The proteome of the heterocyst cell wall in Anabaena sp. PCC 7120

Biological Chemistry

Volumn 388, Issue 8, 2007, Pages 823-829

  Moslavac, Suncana ^a   Reisinger, Veronika ^a   Berg, Matthias ^b   Mirus, Oliver ^a   Vosyka, Oliver ^a   Plöscher, Matthias ^a   Flores, Enrique ^c   Eichacker, Lutz A ^a   Schleiff, Enrico ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b GeneScan Analytics GmbH   (Germany)

^c UNIVERSITY OF SEVILLE   (Spain)

Author keywords

barrel protein prediction; Anabaena; Heterocyst; Outer membrane; Proteome analysis

Indexed keywords

CELL MEMBRANE PROTEIN; LIPID; PROTEASOME;

AMINO ACID SEQUENCE; ANABAENA; ARTICLE; BACTERIAL CELL WALL; CELL DIFFERENTIATION; CELL ISOLATION; CYST (RESTING STAGE); INTERMEDIATE FILAMENT; LIPID COMPOSITION; NONHUMAN; OPEN READING FRAME; OUTER MEMBRANE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONTENT; PROTEIN EXPRESSION; PROTEOMICS;

ANABAENA; BACTERIAL PROTEINS; CELL MEMBRANE; CELL WALL; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; PROTEIN TRANSPORT; PROTEOME; RECOMBINANT FUSION PROTEINS; SUBCELLULAR FRACTIONS;

ANABAENA; NOSTOC SP. PCC 7120; PROKARYOTA;

EID: 34547515109     PISSN: 14316730     EISSN: 14374315     Source Type: Journal    
DOI: 10.1515/BC.2007.079     Document Type: Article

References (35)

1. Adams, D.G. (2000). Heterocyst formation in cyanobacteria. Curr. Opin. Microbiol. 3, 618-624.
2. Bagos, P.G., Liakopoulos, T.D., and Hamodrakas, J.S. (2004a). Finding beta-barrel outer membrane proteins with a Markov chain model. WSEAS Trans. Biol. Biomed. 2, 186-189.
3. Bagos, P.G., Liakopoulos, T.D., Spyropoulos, I.C., and Hamodrakas, S.J. (2004b). A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins. BMC Bioinformatics 5, 29.
4. Baier, K., Lehmann, H., Stephan, D.P., and Lockau, W. (2004). NblA is essential for phycobilisome degradation in Anabaena sp. strain PCC 7120 but not for development of functional heterocysts. Microbiology 150, 2739-2749.
5. Bendtsen, J.D., Nielsen, H., von Heijne, G., and Brunak, S. (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340, 783-795.
6. Bredemeier, R., Schlegel, T., Ertel, F., Vojta, A., Borissenko, L., Bohnsack, M.T., Groll, M., von Haeseler, A., and Schleiff, E. (2007). Functional and phylogenetic properties of the pore forming β-barrel transporters of the Omp85 family. J. Biol. Chem. 282, 1882-1890.
7. Ehira, S. and Ohmori, M. (2006). NrrA, a nitrogen-responsive response regulator, facilitates heterocyst development in the cyanobacterium Anabaena sp. strain PCC 7120. Mol. Microbiol. 59, 1692-1703.
8. Ehira, S., Ohmori, M., and Sato, N. (2003). Genome-wide expression analysis of the responses to nitrogen deprivation in the heterocyst-forming cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 10, 97-113.
9. Eichacker, L.A., Granvogl, B., Mirus, O., Müller, B.C., Miess, C., and Schleiff, E. (2004). Hiding behind hydrophobicity. Transmembrane segments in mass spectrometry. J. Biol. Chem. 279, 50915-50922.
10. Elhai, J. and Wolk, C.P. (1988). Conjugal transfer of DNA to cyanobacteria. Methods Enzymol. 167, 747-754.
11. Elhai, J. and Wolk, C.P. (1990). Developmental regulation and spatial pattern of expression of the structural genes for nitrogenase in the cyanobacterium Anabaena. EMBO J. 9, 3379-3388.
12. Ertel, F., Mirus, O., Bredemeier, R., Moslavac, S., Becker, T., and Schleiff, E. (2005). The evolutionarily related beta-barrel polypeptide transporters from Pisum sativum and Nostoc PCC7120 contain two distinct functional domains. J. Biol. Chem. 280, 28281-28289.
13. Feilmeier, B.J., Iseminger, G., Schroeder, D., Webber, H., and Phillips, G.J. (2000). Green fluorescent protein functions as a reporter for protein localization in Escherichia coli. J. Bacteriol. 182, 4068-4076.
14. Fiedler, G., Arnold, M., and Maldener, I. (1998). Sequence and mutational analysis of the devBCA gene cluster encoding a putative ABC transporter in the cyanobacterium Anabaena variabilis ATCC 29413. Biochim. Biophys. Acta 1375, 140-143.
15. Flores, E., Herrero, A., Wolk, C.P., and Maldener, I. (2006). Is the periplasm continuous in filamentous multicellular cyanobacteria? Trends Microbiol. 14, 439-443.
16. Gardy, J.L., Laird, M.R., Chen, F., Rey, S., Walsh, C.J., Ester, M., and Brinkman, F.S. (2005). PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21, 617-623.
17. Golden, J.W., Whorff, L.L., and Wiest, D.R. (1991). Independent regulation of nifHDK operon transcription and DNA rearrangement during heterocyst differentiation in the cyanobacterium Anabaena sp. strain PCC 7120. J. Bacteriol. 173, 7098-7105.
18. Herrero, A., Muro-Pastor, A.M., Valladares, A., and Flores, E. (2004). Cellular differentiation and the NtcA transcription factor in filamentous cyanobacteria. FEMS Microbiol. Rev. 28, 469-487.
19. Ignoul, S. and Eggermont, J. (2005). CBS domains: structure, function, and pathology in human proteins. Am. J. Physiol. Cell Physiol. 289, C1369-1378.
20. Jackson, S.E., Craggs, T.D., and Huang, J.R. (2006). Understanding the folding of GFP using biophysical techniques. Expert Rev. Proteomics 3, 545-559.
21. Kaneko, T., Nakamura, Y., Wolk, C.P., Kuritz, T., Sasamoto, S., Watanabe, A., Iriguchi, M., Ishikawa, A., Kawashima, K., Kimura, T., et al. (2001). Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8, 205-213; 227-253.
22. Maldener, I., Hannus, S., and Kammerer, M. (2003) Description of five mutants of the cyanobacterium Anabaena sp. strain PCC 7120 affected in heterocyst differentiation and identification of the transposon-tagged genes. FEMS Microbiol. Lett. 224, 205-213.
23. Martin, W., Rujan, T., Richly, E., Hansen, A., Cornelsen, S., Lins, T., Leister, D., Stoebe, B., Hasegawa, M., and Penny, D. (2002). Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99, 12246-12251.
24. Mirus, O. and Schleiff, E. (2005). Prediction of β-barrel membrane proteins by searching for restricted domains. BMC Bioinformatics 6, 254.
25. Moslavac, S., Bredemeier, R., Mirus, O., Granvogl, B., Eichacker, L.A., and Schleiff, E. (2005a). Proteomic analysis of the outer membrane of Anabaena sp. strain PCC 7120. J. Proteome Res. 4, 1330-1338.
26. Moslavac, S., Mirus, O., Bredemeier, R., Soll, J., von Haeseler, A. and Schleiff, E. (2005b). Conserved pore-forming regions in polypeptide-transporting proteins. FEBS J. 272, 1367-1378.
27. Muro-Pastor, A.M., Olmedo-Verd, E., and Flores, E. (2006). All4312, an NtcA-regulated two-component response regulator in Anabaena sp. strain PCC 7120. FEMS Microbiol. Lett. 256, 171-177.
28. Olmedo-Verd, E., Flores, E., Herrero, A., and Muro-Pastor, A.M. (2005). HetR-dependent and -independent expression of heterocyst-related genes in an Anabaena strain overproducing the NtcA transcription factor. J. Bacteriol. 187, 1985-1991.
29. Olmedo-Verd, E., Muro-Pastor, A.M., Flores, E., and Herrero, A. (2006). Localized induction of the ntcA regulatory gene in developing heterocysts of Anabaena sp. strain PCC 7120. J. Bacteriol. 188, 6694-6699.
30. Omata, T. and Murata, N. (1984). Isolation and characterization of three types of membranes from the cyanobacterium (blue green alga) Synechocystis sp. PCC 6714. Arch. Microbiol. 139, 113-116.
31. Schmitt, S., Prokisch, H., Schlunck, T., Camp, D.G. II, Ahting, U., Waizenegger, T., Scharfe, C., Meitinger, T., Imhof, A., Neupert, W., et al. (2006). Proteome analysis of mitochondrial outer membrane from Neurospora crassa. Proteomics 6, 72-80.
32. Slynn, G.M., Sammons, R.L., Smith, D.A., Moir, A., and Corfe, B.M. (1994). Molecular genetical and phenotypical analysis of the gerM spore germination gene of Bacillus subtilis 168. FEMS Microbiol. Lett. 121, 315-320.
33. Stanier, R.Y. and Cohen-Bazire, G. (1977). Phototrophic prokaryotes: the cyanobacteria. Annu. Rev. Microbiol. 31, 225-274.
34. Thomas, J.D., Daniel, R.A., Errington, J., and Robinson, C. (2001). Export of active green fluorescent protein to the periplasm by the twin-arginine translocase (Tat) pathway in Escherichia coli. Mol. Microbiol. 39, 47-53.
35. Wolk, C.P., Vonshak, A., Kehoe, P., and Elhai, J. (1984). Construction of shuttle vectors capable of conjugative transfer from Escherichia coli to nitrogen-fixing filamentous cyanobacteria. Proc. Natl. Acad. Sci. USA 81, 1561-1565.