Dicot and monocot plants differ in retinoblastoma-related protein subfamilies

Journal of Experimental Botany

Volumn 58, Issue 7, 2007, Pages 1663-1675

  Lendvai, Ágnes ^a   Pettkó Szandtner, Aladár ^a   Csordás Tóth, Éva ^a   Miskolczi, Pál ^a   Horváth, Gábor V ^a   Györgyey, János ^a   Dudits, Dénes ^a  

^a INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

Alfalfa; NAC protein; Protein phosphatase; Retinoblastoma; Rice; Wheat

Indexed keywords

BIOASSAY; CROPS; GENE ENCODING; PLANT CELL CULTURE; PLANTS (BOTANY); RNA; TUMORS;

ALFALFA; PROTEIN PHOSPHATASE; RETINOBLASTOMA; RICE; WHEAT;

PROTEINS;

DICOTYLEDONEAE; EMBRYOPHYTA; MEDICAGO SATIVA; ORYZA SATIVA; TRITICUM AESTIVUM;

MESSENGER RNA; RETINOBLASTOMA PROTEIN; VEGETABLE PROTEIN;

ALFALFA; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BIOLOGY; CHEMISTRY; COMPARATIVE STUDY; GENETICS; GENOME; METABOLISM; MOLECULAR GENETICS; MULTIGENE FAMILY; PHYLOGENY; RICE; SEQUENCE ALIGNMENT; TWO HYBRID SYSTEM; WHEAT;

AMINO ACID SEQUENCE; ARABIDOPSIS; COMPUTATIONAL BIOLOGY; GENOME, PLANT; MEDICAGO SATIVA; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; ORYZA SATIVA; PHYLOGENY; PLANT PROTEINS; RETINOBLASTOMA PROTEIN; RNA, MESSENGER; SEQUENCE ALIGNMENT; TRITICUM; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 34547478813     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erm022     Document Type: Article

References (65)

1. Ach RA, Durfee T, Miller AB, Taranto P, Hanley-Bowdoin L, Zambryski P, Gruissem W. 1997. RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein. Molecular and Cellular Biology 17, 5077-5086.
2. Barrôco RM, Peres A, Droual A-M, et al. 2006. The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice. Plant Physiology 142, 1053-1064.
3. Beemster GTS, De Veylder L, Vercruysse S, West G, Rombaut D, Van Hummelen P, Galichet A, Gruissem W, Inze D, Vuylsteke M. 2005. Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis. Plant Physiology 138, 734-743.
4. Bernards R, Schackleford GM, Gerber MR, et al. 1989. Structure and expression of the murine retinoblastoma gene and characterization of its encoded protein. Proceedings of the National Academy of Sciences, USA 86, 6474-6478.
5. Boehmelt G, Ulrich E, Kurzbauer R, Mellitzer G, Bird A, Zenke M. 1994. Structure and expression of the chicken retinoblastoma gene. Cell Growth and Differentiation 5, 221-230.
6. Boniotti MB, Gutiérrez C. 2001. A cell-cycle-regulated kinase activity phosphorylates plant retinoblastoma protein and contains, in Arabidopsis, a CDKA/cyclin D complex. The Plant Journal 28, 341-350.
7. Brehm A, Kouzarides T. 1999. Retinoblastoma protein meets chromatin. Trends in Biochemical Sciences 24, 142-145.
8. Cannon SB, Sterck L, Rombauts S, et al. 2006. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proceedings of the National Academy of Sciences, USA 103, 14959-14964.
9. Chen M, Presting G, Barbazuk WB, et al. 2002. An integrated physical and genetic map of the rice genome. The Plant Cell 14, 537-545.
10. Chomczynski P, Sacchi N. 1987. Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry 162, 156-159.
11. Claudio PP, Tonini T, Giordano A. 2002. The retinoblastoma family: twins or distant cousins? Genome Biology 3, 3012.
12. Dahl M, Meskiene I, Bogre L, Ha DT, Swoboda I, Hubmann R, Hirt H, Heberle-Bors E. 1995. The D-type alfalfa cyclin gene cycMs4 complements G1 cyclin-deficient yeast and is induced in the G1 phase of the cell cycle. The Plant Cell 7, 1847-1857.
13. den Boer BG, Murray JAH. 2000. Triggering the cell cycle in plants. Trends in Cell Biology 10, 245-250.
14. Destree OH, Lam KT, Peterson-Maduro LJ, Eizema K, Diller L, Gryka MA, Frebourg T, Shibuya E, Friend SH. 1992. Structure and expression of the Xenopus retinoblastoma gene. Developmental Biology 153, 141-149.
15. Du W, Vidal M, Xie JE, Dyson N. 1996. RBF, a novel RB-related gene that regulates E2F activity and interacts with cyclin E in Drosophila. Genes and Development 10, 1206-1218.
16. Durfee T, Feiler HS, Gruissem W. 2000. Retinoblastoma-related proteins in plants: homologues or orthologues of their metazoan counterparts? Plant Molecular Biology 43, 635-642.
17. Dyson N. 1998. The regulation of E2F by pRB-family proteins. Genes and Development 12, 2245-2262.
18. Ewen ME, Xing YG, Lawrence JB, Livingston DM. 1991. Molecular cloning, chromosomal mapping, and expression of the cDNA for p107, a retinoblastoma gene product-related protein. Cell 66, 1155-1164.
19. Fountain MD, Murray JAH, Beck E. 1999. Isolation and characterization of a plant retinoblastoma-related gene from a photoautotrophic cell suspension culture of Chenopodium rubrum L. Plant Physiology 119, 336-363.
20. Felsenstein J. 2002. PHYLIP (Phylogeny Inference Package) Version 3.6a3. Distributed by the author. Seatle: Department of Genetics, University of Washington.
21. Grafi G, Burnett RJ, Helentjaris T, Larkins BA, DeCaprio JA, Sellers WR, Kaelin WG. 1996. A maize cDNA encoding a member of the retinoblastoma protein family: involvement in endoreduplication. Proceedings of the National Academy of Sciences, USA 93, 8962-8967.
22. Granier C, Inzé D, Tardieu F. 2000. Spatial distribution of cell division rate can be deduced from that of p34(cdc2) kinase activity in maize leaves grown at contrasting temperatures and soil water conditions. Plant Physiology 124, 1393-1402.
23. Gutiérrez C. 2000. Geminiviruses and the plant cell cycle. Plant Molecular Biology 43, 763-772.
24. Gutiérrez C, Ramirez-Parra E, Castellano MM, del Pozo JC. 2002. G(1) to S transition: more than a cell cycle engine switch. Current Opinion in Plant Biology 5, 480-486.
25. Ho A, Dowdy SF. 2002. Regulation of G(1) cell-cycle progression by oncogenes and tumor suppressor genes. Current Opinion in Genetics and Development 12, 47-52.
26. Horváth GV, Pettkó-Szandtner A, Nikovics K, Bilgin M, Boulton M, Davies JW, Gutiérrez C, Dudits D. 1998. Prediction of functional regions of the maize streak virus replication-associated proteins by protein-protein interaction analysis. Plant Molecular Biology 38, 699-712.
27. Huntley R, Healy S, Freeman D, et al. 1998. The maize retinoblastoma protein homologue ZmRb-1 is regulated during maize leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins. Plant Molecular Biology 37, 155-169.
28. Huntley RP, Murray JAH. 1999. The plant cell cycle. Current Opinion in Plant Biology 2, 440-446.
29. Huppi K, Siwarski D, Mock BA, Dosik J, Hamel PA. 1996. Molecular cloning, chromosomal mapping, and expression of the mouse p107 gene. Mammalian Genome 7, 353-355.
30. James P, Halladay J, Graig EA. 1996. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144, 1425-1436.
31. Jiang Z, Zacksenhaus E, Gallie BL, Philips RA. 1997. The retinoblastoma gene family is differentially expressed during embryogenesis. Oncogene 14, 1789-1797.
32. Keller SA, Ullah Z, Buckley MS, William Henry R, Arnosti DN. 2005. Distinct developmental expression of Drosophila retinoblastoma factors. Gene Expression Patterns 5, 411-421.
33. Kong LJ, Orozco BM, Roe JL, et al. 2000. A geminivirus replication protein interacts with the retinoblastoma protein through a novel domain to determine symptoms and tissue specificity of infection in plants. EMBO Journal 19, 3485-3495.
34. Lee WH, Bookstein R, Hong F, Young LJ, Shew JY, Lee EY. 1987. Human retinoblastoma susceptibility gene: cloning, identification, and sequence. Science 235, 1394-1399.
35. ΔΔCt method. Methods 25, 402-408.
36. Mayol X, Grana X, Baldi A, Sang N, Hu Q, Giordano A. 1993. Cloning of a new member of the retinoblastoma gene family (pRb2) which binds to the E1A transforming domain. Oncogene 8, 2561-2566.
37. Nakagami H, Kawamura K, Sugisaka K, Sekine M, Shinmyo A. 2002. Phosphorylation of retinoblastoma-related protein by the cyclin D/cyclin-dependent kinase complex is activated at the G1/S phase transition in tobacco. The Plant Cell 14, 1847-1857.
38. Nakagami H, Sekine M, Murakami H, Shinmyo A. 1999. Tobacco retinoblastoma-related protein phosphorylated by a distinct cyclin-dependent kinase complex with Cdc2/cyclin D in vitro. The Plant Journal 18, 243-252.
39. Nelson T, Langdale JA. 1989. Patterns of leaf development in C4 plants. The Plant Cell 1, 3-13.
40. Olsen AN, Ernst HA, Leggio LL, Skriver K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends in Plant Science 10, 79-87.
41. Park JA, Ahn JW, Kim YK, Kim SJ, Kim JK, Kim WT, Pai HS. 2005. Retinoblastoma protein regulates cell proliferation, differentiation, and endoreduplication in plants. The Plant Journal 42, 153-163.
42. Pertile P, Baldi A, De Luca A, Bagella L, Virgilio L, Pisano MM, Giordano A. 1995. Molecular cloning, expression, and developmental characterization of the murine retinoblastoma-related gene Rb2/p130. Cell Growth and Differentiation 6, 1659-1664.
43. Robbens S, Khadaroo B, Camasses A, Derelle E, Ferraz C, Inze D, Van de Peer Y, Moreau H. 2005. Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Molecular Biology and Evolution 22, 589-597.
44. Rossi V, Locatelli S, Lanzanova C, Boniotti B, Varotto S, Pipal A, Goralik-Schramel M, Lusser A, Gatz C, Gutiérrez C. 2003. A maize histone deacetylase and retinoblastoma-related protein physically interact and cooperate in repressing gene transcription. Plant Molecular Biology 51, 401-413.
45. Rossi V, Varotto S. 2002. Insights into the G1/S transition in plants. Planta 215, 345-356.
46. Roudier F, Fedorova E, Györgyey J, Fehér A, Brown S, Kondorosi A, Kondorosi E. 2000. Cell cycle function of a Medicago sativa A2-type cyclin interacting with a PSTAIRE-type cyclin-dependent kinase and a retinoblastoma protein. The Plant Journal 23, 73-78.
47. Rutledge RG, Cote C. 2003. Mathematics of quantitative kinetics PCR and the application of standard curves. Nucleic Acids Research 31, e93.
48. Sabelli PA, Dante RA, Leiva-Neto JT, Jung R, Gordon-Kamm WJ, Larkins BA. 2005. RBR3, a member of the retinoblastoma-related family from maize, is regulated by the RBR1/E2F pathway. Proceedings of the National Academy of Sciences, USA 102, 13005-13012.
49. Sabelli PA, Larkins BA. 2006. Grass like mammals? Redundancy and compensatory regulation within the retinoblastoma protein family. Cell Cycle 5, 352-355.
50. Savouré A, Fehér A, Kalo P, Petrovics G, Csanádi G, Szécsi J, Kiss G, Brown S, Kondorosi A, Kondorosi E. 1995. Isolation of a full-length mitotic cyclin cDNA clone CycIIMs from Medicago sativa: chromosomal mapping and expression. Plant Molecular Biology 27, 1059-1070.
51. Sawada Y, Nomura H, Endo Y, Umeki K, Fujita T, Ohtaki S, Fujinaga K. 1997. Cloning and characterization of the rat p130, a member of the retinoblastoma gene family. Biochimica et Biophysica Acta 1361, 20-27.
52. Schiestl RH, Gietz D. 1989. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Current Genetetics 16, 339-346.
53. Seki M, Narusaka M, Kamiya A, et al. 2002. Functional annotation of a full-length Arabidopsis cDNA collection. Science 296, 141-145.
54. Soni R, Carmichael JP, Shah ZH, Murray JAH. 1995. A family of cyclin-D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif. The Plant Cell 7, 85-103.
55. Stevaux O, Dimova D, Frolov MV, Taylor-Harding B, Morris E, Dyson N. 2002. Distinct mechanisms of E2F regulation by Drosophila RBF1 and RBF2. EMBO Journal 16, 4927-4937.
56. Umen JG, Goodenough UW. 2001. Control of cell division by a retinoblastoma protein homolog in Chlamydomonas. Genes and Development 15, 1652-1661.
57. Voorhoeve PM, Hijmans ME, Bernards R. 1999. Functional interaction between a novel protein phosphatase 2A regulatory subunit, PR59, and the retinoblastoma-related p107 protein. Oncogene 18, 515-524.
58. Weinberg RA. 1995. The retinoblastoma protein and cell cycle control. Cell 81, 323-330.
59. Xiao B, Spencer J, Clements A, Ali-Khan N, Mittnacht S, Broceno C, Burghammer M, Perrakis A, Marmorstein R, Gamblin S. 2003. Crystal structure of the retinoblastoma suppressor protein bound to E2F and the molecular basis of its regulation. Proceedings of the National Academy of Sciences, USA 100, 2363-2368.
60. Xie Q, Sanz-Burgos AP, Hannon GJ, Gutierrez C. 1996. Plant cells contain a novel member of the retinoblastoma family of growth regulatory proteins. EMBO Journal 15, 4900-4908.
61. Xie Q, Suárez-López P, Gutiérrez C. 1995. Identification and analysis of a retinoblastoma binding motif in the replication protein of a plant DNA virus: requirement for efficient viral DNA replication. EMBO Journal 14, 4073-4082.
62. Yan Y, Mumby MC. 1999. Distinct roles for PP1 and PP2A in phosphorylation of the retinoblastoma protein. Journal of Biological Chemistry 274, 31917-31924.
63. Zamora AB, Scott KJ. 1983. Callus formation and plant regeneration from wheat leaves. Plant Science Letters 29, 183-189.
64. Zhang HS, Dean DC. 2001. RB-mediated chromatin structure regulation and transcriptional repression. Oncogene 20, 3134-3138.
65. Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W. 2004. GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox. Plant Physiology 136, 2621-2632.