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Volumn 65, Issue 1, 2007, Pages 44-67

Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria

Author keywords

Bacterial diversity; Concerted evolution; Copy number; Gene conversion; Intergenic spacer; Multigene family; Ribosomal RNA (rrn) operon

Indexed keywords

ALANINE; GLUTAMINE; INTERNAL TRANSCRIBED SPACER; ISOLEUCINE; RIBOSOME RNA; TRANSFER RNA;

EID: 34547656212     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-006-0235-3     Document Type: Article
Times cited : (59)

References (72)
  • 1
    • 3242884054 scopus 로고    scopus 로고
    • Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, Distel DL, Polz MF (2004a) Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430:551-5554
    • (2004) Nature , vol.430 , pp. 551
    • Acinas1
  • 2
    • 1942443733 scopus 로고    scopus 로고
    • Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF (2004b) Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J Bacteriol 186:2628-2635
    • (2004) J Bacteriol , vol.186 , pp. 2628
    • Acinas1
  • 3
    • 0031780508 scopus 로고    scopus 로고
    • Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli
    • Antón AI, Martínez-Murcia AJ, Rodríguez-Valera F (1998) Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli. ECOR collection J Mol Evol 47:62-72
    • (1998) ECOR Collection J Mol Evol , vol.47 , pp. 62-72
    • Antón, A.I.1    Martínez-Murcia, A.J.2    Rodríguez-Valera, F.3
  • 4
    • 0024457861 scopus 로고
    • Ribosomal RNA operon anti-termination-function of leader and spacer region box B-box a sequences and their conservation in diverse microorganisms
    • Berg KL, Squires C, Squires CL (1989) Ribosomal RNA operon anti-termination-function of leader and spacer region box B-box A sequences and their conservation in diverse microorganisms. J Mol Biol 209:345-358
    • (1989) J Mol Biol , vol.209 , pp. 345-358
    • Berg, K.L.1    Squires, C.2    Squires, C.L.3
  • 5
    • 0034993578 scopus 로고    scopus 로고
    • Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? a case study in cyanobacteria
    • Boyer SL, Flechtner VR, Johansen JR (2001) Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol Biol Evol 18:1057-1069
    • (2001) Mol Biol Evol , vol.18 , pp. 1057-1069
    • Boyer, S.L.1    Flechtner, V.R.2    Johansen, J.R.3
  • 6
    • 0036926698 scopus 로고    scopus 로고
    • Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region
    • Boyer SL, Johansen JR, Flechtner VR, Howard GL (2002) Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region. J Phycol 38:1222-1235
    • (2002) J Phycol , vol.38 , pp. 1222-1235
    • Boyer, S.L.1    Johansen, J.R.2    Flechtner, V.R.3    Howard, G.L.4
  • 7
    • 28944440027 scopus 로고    scopus 로고
    • Marine bacterial microdiversity as revealed by internal transcribed spacer analysis
    • Brown MV, Fuhrman JA (2005) Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. Aquat Microb Ecol 41:15-23
    • (2005) Aquat Microb Ecol , vol.41 , pp. 15-23
    • Brown, M.V.1    Fuhrman, J.A.2
  • 8
    • 23944517269 scopus 로고    scopus 로고
    • Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: Development and application to a time series
    • Brown MV, Schwalbach MS, Hewson I, Fuhrman JA (2005) Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ Microbiol 7:1466-1479
    • (2005) Environ Microbiol , vol.7 , pp. 1466-1479
    • Brown, M.V.1    Schwalbach, M.S.2    Hewson, I.3    Fuhrman, J.A.4
  • 9
    • 0015505278 scopus 로고
    • Xenopus laevis and Xenopus mulleri: The evolution of tandem genes
    • Brown DD, Wensink PC, Jordan E (1972) Xenopus laevis and Xenopus mulleri: the evolution of tandem genes. J Mol Biol 63:57-73
    • (1972) J Mol Biol , vol.63 , pp. 57-73
    • Brown, D.D.1    Wensink, P.C.2    Jordan, E.3
  • 11
    • 0032954830 scopus 로고    scopus 로고
    • Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus
    • Chun J, Huq A, Colwell RR (1999) Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus. Appl Environ Microbiol 65:2202-2208
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2202-2208
    • Chun, J.1    Huq, A.2    Colwell, R.R.3
  • 13
    • 0030446912 scopus 로고    scopus 로고
    • Global climate and infectious disease: The cholera paradigm
    • Colwell RR (1996) Global climate and infectious disease: the cholera paradigm. Science 274:2025-2031
    • (1996) Science , vol.274 , pp. 2025-2031
    • Colwell, R.R.1
  • 14
    • 0037388225 scopus 로고    scopus 로고
    • Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
    • Crosby LD, Criddle CS (2003) Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. Biotechniques 34:790-802
    • (2003) Biotechniques , vol.34 , pp. 790-802
    • Crosby, L.D.1    Criddle, C.S.2
  • 15
    • 33749385463 scopus 로고    scopus 로고
    • Off-axis symbiosis found: Characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents
    • Dechaine EG, Bates AE, Shank TM, Cavanaugh CM (2006) Off-axis symbiosis found: characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents. Environ Microbiol 8:1902-1912
    • (2006) Environ Microbiol , vol.8 , pp. 1902-1912
    • Dechaine, E.G.1    Bates, A.E.2    Shank, T.M.3    Cavanaugh, C.M.4
  • 16
    • 33644856111 scopus 로고    scopus 로고
    • IwoCS: Analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships
    • D'Auria G, Pushker R, Rodriguez-Valera F (2006) IwoCS: analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships. Bioinformatics 22:527-531
    • (2006) Bioinformatics , vol.22 , pp. 527-531
    • D'Auria, G.1    Pushker, R.2    Rodriguez-Valera, F.3
  • 18
    • 0023376794 scopus 로고
    • Homogenization of tandemly repeated nucleotide sequences by distant-dependent nucleotide sequence conversion
    • Dvorak JD, Jue D, Lassner M (1987) Homogenization of tandemly repeated nucleotide sequences by distant-dependent nucleotide sequence conversion. Genetics 116:487-498
    • (1987) Genetics , vol.116 , pp. 487-498
    • Dvorak, J.D.1    Jue, D.2    Lassner, M.3
  • 19
    • 0003437299 scopus 로고    scopus 로고
    • Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
    • (2005) PHYLIP (Phylogeny Inference Package) Version 3.6
    • Felsenstein, J.1
  • 20
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher MM, Triplett EW (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65:4630-4636
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 22
    • 0037757535 scopus 로고    scopus 로고
    • Conservation of the mosaic structure of the four internal transcribed spacers and localization of the rrn operons on the Streptococcus pneumoniae genome
    • Gianninò V, Santagati M, Guardo G, Cascone C, Rappazzo G, Stefani S (2003) Conservation of the mosaic structure of the four internal transcribed spacers and localization of the rrn operons on the Streptococcus pneumoniae genome. FEMS Microbiol Lett 223:245-252
    • (2003) FEMS Microbiol Lett , vol.223 , pp. 245-252
    • Gianninò, V.1    Santagati, M.2    Guardo, G.3    Cascone, C.4    Rappazzo, G.5    Stefani, S.6
  • 23
    • 19444385866 scopus 로고    scopus 로고
    • Polymorphism and gene conversion of the 16S rRNA genes in the multiple rRNA operons of Vibrio parahaemolyticus
    • González-Escalona N, Romero J, Espejo RT (2005) Polymorphism and gene conversion of the 16S rRNA genes in the multiple rRNA operons of Vibrio parahaemolyticus. FEMS Microbiol Lett 246:213-219
    • (2005) FEMS Microbiol Lett , vol.246 , pp. 213-219
    • González-Escalona, N.1    Romero, J.2    Espejo, R.T.3
  • 25
    • 0030743072 scopus 로고    scopus 로고
    • Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp
    • Graham TA, Golsteyn-Thomas EJ, Thomas JE, Gannon VP (1997) Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp. Int J Syst Bacteriol 47:863-869
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 863-869
    • Graham, T.A.1    Golsteyn-Thomas, E.J.2    Thomas, J.E.3    Gannon, V.P.4
  • 26
    • 0344172783 scopus 로고    scopus 로고
    • The role of recombination and mutation in 16S-23S rDNA spacer rearrangements
    • Gürtler V (1999) The role of recombination and mutation in 16S-23S rDNA spacer rearrangements. Gene 238:241-252
    • (1999) Gene , vol.238 , pp. 241-252
    • Gürtler, V.1
  • 27
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gürtler V, Stanisich V (1996) New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142:3-16
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gürtler, V.1    Stanisich, V.2
  • 28
    • 0032945940 scopus 로고    scopus 로고
    • RDNA spacer rearrangements and concerted evolution
    • Gürtler V, Mayall BC (1999) rDNA spacer rearrangements and concerted evolution. Microbiology 145:2-3
    • (1999) Microbiology , vol.145 , pp. 2-3
    • Gürtler, V.1    Mayall, B.C.2
  • 29
    • 13544252535 scopus 로고    scopus 로고
    • Ecotypes of planktonic Actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical, and tropical freshwater habitats
    • Hahn MW, Pöckl M (2005) Ecotypes of planktonic Actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical, and tropical freshwater habitats. Appl Environ Microbiol 71:766-773
    • (2005) Appl Environ Microbiol , vol.71 , pp. 766-773
    • Hahn, M.W.1    Pöckl, M.2
  • 30
    • 1942440980 scopus 로고    scopus 로고
    • A putative transposase gene in the 16S-23S rRNA intergenic spacer region of Mycoplasma imitans
    • Harasawa R, Pitcher DG, Ramírez AS, Bradbury JM (2004) A putative transposase gene in the 16S-23S rRNA intergenic spacer region of Mycoplasma imitans. Microbiology 150:1023-1029
    • (2004) Microbiology , vol.150 , pp. 1023-1029
    • Harasawa, R.1    Pitcher, D.G.2    Ramírez, A.S.3    Bradbury, J.M.4
  • 31
    • 0037309169 scopus 로고    scopus 로고
    • Rates and consequences of recombination between rRNA operons
    • Hashimoto JG, Stevenson BS, Schmidt TM (2003) Rates and consequences of recombination between rRNA operons. J Bacteriol 185:966-972
    • (2003) J Bacteriol , vol.185 , pp. 966-972
    • Hashimoto, J.G.1    Stevenson, B.S.2    Schmidt, T.M.3
  • 32
    • 0026063996 scopus 로고
    • Evidence for biased gene conversion in concerted evolution of ribosomal DNA
    • Hillis DM, Moritz C, Porter CA, Baker RJ (1991) Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science 251:308-310
    • (1991) Science , vol.251 , pp. 308-310
    • Hillis, D.M.1    Moritz, C.2    Porter, C.A.3    Baker, R.J.4
  • 33
    • 0037392945 scopus 로고    scopus 로고
    • Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica
    • Hurtado LA, Mateos M, Lutz RA, Vrijenhoek RC (2003) Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica. Appl Environ Microbiol 69:2058-2064
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2058-2064
    • Hurtado, L.A.1    Mateos, M.2    Lutz, R.A.3    Vrijenhoek, R.C.4
  • 34
    • 0034129537 scopus 로고    scopus 로고
    • Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria
    • Iteman I, Rippka R, Tandeau de Marsac N, Herdman M (2000) Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria. Microbiology 146:1275-1286
    • (2000) Microbiology , vol.146 , pp. 1275-1286
    • Iteman, I.1    Rippka, R.2    De Tandeau Marsac, N.3    Herdman, M.4
  • 35
    • 4143136662 scopus 로고    scopus 로고
    • Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies
    • Jaspers E, Overmann K (2004) Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 70:4831-4839
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4831-4839
    • Jaspers, E.1    Overmann, K.2
  • 36
    • 33745800848 scopus 로고    scopus 로고
    • Experimental manipulations of microbial food web interactions in a humic lake: Shifting biological drivers of bacterial community structure
    • Kent AD, Jones SE, Lauster GH, Graham JM, Newton RJ, McMahon KD (2006) Experimental manipulations of microbial food web interactions in a humic lake: shifting biological drivers of bacterial community structure. Environ Microbiol 8:1448-1459
    • (2006) Environ Microbiol , vol.8 , pp. 1448-1459
    • Kent, A.D.1    Jones, S.E.2    Lauster, G.H.3    Graham, J.M.4    Newton, R.J.5    McMahon, K.D.6
  • 37
    • 0034074410 scopus 로고    scopus 로고
    • RRNA operon copy number reflects ecological strategies of bacteria
    • Klappenbach JA, Dunbar JM, Schmidt TM (2000) rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol 66:1328-1333
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1328-1333
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3
  • 38
    • 0031801644 scopus 로고    scopus 로고
    • Recombination between rRNA operons created most of the ribotype variation observed in the seventh pandemic clone of Vibrio cholerae
    • Lan R, Reeves PR (1998) Recombination between rRNA operons created most of the ribotype variation observed in the seventh pandemic clone of Vibrio cholerae. Microbiology 144:1213-1221
    • (1998) Microbiology , vol.144 , pp. 1213-1221
    • Lan, R.1    Reeves, P.R.2
  • 39
    • 0033759525 scopus 로고    scopus 로고
    • Gene conversion drives within genic sequences: Concerted evolution of ribosomal RNA genes in Bacteria and Archaea
    • Liao D (2000) Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in Bacteria and Archaea. J Mol Evol 51:305-317
    • (2000) J Mol Evol , vol.51 , pp. 305-317
    • Liao, D.1
  • 40
    • 0028088757 scopus 로고
    • Recombination between repeats in Escherichia coli by a recA-independent, proximity-sensitive mechanism
    • Lovett ST, Gluckman TJ, Simon PJ, Sutera VA Jr, Drapkin PT (1994) Recombination between repeats in Escherichia coli by a recA-independent, proximity-sensitive mechanism. Mol Gen Genet 245:294-300
    • (1994) Mol Gen Genet , vol.245 , pp. 294-300
    • Lovett, S.T.1    Gluckman, T.J.2    Simon, P.J.3    Sutera Jr., V.A.4    Drapkin, P.T.5
  • 41
    • 0034351388 scopus 로고    scopus 로고
    • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
    • Lutzoni F, Wagner P, Reeb V, Zoller S (2000) Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Syst Biol 49:628-651
    • (2000) Syst Biol , vol.49 , pp. 628-651
    • Lutzoni, F.1    Wagner, P.2    Reeb, V.3    Zoller, S.4
  • 42
    • 15144358617 scopus 로고    scopus 로고
    • Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies
    • Luz SP, Rodriguez-Valera F, Lan R, Reeves PS (1998) Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies. J Bacteriol 180:2144-2151
    • (1998) J Bacteriol , vol.180 , pp. 2144-2151
    • Luz, S.P.1    Rodriguez-Valera, F.2    Lan, R.3    Reeves, P.S.4
  • 44
    • 0029989632 scopus 로고    scopus 로고
    • Salmonella typhimurium LT2 possesses three distinct 23S rRNA intervening sequences
    • Mattatall NR, Sanderson KE (1996) Salmonella typhimurium LT2 possesses three distinct 23S rRNA intervening sequences. J Bacteriol 178:2272-2278
    • (1996) J Bacteriol , vol.178 , pp. 2272-2278
    • Mattatall, N.R.1    Sanderson, K.E.2
  • 45
    • 4644275329 scopus 로고    scopus 로고
    • Intragenomic heterogeneity of the 16S rRNA-23S rRNA internal transcribed spacer among Pseudomonas syringae and Pseudomonas fluorescens strains
    • Milyutina IA, Bobrova VK, Matveeva EV, Schaad NW, Troitsky AV (2004) Intragenomic heterogeneity of the 16S rRNA-23S rRNA internal transcribed spacer among Pseudomonas syringae and Pseudomonas fluorescens strains. FEMS Microbiol Lett 239:17-23
    • (2004) FEMS Microbiol Lett , vol.239 , pp. 17-23
    • Milyutina, I.A.1    Bobrova, V.K.2    Matveeva, E.V.3    Schaad, N.W.4    Troitsky, A.V.5
  • 47
    • 0032143012 scopus 로고    scopus 로고
    • Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms?
    • Nagpal ML, Fox KF, Fox A (1998) Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms? J Microbiol Meth 33:211-219
    • (1998) J Microbiol Meth , vol.33 , pp. 211-219
    • Nagpal, M.L.1    Fox, K.F.2    Fox, A.3
  • 48
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M, Rooney AP (2005) Concerted and birth-and-death evolution of multigene families Annu Rev Genet 39:121-152
    • (2005) Annu Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 49
    • 13544256355 scopus 로고    scopus 로고
    • Variation in 16S-23S rRNA intergenic spacer regions in Photobacterium damselae: A mosaic-like structure
    • Osorio CR, Collins MD, Romalde JL, Toranzo AE (2005) Variation in 16S-23S rRNA intergenic spacer regions in Photobacterium damselae: a mosaic-like structure. Appl Environ Microbiol 71:636-645
    • (2005) Appl Environ Microbiol , vol.71 , pp. 636-645
    • Osorio, C.R.1    Collins, M.D.2    Romalde, J.L.3    Toranzo, A.E.4
  • 51
    • 33645085602 scopus 로고    scopus 로고
    • Minding the gap: Frequency of indels in mtDNA control region sequence data and influence on population genetic analyses
    • Pearce JM (2006) Minding the gap: frequency of indels in mtDNA control region sequence data and influence on population genetic analyses. Mol Ecol 15:333-341
    • (2006) Mol Ecol , vol.15 , pp. 333-341
    • Pearce, J.M.1
  • 53
    • 0032527846 scopus 로고    scopus 로고
    • Cloning and sequencing of a 16S/23S ribosomal spacer from Haemophilus parainfluenzae reveals an invariant, mosaic-like organization of sequence blocks
    • Privitera A, Rappazzo G, Sangari P, Giannino V, Licciardello L, Stefani S (1998) Cloning and sequencing of a 16S/23S ribosomal spacer from Haemophilus parainfluenzae reveals an invariant, mosaic-like organization of sequence blocks. FEMS Microbiol Lett 164:289-294
    • (1998) FEMS Microbiol Lett , vol.164 , pp. 289-294
    • Privitera, A.1    Rappazzo, G.2    Sangari, P.3    Giannino, V.4    Licciardello, L.5    Stefani, S.6
  • 54
    • 0034466653 scopus 로고    scopus 로고
    • Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking
    • Ranjard L, Brothier E, Nazaret S (2000) Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Appl Environ Microbiol 66:5334-5339
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5334-5339
    • Ranjard, L.1    Brothier, E.2    Nazaret, S.3
  • 55
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68:1180-1191
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 57
    • 17044401340 scopus 로고    scopus 로고
    • Evolution of a large ribosomal RNA multigene family in filamentous fungi: Birth and death of a concerted evolution paradigm
    • Rooney AP, Ward TJ (2005) Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm. Proc Natl Acad Sci USA 102:5084-5089
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5084-5089
    • Rooney, A.P.1    Ward, T.J.2
  • 58
  • 59
    • 15944412560 scopus 로고    scopus 로고
    • Gene conversion and concerted evolution in bacterial genomes
    • Santoyo G, Romero D (2005) Gene conversion and concerted evolution in bacterial genomes. FEMS Microbiol Rev 29:169-183
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 169-183
    • Santoyo, G.1    Romero, D.2
  • 62
    • 0028010718 scopus 로고
    • Approaches to half-tetrad analysis in bacteria: Recombination between repeated, inverse-order chromosomal sequences
    • Segall AM, Roth JR (1994) Approaches to half-tetrad analysis in bacteria: recombination between repeated, inverse-order chromosomal sequences. Genetics 136:27-39
    • (1994) Genetics , vol.136 , pp. 27-39
    • Segall, A.M.1    Roth, J.R.2
  • 63
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons MP, Ochoterena H (2000) Gaps as characters in sequence-based phylogenetic analyses. Syst Biol 49:369-381
    • (2000) Syst Biol , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 65
    • 0242500749 scopus 로고    scopus 로고
    • Atypical 16S rRNA gene copies in Ochrobactrum intermedium strains reveal a large genomic rearrangement by recombination between rrn copies
    • Teyssier C, Marchandin H, Siméon De Buochberg M, Ramuz M, Jumas-Bilak E (2003) Atypical 16S rRNA gene copies in Ochrobactrum intermedium strains reveal a large genomic rearrangement by recombination between rrn copies. J Bacteriol 185:2901-2909
    • (2003) J Bacteriol , vol.185 , pp. 2901-2909
    • Teyssier, C.1    Marchandin, H.2    De B.M.Siméon3    Ramuz, M.4    Jumas-Bilak, E.5
  • 67
    • 0242586014 scopus 로고    scopus 로고
    • Relationship between spatial and genetic distance in Agrobacterium spp in 1 cubic centimeter of soil
    • Vogel J, Normand P, Thiolouse J, Nesme X, Grundmann GL (2003) Relationship between spatial and genetic distance in Agrobacterium spp in 1 cubic centimeter of soil. Appl Environ Microbiol 69:1482-1487
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1482-1487
    • Vogel, J.1    Normand, P.2    Thiolouse, J.3    Nesme, X.4    Grundmann, G.L.5
  • 68
    • 0033955443 scopus 로고    scopus 로고
    • A comparison of estimators of the population recombination rate
    • Wall JD (2000) A comparison of estimators of the population recombination rate. Mol Biol Evol 17:156-163
    • (2000) Mol Biol Evol , vol.17 , pp. 156-163
    • Wall, J.D.1
  • 69
    • 0023449349 scopus 로고
    • Sequence-dependent gene conversion: Can duplicated genes diverge fast enough to escape conversion?
    • Walsh JB (1987) Sequence-dependent gene conversion: Can duplicated genes diverge fast enough to escape conversion? Genetics 117:543-557
    • (1987) Genetics , vol.117 , pp. 543-557
    • Walsh, J.B.1
  • 70
    • 25144438051 scopus 로고    scopus 로고
    • The functional significance of ribosomal (r)DNA variation: Impacts on the evolutionary ecology of organisms
    • Weider LJ, Elser JJ, Crease TJ, Mateos M, Cotner JB, Markow TA (2005) The functional significance of ribosomal (r)DNA variation: impacts on the evolutionary ecology of organisms. Annu Rev Ecol Evol Syst 36:219-242
    • (2005) Annu Rev Ecol Evol Syst , vol.36 , pp. 219-242
    • Weider, L.J.1    Elser, J.J.2    Crease, T.J.3    Mateos, M.4    Cotner, J.B.5    Markow, T.A.6
  • 71
    • 0036126091 scopus 로고    scopus 로고
    • Intragenomic and intraspecific polymorphism of the 16S-23S rRNA internally transcribed sequences of Streptomyces ambofaciens
    • Wenner T, Roth V, Decaris B, Leblond P (2002) Intragenomic and intraspecific polymorphism of the 16S-23S rRNA internally transcribed sequences of Streptomyces ambofaciens. Microbiology 148:633-642
    • (2002) Microbiology , vol.148 , pp. 633-642
    • Wenner, T.1    Roth, V.2    Decaris, B.3    Leblond, P.4
  • 72
    • 0004252445 scopus 로고    scopus 로고
    • 4 Prentice Hall Upper Saddle River, NJ
    • Zar JH (1999) Biostatistical Analysis, 4th ed. Prentice Hall, Upper Saddle River, NJ
    • (1999) Biostatistical Analysis
    • Zar, J.H.1


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