-
1
-
-
3242884054
-
Fine-scale phylogenetic architecture of a complex bacterial community
-
Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, Distel DL, Polz MF (2004) Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430:551-554
-
(2004)
Nature
, vol.430
, pp. 551-554
-
-
Acinas, S.G.1
Klepac-Ceraj, V.2
Hunt, D.E.3
Pharino, C.4
Ceraj, I.5
Distel, D.L.6
Polz, M.F.7
-
2
-
-
23944517269
-
Coupling 16S-ITS rDNA clone libraries and ARISA to show marine microbial diversity; development and application to a time series
-
Brown MV, Schwalbach MS, Hewson I, Fuhrman JA (2005) Coupling 16S-ITS rDNA clone libraries and ARISA to show marine microbial diversity; development and application to a time series. Environ Microbiol 7:1466-1479
-
(2005)
Environ Microbiol
, vol.7
, pp. 1466-1479
-
-
Brown, M.V.1
Schwalbach, M.S.2
Hewson, I.3
Fuhrman, J.A.4
-
3
-
-
2942679276
-
Small change: Keeping pace with microevolution
-
Feil EJ (2004) Small change: keeping pace with microevolution. Nature Rev Microbiol 2:483-495
-
(2004)
Nature Rev Microbiol
, vol.2
, pp. 483-495
-
-
Feil, E.J.1
-
5
-
-
0003437299
-
-
Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, WA
-
Felsenstein J (2004) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, WA
-
(2004)
PHYLIP (Phylogeny Inference Package) Version 3.6
-
-
Felsenstein, J.1
-
6
-
-
0031027068
-
Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
-
Field KG, Gordon D, Wright T, Rappe M, Urbach E, Vergin K, Giovanonni SJ (1997) Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl Environ Microbiol 63:63-70
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 63-70
-
-
Field, K.G.1
Gordon, D.2
Wright, T.3
Rappe, M.4
Urbach, E.5
Vergin, K.6
Giovanonni, S.J.7
-
7
-
-
0032879764
-
Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
-
Fisher MM, Triplett EW (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65:4630-4636
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4630-4636
-
-
Fisher, M.M.1
Triplett, E.W.2
-
8
-
-
0000615869
-
Extraction of DNA suitable for molecular biological studies from natural planktonic microorganisms
-
Fuhrman JA, Comeau DE, Hagström Å, Chan AM (1988) Extraction of DNA suitable for molecular biological studies from natural planktonic microorganisms. Appl Environ Microbiol 54:1426-1429
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1426-1429
-
-
Fuhrman, J.A.1
Comeau, D.E.2
Hagström, Å.3
Chan, A.M.4
-
9
-
-
0033929777
-
Microdiversity of uncultured marine prokaryotes: The SAR11 cluster and the marine archaea of group I
-
Garcia-Martinez J, Rodriguez-Valera F (2000) Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine archaea of group I. Mol Ecol 9:935-948
-
(2000)
Mol Ecol
, vol.9
, pp. 935-948
-
-
Garcia-Martinez, J.1
Rodriguez-Valera, F.2
-
10
-
-
0036306089
-
Use of 16S ribosomal DNA for delineation of marine bacterioplankton species
-
Hagström Å, Pommier T, Rohwer F, Simu K, Stolte W, Svensson D, Zweifel UL (2002) Use of 16S ribosomal DNA for delineation of marine bacterioplankton species. Appl Environ Microbiol 68:3628-3633
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3628-3633
-
-
Hagström, Å.1
Pommier, T.2
Rohwer, F.3
Simu, K.4
Stolte, W.5
Svensson, D.6
Zweifel, U.L.7
-
11
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
12
-
-
0036181778
-
Exploring prokaryotic diversity in the genomic era
-
reviews0003.1-8
-
Hugenholtz P (2002) Exploring prokaryotic diversity in the genomic era. Genome Biol 3:reviews0003.1-8
-
(2002)
Genome Biol
, vol.3
-
-
Hugenholtz, P.1
-
14
-
-
4143136662
-
Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies
-
Jaspers E, Overmann J (2004) Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 70:4831-4839
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4831-4839
-
-
Jaspers, E.1
Overmann, J.2
-
15
-
-
0035070157
-
Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes
-
Keswani J, Whitman WB (2001) Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int J Syst Evol Microbiol 51:667-678
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 667-678
-
-
Keswani, J.1
Whitman, W.B.2
-
16
-
-
7644238181
-
Biological robustness
-
Kitano H (2004) Biological robustness. Nature Rev Gen 5:826-837
-
(2004)
Nature Rev Gen
, vol.5
, pp. 826-837
-
-
Kitano, H.1
-
18
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E, Goodfellow M (eds). John Wiley & Sons, New York
-
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. John Wiley & Sons, New York, p 115-175
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
20
-
-
19944408938
-
Genome sequence of Silicibacter pomeroyii reveals adaptations to the marine environment
-
Moran MA, Buchan A, Gonzalez JM, Heidelberg JF and 31 others (2005) Genome sequence of Silicibacter pomeroyii reveals adaptations to the marine environment. Nature 432:910-913
-
(2005)
Nature
, vol.432
, pp. 910-913
-
-
Moran, M.A.1
Buchan, A.2
Gonzalez, J.M.3
Heidelberg, J.F.4
-
22
-
-
0036200876
-
Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
-
Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68:1180-1191
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1180-1191
-
-
Rocap, G.1
Distel, D.L.2
Waterbury, J.B.3
Chisholm, S.W.4
-
23
-
-
0042878464
-
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
-
Rocap G, Larimer FW, Lamerdin J, Malfatti S and 20 others (2003) Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424:1042-1047
-
(2003)
Nature
, vol.424
, pp. 1042-1047
-
-
Rocap, G.1
Larimer, F.W.2
Lamerdin, J.3
Malfatti, S.4
-
25
-
-
0042529200
-
Use of 16S-23S rRNA intergenic spacer region PCR and repetitive extra-genic palindromic PCR analysis of Escherichia coli isolates to identify nonpoint fecal sources
-
Seurinck S, Verstraete W, Siciliano SD (2003) Use of 16S-23S rRNA intergenic spacer region PCR and repetitive extra-genic palindromic PCR analysis of Escherichia coli isolates to identify nonpoint fecal sources. Appl Environ Microbiol 69:4942-4950
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4942-4950
-
-
Seurinck, S.1
Verstraete, W.2
Siciliano, S.D.3
-
26
-
-
2942627192
-
Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine alpha proteobacteria
-
Silke P, Allgaier M, Hocj C, Pauker O, Stackebrandt E, Wagner-Dobler I (2004) Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine alpha proteobacteria. Appl Environ Microbiol 70:3360-3369
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3360-3369
-
-
Silke, P.1
Allgaier, M.2
Hocj, C.3
Pauker, O.4
Stackebrandt, E.5
Wagner-Dobler, I.6
-
27
-
-
0032697215
-
Poles apart: Biodiversity and biogeography of sea ice bacteria
-
Staley JT, Gosink JJ (1999) Poles apart: biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53:189-215
-
(1999)
Annu Rev Microbiol
, vol.53
, pp. 189-215
-
-
Staley, J.T.1
Gosink, J.J.2
-
28
-
-
14544287770
-
Genotypic diversity within a natural coastal bacterioplankton population
-
Thompson JR, Pacocha S, Pharino C, Klepac-Ceraj V and 5 others (2005) Genotypic diversity within a natural coastal bacterioplankton population. Science 307:1311-1313
-
(2005)
Science
, vol.307
, pp. 1311-1313
-
-
Thompson, J.R.1
Pacocha, S.2
Pharino, C.3
Klepac-Ceraj, V.4
-
29
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE and 6 others (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
-
31
-
-
0031737291
-
A natural view of microbial biodiversity within hot spring cyanobacterial mat communities
-
Ward D, Ferris MJ, Nold SC, Bateson MM (1998) A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol Molec Biol Rev 62:1353-1370
-
(1998)
Microbiol Molec Biol Rev
, vol.62
, pp. 1353-1370
-
-
Ward, D.1
Ferris, M.J.2
Nold, S.C.3
Bateson, M.M.4
|