메뉴 건너뛰기




Volumn 1, Issue , 2002, Pages 309-314

A parallel hybrid genetic algorithm for multiple protein sequence alignment

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS;

EID: 60449107721     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CEC.2002.1006252     Document Type: Conference Paper
Times cited : (17)

References (26)
  • 1
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • S. B. Needleman and C. D. Wunsch, "A general method applicable to the search for similarities in the amino acid sequence of two proteins", Journal of Molecular Biology, 48, 1970, pp. 443-453.
    • (1970) Journal of Molecular Biology , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 2
    • 0028341506 scopus 로고
    • Comparative analysis of multiple protein-sequence alignment methods
    • M. A. McClure, T. K. Vasi, and W. M. Fitch, "Comparative analysis of multiple protein-sequence alignment methods", Molecular Biology and Evolution, 11(4), 1994, pp. 571-592. (Pubitemid 24198534
    • (1994) Molecular Biology and Evolution , vol.11 , Issue.4 , pp. 571-592
    • McClure, M.A.1    Vasi, T.K.2    Fitch, W.M.3
  • 3
    • 0031850192 scopus 로고    scopus 로고
    • Comparative analysis of seven multiple protein sequence alignment servers: Clues to enhance reliability of predictions
    • P. Briffeuil, G. Baudoux, C. Lambert, X. De Bolle, C. Vinals, E. Feytmans, and E. Depiereux, "Comparative analysis of seven multiple protein sequence alignment servers: clues to enhance reliability of predictions", Bioinformatics, 14, 1998, pp. 357-366. (Pubitemid 28393801
    • (1998) Bioinformatics , vol.14 , Issue.4 , pp. 357-366
    • Briffeuil, P.1    Baudoux, G.2    Lambert, C.3    De Bolle, X.4    Vinals, C.5    Feytmans, E.6    Depiereux, E.7
  • 4
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • DOI 10.1093/nar/27.13.2682
    • J. D. Thompson, F. Plewniak, and O. Poch, "A comprehensive comparison of multiple sequence alignment programs", Nucleic Acids Research, 27,1999, pp. 2682-2690. (Pubitemid 29306566
    • (1999) Nucleic Acids Research , vol.27 , Issue.13 , pp. 2682-2690
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 5
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • D. F. Feng and R. F. Doolittle, "Progressive sequence alignment as a prerequisite to correct phylogenetic trees", Journal of Molecular Evolution, 25,1987, pp. 351-360.
    • (1987) Journal of Molecular Evolution , vol.25 , pp. 351-360
    • Feng, D.F.1    Doolittle, R.F.2
  • 6
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • J. D. Thompson, D. G. Higgins, and T. J. Gibson, "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic Acids Research, 22, 1994, pp.46734680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 46734680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 8
    • 0029366816 scopus 로고
    • Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment
    • S. K. Gupta, J. D. Kececioglu, and A. A. Schaffer, "Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment", Journal of Computational Biology, 2(3), 1995, pp. 459472.
    • (1995) Journal of Computational Biology , vol.2 , Issue.3 , pp. 459472
    • Gupta, S.K.1    Kececioglu, J.D.2    Schaffer, A.A.3
  • 9
    • 0033665509 scopus 로고    scopus 로고
    • An iterative method for faster sum-of-pairs multiple sequence alignment
    • K. Reinert, J. Stoye, and T. Will, "An iterative method for faster sum-of-pairs multiple sequence alignment", Bioinformatics, 16, 2000, pp. 808-814.
    • (2000) Bioinformatics , vol.16 , pp. 808-814
    • Reinert, K.1    Stoye, J.2    Will, T.3
  • 10
    • 0000787124 scopus 로고    scopus 로고
    • Improvement of the A * algorithm for multiple sequence alignment
    • H. Kobayashi and H. Imai, "Improvement of the A * algorithm for multiple sequence alignment", in Proceedings of Genome Informatics Workshop, 1999, pp. 120-130.
    • (1999) Proceedings of Genome Informatics Workshop , pp. 120-130
    • Kobayashi, H.1    Imai, H.2
  • 11
    • 0033006303 scopus 로고    scopus 로고
    • Combining many multiple alignments in one improved alignment
    • DOI 10.1093/bioinformatics/15.2.122
    • K. B. Lassen, O. Caprani, and J. Hein, "Combining many multiple alignments in one improved alignment", Bioinformatics, 15,1999, pp. 122-130. (Pubitemid 29134726
    • (1999) Bioinformatics , vol.15 , Issue.2 , pp. 122-130
    • Bucka-Lassen, K.1    Caprani, O.2    Hein, J.3
  • 14
    • 0029872694 scopus 로고    scopus 로고
    • SAGA: Sequence alignment by genetic algorithm
    • DOI 10.1093/nar/24.8.1515
    • C. Notredame and D. G. Higgins, "SAGA: sequence alignment by genetic algorithm", Nucleic Acids Research, 24,1996, pp. 1515-1524. (Pubitemid 26118985
    • (1996) Nucleic Acids Research , vol.24 , Issue.8 , pp. 1515-1524
    • Notredame, C.1    Higgins, D.G.2
  • 15
    • 1842717540 scopus 로고    scopus 로고
    • Multiple sequence alignment by genetic algorithm
    • Y. Harada, T. Yokoyama, and T. Shimizu, "Multiple sequence alignment by genetic algorithm", Genome Informatics, 11, 2000, pp. 317-318.
    • (2000) Genome Informatics , vol.11 , pp. 317-318
    • Harada, Y.1    Yokoyama, T.2    Shimizu, T.3
  • 17
    • 0024964655 scopus 로고
    • Gap costs for multiple sequence alignment
    • S. F. Altschul, "Gap costs for multiple sequence alignment", Journal of Theoretical Biology, 138, 1989, pp. 297-309.
    • (1989) Journal of Theoretical Biology , vol.138 , pp. 297-309
    • Altschul, S.F.1
  • 19
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • National Biomedical Research Foundation Washinton DC USA
    • M. O. Dayhoff, R. M. Schwartz, and B. C. Orcutt, "A model of evolutionary change in proteins", in Atlas of Protein Sequence and Structure, vol. 5, suppl. 3, National Biomedical Research Foundation, Washinton DC, USA, 1978, pp. 345-352.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL.3 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 21
    • 0003389370 scopus 로고
    • The GENITOR algorithm and selective pressure: Why rank-based allocation of reproductive trials is best
    • J. D. Schaeffer, ed., Morgan Kaufmann
    • D. Whitley, "The GENITOR algorithm and selective pressure: why rank-based allocation of reproductive trials is best", in Proceedings of the 3rd International Conference on Genetic Algorithms, J. D. Schaeffer, ed., Morgan Kaufmann, 1989.
    • (1989) Proceedings of the 3rd International Conference on Genetic Algorithms
    • Whitley, D.1
  • 23
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • N. Saitou and M. Nei, "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4,1987, pp. 406-425
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 24
    • 13944250829 scopus 로고    scopus 로고
    • Implementing fast and flexible parallel genetic algorithms
    • E. Cantu-Paz, "Implementing fast and flexible parallel genetic algorithms", Practical Handbook of Genetic Algorithms - Volume III, 1999, pp. 65-84.
    • (1999) Practical Handbook of Genetic Algorithms , vol.3 , pp. 65-84
    • Cantu-Paz, E.1
  • 25
    • 0032988850 scopus 로고    scopus 로고
    • BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs
    • DOI 10.1093/bioinformatics/15.1.87
    • J. D. Thompson, F. Plewniak, and O. Poch, "BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs", Bioinformatics, 15, 1999, pp. 87-88. (Pubitemid 29101202
    • (1999) Bioinformatics , vol.15 , Issue.1 , pp. 87-88
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 26
    • 84901435194 scopus 로고    scopus 로고
    • OMA homepage, http://bibiserv.techfak.uni-bielefeld.de/oma/
    • OMA Homepage


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.