-
1
-
-
8344282761
-
Kernelization algorithms for the vertex cover problem: Theory and experiments
-
New Orleans, Louisiana
-
F. N. Abu-Khzam, R. L. Collins, M. R. Fellows, M. A. Langston, W. H. Suters, and C. T. Symons. Kernelization algorithms for the vertex cover problem: Theory and experiments. In Proceedings, Workshop on Algorithm Engineering and Experiments, New Orleans, Louisiana, 2004.
-
(2004)
Proceedings, Workshop on Algorithm Engineering and Experiments
-
-
Abu-Khzam, F.N.1
Collins, R.L.2
Fellows, M.R.3
Langston, M.A.4
Suters, W.H.5
Symons, C.T.6
-
3
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
O. Alter, P. O. Brown, and D. Botstein. Singular value decomposition for genome-wide expression data processing and modeling. Proceedings of the National Academy of Sciences, 97:10101-10106, 2000.
-
(2000)
Proceedings of the National Academy of Sciences
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
4
-
-
25844464750
-
Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks
-
N. E. Baldwin, E. J. Chesler, S. Kirov, M. A. Langston, J. R. Snoddy, R. W. Williams, and B. Zhang. Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks. Journal of Biomedicine and Biotechnology, 2:172-180, 2005.
-
(2005)
Journal of Biomedicine and Biotechnology
, vol.2
, pp. 172-180
-
-
Baldwin, N.E.1
Chesler, E.J.2
Kirov, S.3
Langston, M.A.4
Snoddy, J.R.5
Williams, R.W.6
Zhang, B.7
-
5
-
-
0032837739
-
Down-regulation of striatin, a neuronal calmodulin-binding protein, impairs rat locomotor activity
-
M. Bartoli, J. P. Ternaux, C. Forni, P. Portalier, P. Salin, M. Amalric, and A. Monneron. Down-regulation of striatin, a neuronal calmodulin-binding protein, impairs rat locomotor activity. Journal of Neurobiology, 40:234-243, 1999.
-
(1999)
Journal of Neurobiology
, vol.40
, pp. 234-243
-
-
Bartoli, M.1
Ternaux, J.P.2
Forni, C.3
Portalier, P.4
Salin, P.5
Amalric, M.6
Monneron, A.7
-
6
-
-
2442626585
-
The serotonin 5-ht2a and 5-ht2c receptors interact with specific sets of pdz proteins
-
C. Becamel, S. Gavarini, B. Chanrion, G. Alonso, N. Galeotti, A. Dumuis, J. Bockaert, and P. Marin. The serotonin 5-ht2a and 5-ht2c receptors interact with specific sets of pdz proteins. Journal of Biological Chemistry, 279:20257-20266, 2004.
-
(2004)
Journal of Biological Chemistry
, vol.279
, pp. 20257-20266
-
-
Becamel, C.1
Gavarini, S.2
Chanrion, B.3
Alonso, G.4
Galeotti, N.5
Dumuis, A.6
Bockaert, J.7
Marin, P.8
-
7
-
-
3142557753
-
E-cast: A data mining algorithm for gene expression data
-
Edmonton, Alberta, Canada
-
A. Bellaachia, D. Portnoy, Y. Chen, and A. G. Elkahloun. E-cast: A data mining algorithm for gene expression data. In Proceedings, Workshop on Data Mining in Bioinformatics, Edmonton, Alberta, Canada, 2002.
-
(2002)
Proceedings, Workshop on Data Mining in Bioinformatics
-
-
Bellaachia, A.1
Portnoy, D.2
Chen, Y.3
Elkahloun, A.G.4
-
8
-
-
0033726356
-
Tissue classification with gene expression profiles
-
A. Ben-Dor, L. Bruhn, N. Friedman, I. Nachman, M. Schummer, and Z. Yakhini. Tissue classification with gene expression profiles. Journal of Computational Biology, pages 54-64, 2000.
-
(2000)
Journal of Computational Biology
, pp. 54-64
-
-
Ben-Dor, A.1
Bruhn, L.2
Friedman, N.3
Nachman, I.4
Schummer, M.5
Yakhini, Z.6
-
9
-
-
0032728081
-
Clustering gene expression patterns
-
A. Ben-Dor, R. Shamir, and Z. Yakhini. Clustering gene expression patterns. Journal of Computational Biology, 6(3/4):281-297, 1999.
-
(1999)
Journal of Computational Biology
, vol.6
, Issue.3-4
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
10
-
-
34547478172
-
-
I. Bomze, M. Budinich, P. Pardalos, and M. Pelillo. The maximum clique problem. In D. Z. Du and P. M. Pardalos, editors, Handbook of Combinatorial Optimization, 4. Kluwer Academic Publishers, 1999.
-
I. Bomze, M. Budinich, P. Pardalos, and M. Pelillo. The maximum clique problem. In D. Z. Du and P. M. Pardalos, editors, Handbook of Combinatorial Optimization, volume 4. Kluwer Academic Publishers, 1999.
-
-
-
-
11
-
-
13444306165
-
The landscape of genetic complexity across 5,700 gene expression traits in yeast
-
R. B. Brem and L. Kruglyak. The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proceedings of the National Academy of Sciences, 102:1572-1577, 2005.
-
(2005)
Proceedings of the National Academy of Sciences
, vol.102
, pp. 1572-1577
-
-
Brem, R.B.1
Kruglyak, L.2
-
12
-
-
0037177625
-
Genetic dissection of transcriptional regulation in budding yeast
-
R. B. Brem, G. Yvert, R. Clinton, and L. Kruglyak. Genetic dissection of transcriptional regulation in budding yeast. Science, 296:752-755, 2002.
-
(2002)
Science
, vol.296
, pp. 752-755
-
-
Brem, R.B.1
Yvert, G.2
Clinton, R.3
Kruglyak, L.4
-
14
-
-
0034710924
-
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
-
A. J. Butte, P. Tamayo, D. Slonim, T. R. Golub, and I. S. Kohane. Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. Proceedings of the National Academy of Sciences, 97:12182-12186, 2000.
-
(2000)
Proceedings of the National Academy of Sciences
, vol.97
, pp. 12182-12186
-
-
Butte, A.J.1
Tamayo, P.2
Slonim, D.3
Golub, T.R.4
Kohane, I.S.5
-
15
-
-
0032544613
-
A tripartite protein complex with the potential to couple synaptic vesicle exocytosis to cell adhesion in brain
-
S. Butz, M. Okamoto, and T. C. Sudhof. A tripartite protein complex with the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Cell, 94:773-782, 1998.
-
(1998)
Cell
, vol.94
, pp. 773-782
-
-
Butz, S.1
Okamoto, M.2
Sudhof, T.C.3
-
16
-
-
20144383240
-
-
L. Bystrykh, E. Weersing, B. Dontje, S. Sutton, M. T. Pletcher, T. Wiltshire, A. Su, E. Vellenga, J. Wang, K. F. Manly, L. Lu, E. J. Chesler, R. Alberts, R. C. Jansen, R. W. Williams, M. P. Cooke, and G. d. Haan. Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nature Genetics, 37:225-232, 2005.
-
L. Bystrykh, E. Weersing, B. Dontje, S. Sutton, M. T. Pletcher, T. Wiltshire, A. Su, E. Vellenga, J. Wang, K. F. Manly, L. Lu, E. J. Chesler, R. Alberts, R. C. Jansen, R. W. Williams, M. P. Cooke, and G. d. Haan. Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nature Genetics, 37:225-232, 2005.
-
-
-
-
18
-
-
20144386111
-
Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function
-
E. J. Chesler, L. Lu, S. Shou, Y. Qu, J. Gu, J. Wang, H. C. Hsu, J. D. Mountz, N. E. Baldwin, M. A. Langston, J. B. Hogenesch, D. W. Threadgill, K. F. Manly, and R. W. Williams. Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nature Genetics, 37:233-242, 2005.
-
(2005)
Nature Genetics
, vol.37
, pp. 233-242
-
-
Chesler, E.J.1
Lu, L.2
Shou, S.3
Qu, Y.4
Gu, J.5
Wang, J.6
Hsu, H.C.7
Mountz, J.D.8
Baldwin, N.E.9
Langston, M.A.10
Hogenesch, J.B.11
Threadgill, D.W.12
Manly, K.F.13
Williams, R.W.14
-
19
-
-
2142652098
-
Webqtl: Rapid exploratory analysis of gene expression and genetic networks for brain and behavior
-
E. J. Chesler, L. Lu, J. Wang, R. W. Williams, and K. F. Manly. Webqtl: Rapid exploratory analysis of gene expression and genetic networks for brain and behavior. Nature Neuroscience, 7:486-486, 2004.
-
(2004)
Nature Neuroscience
, vol.7
, pp. 486-486
-
-
Chesler, E.J.1
Lu, L.2
Wang, J.3
Williams, R.W.4
Manly, K.F.5
-
20
-
-
0242353110
-
Genetic correlates of gene expression in recombinant inbred strains: A relational model system to explore neurobehavioral phenotypes
-
E. J. Chesler, J. Wang, L. Lu, Y. Qu, K. F. Manly, and R. W. Williams. Genetic correlates of gene expression in recombinant inbred strains: a relational model system to explore neurobehavioral phenotypes. Neuroinformatics, 1:343-357, 2003.
-
(2003)
Neuroinformatics
, vol.1
, pp. 343-357
-
-
Chesler, E.J.1
Wang, J.2
Lu, L.3
Qu, Y.4
Manly, K.F.5
Williams, R.W.6
-
22
-
-
14644441018
-
-
G. A. Churchill, D. C. Airey, H. Allayee, J. M. Angel, A. D. Attie, J. Beatty, W. D. Beavis, J. K. Belknap, B. Bennett, W. Berrettini, A. Bleich, M. Bogue, K. W. Broman, K. J. Buck, E. Buckler, M. Burmeister, E. J. Chesler, J. M. Cheverud, S. Clapcote, M. N. Cook, R. D. Cox, J. C. Crabbe, W. E. Crusio, A. Darvasi, C. F. Deschepper, R. W. Doerge, C. R. Farber, J. Forejt, D. Gaile, S. J. Garlow, H. Geiger, H. Gershenfeld, T. Gordon, J. Gu, W. Gu, G. d. Haan, N. L. Hayes, C. Heller, H. Himmelbauer, R. Hitzemann, K. Hunter, H. C. Hsu, F. A. Iraqi, B. Ivandic, H. J. Jacob, R. C. Jansen, K. J. Jepsen, D. K. Johnson, T. E. Johnson, C. Kempermann, C. Kendziorski, M. Kotb, R. F. Kooy, B. Llamas, F. Lammert, J. M. Lassalle, P. R. Lowenstein, A. L. L. Lu, K. F. Manly, R. Marcucio, D. Matthews, J. F. Medrano, D. R. Miller, C. Mittleman, B. A. Mock, J. S. Mogil, X. Montagutelli, G. Morahan, D. C. Morris, R. Mott, J. H. Nadeau, H. Nagase, R. S. Nowakowski, B. F. O'Hara, A. V. Osadchuk, C. P. Page, A
-
G. A. Churchill, D. C. Airey, H. Allayee, J. M. Angel, A. D. Attie, J. Beatty, W. D. Beavis, J. K. Belknap, B. Bennett, W. Berrettini, A. Bleich, M. Bogue, K. W. Broman, K. J. Buck, E. Buckler, M. Burmeister, E. J. Chesler, J. M. Cheverud, S. Clapcote, M. N. Cook, R. D. Cox, J. C. Crabbe, W. E. Crusio, A. Darvasi, C. F. Deschepper, R. W. Doerge, C. R. Farber, J. Forejt, D. Gaile, S. J. Garlow, H. Geiger, H. Gershenfeld, T. Gordon, J. Gu, W. Gu, G. d. Haan, N. L. Hayes, C. Heller, H. Himmelbauer, R. Hitzemann, K. Hunter, H. C. Hsu, F. A. Iraqi, B. Ivandic, H. J. Jacob, R. C. Jansen, K. J. Jepsen, D. K. Johnson, T. E. Johnson, C. Kempermann, C. Kendziorski, M. Kotb, R. F. Kooy, B. Llamas, F. Lammert, J. M. Lassalle, P. R. Lowenstein, A. L. L. Lu, K. F. Manly, R. Marcucio, D. Matthews, J. F. Medrano, D. R. Miller, C. Mittleman, B. A. Mock, J. S. Mogil, X. Montagutelli, G. Morahan, D. C. Morris, R. Mott, J. H. Nadeau, H. Nagase, R. S. Nowakowski, B. F. O'Hara, A. V. Osadchuk, C. P. Page, A. Paigen, K. Paigen, A. A. Palmer, H. J. Pan, L. Peltonen-Palotie, J. Peirce, D. Pomp, M. Pravenec, D. R. Prows, Z. Qi, R. H. Reeves, J. Roder, G. D. Rosen, E. E. Schadt, L. C. Schalkwyk, Z. Seltzer, K. Shimomura, S. Shou, M. J. Sillanpaa, L. D. Siracusa, H. W. Snoeck, J. L. Spearow, K. Svenson, L. M. Tarantino, D. Threadgill, L. A. Toth, W. Valdar, F. P. d. Villena, C. Warden, S. Whatley, R. W. Williams, T. Wiltshire, N. Yi, D. Zhang, M. Zhang, and F. Zou. The collaborative cross, a community resource for the genetic analysis of complex traits. Nature Genetics, 36:1133-1137, 2004.
-
-
-
-
23
-
-
0036245218
-
Mapping and analysis of quantitative trait loci in experimental populations
-
R. W. Doerge. Mapping and analysis of quantitative trait loci in experimental populations. Nature Reviews Genetics, 3:43-52, 2002.
-
(2002)
Nature Reviews Genetics
, vol.3
, pp. 43-52
-
-
Doerge, R.W.1
-
26
-
-
10244255213
-
Biologically valid linear factor models of gene expression
-
M. Girolami and R. Breitling. Biologically valid linear factor models of gene expression. Bioinformatics, 20:3021-3033, 2004.
-
(2004)
Bioinformatics
, vol.20
, pp. 3021-3033
-
-
Girolami, M.1
Breitling, R.2
-
27
-
-
0000950204
-
Cluster analysis and mathematical programming
-
P. Hansen and B. Jaumard. Cluster analysis and mathematical programming. Mathematical Programming, 79(1-3): 191-215, 1997.
-
(1997)
Mathematical Programming
, vol.79
, Issue.1-3
, pp. 191-215
-
-
Hansen, P.1
Jaumard, B.2
-
28
-
-
0032645274
-
An algorithm for clustering cDNAs for gene expression analysis
-
Lyon, France
-
E. Hartuv, A. Schmitt, J. Lange, S. Meier-Ewert, H. Lehrachs, and R. Shamir. An algorithm for clustering cDNAs for gene expression analysis. In Proceedings, RECOMB, Lyon, France, 1999.
-
(1999)
Proceedings, RECOMB
-
-
Hartuv, E.1
Schmitt, A.2
Lange, J.3
Meier-Ewert, S.4
Lehrachs, H.5
Shamir, R.6
-
29
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed genes
-
L. J. Heyer, S. Kruglyak, and S. Yooseph. Exploring expression data: Identification and analysis of coexpressed genes. Genome Research, 9:1106-1115, 1999.
-
(1999)
Genome Research
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
Kruglyak, S.2
Yooseph, S.3
-
30
-
-
20144377218
-
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
-
N. Hubner, C. A. Wallace, H. Zimdahl, E. Petretto, H. Schulz, F. Maciver, M. Mueller, O. Hummel, J. Monti, V. Zidek, A. Musilova, V. Kren, H. Causton, L. Game, G. Born, S. Schmidt, A. Muller, S. A. Cook, T. W. Kurtz, J. Whittaker, M. Pravenec, and T. J. Aitman. Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nature Genetics, 37:243-253, 2005.
-
(2005)
Nature Genetics
, vol.37
, pp. 243-253
-
-
Hubner, N.1
Wallace, C.A.2
Zimdahl, H.3
Petretto, E.4
Schulz, H.5
Maciver, F.6
Mueller, M.7
Hummel, O.8
Monti, J.9
Zidek, V.10
Musilova, A.11
Kren, V.12
Causton, H.13
Game, L.14
Born, G.15
Schmidt, S.16
Muller, A.17
Cook, S.A.18
Kurtz, T.W.19
Whittaker, J.20
Pravenec, M.21
Aitman, T.J.22
more..
-
31
-
-
33750837124
-
A combinatorial approach to the analysis of differential gene expression data: The use of graph algorithms for disease prediction and screening
-
J. S. Shoemaker and S. M. Lin, editors, Springer Verlag
-
M. A. Langston, L. Lan, X. Peng, N. E. Baldwin, C. T. Symons, B. Zhang, and J. R. Snoddy. A combinatorial approach to the analysis of differential gene expression data: The use of graph algorithms for disease prediction and screening. In J. S. Shoemaker and S. M. Lin, editors, Methods of Microarray Data Analysis IV. Springer Verlag, 2005.
-
(2005)
Methods of Microarray Data Analysis IV
-
-
Langston, M.A.1
Lan, L.2
Peng, X.3
Baldwin, N.E.4
Symons, C.T.5
Zhang, B.6
Snoddy, J.R.7
-
32
-
-
33751041220
-
Innovative computational methods for transcriptomic data analysis
-
Dijon, France, accepted for publication
-
M. A. Langston, A. D. Perkins, A. M. Saxton, J. A. Scharff, and B. H. Voy. Innovative computational methods for transcriptomic data analysis. In Proceedings, ACM Symposium on Applied Computing, Dijon, France, 2006, accepted for publication.
-
(2006)
Proceedings, ACM Symposium on Applied Computing
-
-
Langston, M.A.1
Perkins, A.D.2
Saxton, A.M.3
Scharff, J.A.4
Voy, B.H.5
-
33
-
-
27744476660
-
Genetical genomics: Combining genetics with gene expression analysis
-
J. Li and M. Burmeister. Genetical genomics: Combining genetics with gene expression analysis. Human Molecular Genetics, 14:163-169, 2005.
-
(2005)
Human Molecular Genetics
, vol.14
, pp. 163-169
-
-
Li, J.1
Burmeister, M.2
-
34
-
-
0032805974
-
Overview of qtl mapping software and introduction to map manager qt
-
K. F. Manly and J. M. Olson. Overview of qtl mapping software and introduction to map manager qt. Mammalian Genome, 10:327-334, 1999.
-
(1999)
Mammalian Genome
, vol.10
, pp. 327-334
-
-
Manly, K.F.1
Olson, J.M.2
-
35
-
-
25444501564
-
A new set of bxd recombinant inbred lines from advanced intercross populations in mice
-
J. L. Peirce, L. Lu, J. Gu, L. M. Silver, and R. W. Williams. A new set of bxd recombinant inbred lines from advanced intercross populations in mice. BMC Genetics, 5:7, 2004.
-
(2004)
BMC Genetics
, vol.5
, pp. 7
-
-
Peirce, J.L.1
Lu, L.2
Gu, J.3
Silver, L.M.4
Williams, R.W.5
-
36
-
-
0037456823
-
Genetics of gene expression surveyed in maize, mouse and man
-
E. E. Schadt, S. A. Monks, T. A. Drake, A. J. Lusis, N. Che, V. Colinayo, T. G. Ruff, S. B. Milligan, J. R. Lamb, G. Cavet, P. S. Linsley, M. Mao, R. B. Stoughton, and S. H. Friend. Genetics of gene expression surveyed in maize, mouse and man. Nature, 422:297-302, 2003.
-
(2003)
Nature
, vol.422
, pp. 297-302
-
-
Schadt, E.E.1
Monks, S.A.2
Drake, T.A.3
Lusis, A.J.4
Che, N.5
Colinayo, V.6
Ruff, T.G.7
Milligan, S.B.8
Lamb, J.R.9
Cavet, G.10
Linsley, P.S.11
Mao, M.12
Stoughton, R.B.13
Friend, S.H.14
-
37
-
-
0036899286
-
From patterns to pathways: Gene expression data analysis comes of age
-
D. K. Slonim. From patterns to pathways: gene expression data analysis comes of age. Nature, 32:502-508, 2002.
-
(2002)
Nature
, vol.32
, pp. 502-508
-
-
Slonim, D.K.1
-
38
-
-
14344263352
-
Distributed robustness versus redundancy as causes of mutational robustness
-
A. Wagner. Distributed robustness versus redundancy as causes of mutational robustness. Bioessays, 27:176-188, 2005.
-
(2005)
Bioessays
, vol.27
, pp. 176-188
-
-
Wagner, A.1
-
39
-
-
33845448553
-
Genome-scale computational approaches to memory-intensive applications in systems biology
-
Seattle, Washington
-
Y. Zhang, F. N. Abu-Khzam, N. E. Baldwin, E. J. Chesler, M. A. Langston, and N. F. Samatova. Genome-scale computational approaches to memory-intensive applications in systems biology. In Proceedings, Supercomputing, Seattle, Washington, 2005.
-
(2005)
Proceedings, Supercomputing
-
-
Zhang, Y.1
Abu-Khzam, F.N.2
Baldwin, N.E.3
Chesler, E.J.4
Langston, M.A.5
Samatova, N.F.6
|