Seijas. Multiple protein sequence comparison by genetic algorithms. In S. K. Rogers, D. B. Fogel, J. C. Bezdek, et al., eds., Proceedings of SPIE, vol. 3390 of Applications and Science of Computational Intelligence, pp. 99-102. 1998.
-
(1998)
Proceedings of SPIE, Vol. 3390 of Applications and Science of Computational Intelligence
, pp. 99-102
-
-
Gonzalez, R.R.1
Izquierdo, C.M.2
Seijas, J.3
-
26
-
-
0041594045
-
Evolutionary computation for the interpretation of metabolome data
-
G. G. Harrigan and R. Goodacre, eds. Kluwer, Boston
-
R. Goodacre and D. B. Kell. Evolutionary computation for the interpretation of metabolome data. In G. G. Harrigan and R. Goodacre, eds., Metabolic profiling: its role in biomarker discovery and gene function analysis, pp. 239-256. Kluwer, Boston, 2003.
-
(2003)
Metabolic profiling: its role in biomarker discovery and gene function analysis
, pp. 239-256
-
-
Goodacre, R.1
Kell, D.B.2
-
27
-
-
1842717540
-
Multiple sequence alignment by genetic algorithm
-
K. Hanada, T. Yokoyama, and T. Shimizu. Multiple sequence alignment by genetic algorithm. Genome Informatics, 11: 317-318, 2000.
-
(2000)
Genome Informatics
, vol.11
, pp. 317-318
-
-
Hanada, K.1
Yokoyama, T.2
Shimizu, T.3
-
28
-
-
0029210303
-
Predicting whether or not a nucleic acid sequence is an E. coli promoter region using genetic programming
-
IEEE Computer Society Press, Herndon, Virginia, USA, 29-31 May
-
S. Handley. Predicting whether or not a nucleic acid sequence is an E. coli promoter region using genetic programming. In Proceedings of the First International Symposium on Intelligence in Neural and Biological Systems INBS-95, pp. 122-127. IEEE Computer Society Press, Herndon, Virginia, USA, 29-31 May 1995.
-
(1995)
Proceedings of the First International Symposium on Intelligence in Neural and Biological Systems INBS-95
, pp. 122-127
-
-
Handley, S.1
-
29
-
-
35048847106
-
Evolving regular expression-based sequence classifiers for protein nuclear localisation
-
G. R. Raidl, S. Cagnoni, J. Branke, et al. eds. Springer Verlag, Coimbra, Portugal, 5-7 Apr
-
A. Heddad, M. Brameier, and M. MacCallum. Evolving regular expression-based sequence classifiers for protein nuclear localisation. In G. R. Raidl, S. Cagnoni, J. Branke, et al., eds., Applications of Evolutionary Computing, EvoWorkshops2004, vol. 3005 of LNCS, pp. 31-40. Springer Verlag, Coimbra, Portugal, 5-7 Apr. 2004.
-
(2004)
Applications of Evolutionary Computing, EvoWorkshops2004, Vol. 3005 of LNCS
, pp. 31-40
-
-
Heddad, A.1
Brameier, M.2
MacCallum, M.3
-
30
-
-
0032776495
-
Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations
-
Jun
-
S. Henikoff, J. Henikoff, and S. Pietrokovski. Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations. Bioinformatics, 15 (6): 471-9, Jun 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.6
, pp. 471-479
-
-
Henikoff, S.1
Henikoff, J.2
Pietrokovski, S.3
-
32
-
-
0012958459
-
Using genetic algorithms to solve multiple sequence alignments
-
D. Whitley, D. Goldberg, E. Cantu-Paz, et al. eds. Morgan Kaufmann, Las Vegas, Nevada, USA, 10-12 Jul
-
J.-T. Horng, C.-M. Lin, B.-J. Liu, et al. Using genetic algorithms to solve multiple sequence alignments. In D. Whitley, D. Goldberg, E. Cantu-Paz, et al., eds., Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2000), pp. 883-890. Morgan Kaufmann, Las Vegas, Nevada, USA, 10-12 Jul. 2000.
-
(2000)
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2000)
, pp. 883-890
-
-
Horng, J.-T.1
Lin, C.-M.2
Liu, B.-J.3
-
33
-
-
0345724915
-
Evolutionary computation method for pattern recognition of cis-acting sites
-
Nov. Special Issue on Computational Intelligence in Bioinformatics
-
D. Howard and K. Benson. Evolutionary computation method for pattern recognition of cis-acting sites. Biosystems, 72 (1-2): 19-27, Nov. 2003. Special Issue on Computational Intelligence in Bioinformatics.
-
(2003)
Biosystems
, vol.72
, Issue.1-2
, pp. 19-27
-
-
Howard, D.1
Benson, K.2
-
34
-
-
0008954994
-
Biopattern discovery by genetic programming
-
J. K. et al, ed. Morgan Kaufmann
-
Y.-J. Hu. Biopattern discovery by genetic programming. In J. K. et al, ed., Proceedings Genetic Programming 1998, pp. 152-157. Morgan Kaufmann, 1998.
-
(1998)
Proceedings Genetic Programming 1998
, pp. 152-157
-
-
Hu, Y.-J.1
-
35
-
-
0034213458
-
Solution structure of the MEF2A-DNA complex: structural basis for the modulation of DNA bending and specificity by MADS-box transcription factors
-
K. Huang, J. Louis, L. Donaldson, et al. Solution structure of the MEF2A-DNA complex: structural basis for the modulation of DNA bending and specificity by MADS-box transcription factors. EMBO J., 19: 2615-2628, 2000.
-
(2000)
EMBO J.
, vol.19
, pp. 2615-2628
-
-
Huang, K.1
Louis, J.2
Donaldson, L.3
-
37
-
-
3543058058
-
Multiple sequence alignment using a genetic algorithm
-
M. Isokawa, M. Wayama, and T. Shimizu. Multiple sequence alignment using a genetic algorithm. Genome Informatics, 7: 176-177, 1996.
-
(1996)
Genome Informatics
, vol.7
, pp. 176-177
-
-
Isokawa, M.1
Wayama, M.2
Shimizu, T.3
-
38
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
S. A. Kauffman. Metabolic stability and epigenesis in randomly constructed genetic nets. Journal of Theoretical Biology, 22: 437-467, 1969.
-
(1969)
Journal of Theoretical Biology
, vol.22
, pp. 437-467
-
-
Kauffman, S.A.1
-
39
-
-
1542269420
-
Using programmatic motifs and genetic programming to classify protein sequences as to extracellular and membrane cellular location
-
V. W. Porto, N. Saravanan, D. Waagen, et al. eds. Springer-Verlag, Mission Valley Marriott, San Diego, California, USA, 25-27 Mar
-
J. Koza, F. Bennett, and D. Andre. Using programmatic motifs and genetic programming to classify protein sequences as to extracellular and membrane cellular location. In V. W. Porto, N. Saravanan, D. Waagen, et al., eds., Evolutionary Programming VII: Proceedings of the Seventh Annual Conference on Evolutionary Programming, vol. 1447 of LNCS. Springer-Verlag, Mission Valley Marriott, San Diego, California, USA, 25-27 Mar. 1998.
-
(1998)
Evolutionary Programming VII: Proceedings of the Seventh Annual Conference on Evolutionary Programming, Vol. 1447 of LNCS
-
-
Koza, J.1
Bennett, F.2
Andre, D.3
-
40
-
-
0041336054
-
Automatic discovery of protein motifs using genetic programming
-
X. Yao, ed. World Scientific, Singapore
-
J. R. Koza and D. Andre. Automatic discovery of protein motifs using genetic programming. In X. Yao, ed., Evolutionary Computation: Theory and Applications. World Scientific, Singapore, 1999.
-
(1999)
Evolutionary Computation: Theory and Applications
-
-
Koza, J.R.1
Andre, D.2
-
41
-
-
0034825617
-
Optimisation of HMM topology and its model parameters by genetic algorithms
-
S. Kwong, C. W. Chaua, K. F. Manb, et al. Optimisation of HMM topology and its model parameters by genetic algorithms. Pattern Recognition, 34 (2): 509-522, 2001.
-
(2001)
Pattern Recognition
, vol.34
, Issue.2
, pp. 509-522
-
-
Kwong, S.1
Chaua, C.W.2
Manb, K.F.3
-
46
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
O. Littlefield, Y. Korkhin, and P. Sigler. The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl. Acad. Sci. USA, 96: 13668-13673, 1999.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.3
-
48
-
-
13444282474
-
InterPro, progress and status in 2005
-
Jan, Database Issue: D201-5
-
N. J. Mulder, R. Apweiler, T. K. Attwood, et al. InterPro, progress and status in 2005. Nucleic Acids Res, 33 Database Issue: D201-5, Jan 2005.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
-
49
-
-
0037402861
-
Editorial for special issue on evolvability
-
C. L. Nehaniv. Editorial for special issue on evolvability. BioSystems, 69: 77-81, 2003.
-
(2003)
BioSystems
, vol.69
, pp. 77-81
-
-
Nehaniv, C.L.1
-
50
-
-
60449107721
-
A parallel hybrid genetic algorithm for multiple protein sequence alignment
-
D. B. Fogel, M. A. El-Sharkawi, X. Yao, et al. eds. IEEE Press
-
H. D. Nguyen, I. Yoshihara, K. Yamamori, et al. A parallel hybrid genetic algorithm for multiple protein sequence alignment. In D. B. Fogel, M. A. El-Sharkawi, X. Yao, et al., eds., Proceedings of the 2002 Congress on Evolutionary Computation CEC2002, pp. 309-314. IEEE Press, 2002.
-
(2002)
Proceedings of the 2002 Congress on Evolutionary Computation CEC2002
, pp. 309-314
-
-
Nguyen, H.D.1
Yoshihara, I.2
Yamamori, K.3
-
51
-
-
67650557317
-
Improved GA-based method for multiple protein sequence alignment
-
R. Sarker, R. Reynolds, H. Abbass, et al. eds. IEEE Press, Canberra, 8-12 Dec
-
H. D. Nguyen, I. Yoshihara, Y. Yamamori, et al. Improved GA-based method for multiple protein sequence alignment. In R. Sarker, R. Reynolds, H. Abbass, et al., eds., Proceedings of the 2003 Congress on Evolutionary Computation CEC2003, pp. 1826-1832. IEEE Press, Canberra, 8-12 Dec. 2003.
-
(2003)
Proceedings of the 2003 Congress on Evolutionary Computation CEC2003
, pp. 1826-1832
-
-
Nguyen, H.D.1
Yoshihara, I.2
Yamamori, Y.3
-
52
-
-
0029872694
-
SAGA: sequence alignment by genetic algorithm
-
C. Notredame and D. G. Higgins. SAGA: sequence alignment by genetic algorithm. Nucleic Acids Res., 24 (8): 1515-1524, 1996.
-
(1996)
Nucleic Acids Res.
, vol.24
, Issue.8
, pp. 1515-1524
-
-
Notredame, C.1
Higgins, D.G.2
-
53
-
-
0002231993
-
Using evolutionary algorithms in the design of protein fingerprints
-
W. Banzhaf, J. Daida, A. E. Eiben, et al. eds. Morgan Kaufmann, Orlando, Florida, USA, 13-17 Jul
-
B. Olsson. Using evolutionary algorithms in the design of protein fingerprints. In W. Banzhaf, J. Daida, A. E. Eiben, et al., eds., Proceedings of the Genetic and Evolutionary Computation Conference, vol. 2, pp. 1636-1642. Morgan Kaufmann, Orlando, Florida, USA, 13-17 Jul. 1999.
-
(1999)
Proceedings of the Genetic and Evolutionary Computation Conference
, vol.2
, pp. 1636-1642
-
-
Olsson, B.1
-
54
-
-
0033563512
-
The biology of eukaryotic promoter prediction-a review
-
Jun
-
A. Pedersen, P. Baldi, Y. Chauvin, et al. The biology of eukaryotic promoter prediction-a review. Comput Chem, 23 (3-4): 191-207, Jun 1999.
-
(1999)
Comput Chem
, vol.23
, Issue.3-4
, pp. 191-207
-
-
Pedersen, A.1
Baldi, P.2
Chauvin, Y.3
-
55
-
-
0343597687
-
Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter
-
D. Pribnow. Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. Proc. Natl. Acad. Sci. USA, 72: 784-788, 1975.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 784-788
-
-
Pribnow, D.1
-
56
-
-
0036238824
-
The evolution of stochastic regular motifs for protein sequences
-
Feb.
-
B. J. Ross. The evolution of stochastic regular motifs for protein sequences. New Generation Computing, 20 (2): 187-213, Feb. 2002.
-
(2002)
New Generation Computing
, vol.20
, Issue.2
, pp. 187-213
-
-
Ross, B.J.1
-
57
-
-
35048869189
-
Evolving better multiple sequence alignments
-
K. Deb, R. Poli, W. Banzhaf, et al. eds. Springer-Verlag, Seattle, WA, USA, 26-30 Jun
-
L. Sheneman and J. A. Foster. Evolving better multiple sequence alignments. In K. Deb, R. Poli, W. Banzhaf, et al., eds., Genetic and Evolutionary Computation-GECCO-2004, Part I, vol. 3102 of Lecture Notes in Computer Science, pp. 449-460. Springer-Verlag, Seattle, WA, USA, 26-30 Jun. 2004.
-
(2004)
Genetic and Evolutionary Computation-GECCO-2004, Part I, vol. 3102 of Lecture Notes in Computer Science
, pp. 449-460
-
-
Sheneman, L.1
Foster, J.A.2
-
58
-
-
85139569211
-
Evolving guide trees in progressive multiple sequence alignment
-
A. M. Barry, ed. AAAI, Chigaco, 11 Jul
-
L. J. Sheneman and J. A. Foster. Evolving guide trees in progressive multiple sequence alignment. In A. M. Barry, ed., GECCO 2003: Proceedings of the Bird of a Feather Workshops, Genetic and Evolutionary Computation Conference, pp. 89-91. AAAI, Chigaco, 11 Jul. 2003.
-
(2003)
GECCO 2003: Proceedings of the Bird of a Feather Workshops, Genetic and Evolutionary Computation Conference
, pp. 89-91
-
-
Sheneman, L.J.1
Foster, J.A.2
-
59
-
-
3543059897
-
Multiple sequence alignment with evolutionary computation
-
Prepublication Date: 03/23/2004
-
C. Shyu, L. Sheneman, and J. A. Foster. Multiple sequence alignment with evolutionary computation. Genetic Programming and Evolvable Machines, 5 (2): 121-144, 2004. Prepublication Date: 03/23/2004.
-
(2004)
Genetic Programming and Evolvable Machines
, vol.5
, Issue.2
, pp. 121-144
-
-
Shyu, C.1
Sheneman, L.2
Foster, J.A.3
-
60
-
-
84887947581
-
Optimizing hidden Markov models with a genetic algorithm
-
J.-M. Alliot, E. Lutton, E. M. A. Ronald, et al. eds. Springer
-
M. Slimane, G. Venturini, J. P. A. de Beauville, et al. Optimizing hidden Markov models with a genetic algorithm. In J.-M. Alliot, E. Lutton, E. M. A. Ronald, et al., eds., Artificial Evolution, vol. 1063 of Lecture Notes in Computer Science, pp. 384-396. Springer, 1995.
-
(1995)
Artificial Evolution Vol. 1063 of Lecture Notes in Computer Science
, pp. 384-396
-
-
Slimane, M.1
Venturini, G.2
De Beauville, J.P.A.3
-
61
-
-
0034072450
-
DNA binding sites: representation and discovery
-
January
-
G. Stormo. DNA binding sites: representation and discovery. Bioinformatics, 16 (1): 16-23, January 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.1
, pp. 16-23
-
-
Stormo, G.1
-
62
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Nov
-
J. Thompson, D. Higgins, and T. Gibson. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res, 22 (22): 4673-80, Nov 1994.
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
63
-
-
84944313315
-
Evolving the topology of hidden markov models using evolutionary algorithms
-
J. J. M. Guervós, P. Adamidis, H.-G. Beyer, et al. eds. Springer
-
R. Thomsen. Evolving the topology of hidden markov models using evolutionary algorithms. In J. J. M. Guervós, P. Adamidis, H.-G. Beyer, et al., eds., Parallel Problem Solving from Nature-PPSN VII, vol. 2439 of Lecture Notes in Computer Science, pp. 861-870. Springer, 2002.
-
(2002)
Parallel Problem Solving from Nature-PPSN VII, Vol. 2439 of Lecture Notes in Computer Science
, pp. 861-870
-
-
Thomsen, R.1
-
64
-
-
84901466334
-
A clustal alignment improver using evolutionary algorithms
-
D. B. Fogel, X. Yao, G. Greenwood, et al. eds
-
R. Thomsen, G. B. Fogel, and T. Krink. A clustal alignment improver using evolutionary algorithms. In D. B. Fogel, X. Yao, G. Greenwood, et al., eds., Proceedings of the Fourth Congress on Evolutionary Computation (CEC-2002), vol. 1, pp. 121-126. 2002.
-
(2002)
Proceedings of the Fourth Congress on Evolutionary Computation (CEC-2002)
, vol.1
, pp. 121-126
-
-
Thomsen, R.1
Fogel, G.B.2
Krink, T.3
-
65
-
-
84937434684
-
Evolving Turing machines for biosequences recognition and analysis
-
J. F. Miller, M. Tomassini, P. L. Lanzi, et al. eds., Springer-Verlag, Lake Como, Italy, 18-20 Apr
-
E. E. Vallejo and F. Ramos. Evolving Turing machines for biosequences recognition and analysis. In J. F. Miller, M. Tomassini, P. L. Lanzi, et al., eds., Genetic Programming, Proceedings of EuroGP'2001, vol. 2038 of LNCS, pp. 192-203. Springer-Verlag, Lake Como, Italy, 18-20 Apr. 2001.
-
(2001)
Genetic Programming, Proceedings of EuroGP'2001, vo.l. 2038 of LNCS
, pp. 192-203
-
-
Vallejo, E.E.1
Ramos, F.2
-
66
-
-
35248896790
-
Evolutionary two-dimensional DNA sequence alignment
-
E. Cantú-Paz, J. A. Foster, K. Deb, et al. eds. Springer-Verlag, 12-16 Jul
-
E. E. Vallejo and F. Ramos. Evolutionary two-dimensional DNA sequence alignment. In E. Cantú-Paz, J. A. Foster, K. Deb, et al., eds., Genetic and Evolutionary Computation-GECCO-2003, vol. 2723 of LNCS, pp. 429-430. Springer-Verlag, 12-16 Jul. 2003.
-
(2003)
Genetic and Evolutionary Computation-GECCO-2003, vol. 2723 of LNCS
, pp. 429-430
-
-
Vallejo, E.E.1
Ramos, F.2
-
67
-
-
0033379116
-
Promoter sequences and algorithmical methods for identifying them
-
A. Vanet, L. Marsan, and M.-F. Sagot. Promoter sequences and algorithmical methods for identifying them. Res. Microbiol., 150: 779-799, 1999.
-
(1999)
Res. Microbiol.
, vol.150
, pp. 779-799
-
-
Vanet, A.1
Marsan, L.2
Sagot, M.-F.3
-
68
-
-
1842667467
-
An approach to amino acid sequence alignment using a genetic algorithm
-
M. Wayama, K. Takahashi, and T. Shimizu. An approach to amino acid sequence alignment using a genetic algorithm. Genome Informatics, 6: 122-123, 1995.
-
(1995)
Genome Informatics
, vol.6
, pp. 122-123
-
-
Wayama, M.1
Takahashi, K.2
Shimizu, T.3
-
69
-
-
0032776529
-
Models for prediction and recognition of eukaryotic promoters
-
Feb
-
T. Werner. Models for prediction and recognition of eukaryotic promoters. Mamm Genome, 10 (2): 168-75, Feb 1999.
-
(1999)
Mamm Genome
, vol.10
, Issue.2
, pp. 168-175
-
-
Werner, T.1
-
70
-
-
0037869270
-
The state of the art of mammalian promoter recognition
-
Mar
-
T. Werner. The state of the art of mammalian promoter recognition. Brief Bioinform, 4 (1): 22-30, Mar 2003.
-
(2003)
Brief Bioinform
, vol.4
, Issue.1
, pp. 22-30
-
-
Werner, T.1
-
71
-
-
12344325673
-
Training HMM structure with genetic algorithm for biological sequence analysis
-
Dec
-
K.-J. Won, A. Prügel-Bennett, and A. Krogh. Training HMM structure with genetic algorithm for biological sequence analysis. Bioinformatics, 20 (18): 3613-9, Dec 2004.
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3613-3619
-
-
Won, K.-J.1
Prügel-Bennett, A.2
Krogh, A.3
-
72
-
-
0030310347
-
Extraction of hidden Markov model representations of signal patterns in DNA sequences
-
T. Yada, M. Ishikawa, H. Tanaka, et al. Extraction of hidden Markov model representations of signal patterns in DNA sequences. In Pacific Symposium on Biocomputing, pp. 686-96. 1996.
-
(1996)
Pacific Symposium on Biocomputing
, pp. 686-696
-
-
Yada, T.1
Ishikawa, M.2
Tanaka, H.3
-
73
-
-
0031461056
-
A genetic algorithm for multiple molecular sequence alignment
-
C. Zhang and A. K. Wong. A genetic algorithm for multiple molecular sequence alignment. Comput Appl Biosci., 13 (6): 565-581, 1997.
-
(1997)
Comput Appl Biosci.
, vol.13
, Issue.6
, pp. 565-581
-
-
Zhang, C.1
Wong, A.K.2
|