-
1
-
-
0033033183
-
The proteasome
-
Bochtler M., Ditzel L., Groll M., Hartmann C., Huber R. The proteasome. Annu. Rev. Biophys. Biomol. Struct. 28:1999;295-317.
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 295-317
-
-
Bochtler, M.1
Ditzel, L.2
Groll, M.3
Hartmann, C.4
Huber, R.5
-
2
-
-
0034677361
-
The structures of HslU and the ATP-dependent protease HslU-HslV
-
Bochtler M., Hartmann C., Song H.K., Bourenkov G.P., Bartunik H.D., Huber R. The structures of HslU and the ATP-dependent protease HslU-HslV. Nature. 403:2000;800-805.
-
(2000)
Nature
, vol.403
, pp. 800-805
-
-
Bochtler, M.1
Hartmann, C.2
Song, H.K.3
Bourenkov, G.P.4
Bartunik, H.D.5
Huber, R.6
-
3
-
-
0035290730
-
Antigen processing by the proteasome
-
Kloetzel P.M. Antigen processing by the proteasome. Nature Rev. Mol. Cell. Biol. 2:2001;179-187.
-
(2001)
Nature Rev. Mol. Cell. Biol.
, vol.2
, pp. 179-187
-
-
Kloetzel, P.M.1
-
4
-
-
0030897031
-
Structure of 20 S proteasome from yeast at 2.4 Å resolution
-
Groll M., Ditzel L., Lowe J., Stock D., Bochtler M., Bartunik H.D., Huber R. Structure of 20 S proteasome from yeast at 2.4 Å resolution. Nature. 386:1997;463-471.
-
(1997)
Nature
, vol.386
, pp. 463-471
-
-
Groll, M.1
Ditzel, L.2
Lowe, J.3
Stock, D.4
Bochtler, M.5
Bartunik, H.D.6
Huber, R.7
-
5
-
-
0035012982
-
STRAP: Editor for STRuctural Alignments of Proteins
-
Gille C., Frömmel C. STRAP: editor for STRuctural Alignments of Proteins. Bioinformatics. 17:2001;377-378.
-
(2001)
Bioinformatics
, vol.17
, pp. 377-378
-
-
Gille, C.1
Frömmel, C.2
-
6
-
-
0027445907
-
Sequence analysis of four new heat-shock genes constituting the hslTS/ibpAB and hslVU operons in Escherichia coli
-
Chuang S.E., Burland V., Plunkett G., Daniels D.L., Blattner F.R. Sequence analysis of four new heat-shock genes constituting the hslTS/ibpAB and hslVU operons in Escherichia coli. Gene. 134:1993;1-6.
-
(1993)
Gene
, vol.134
, pp. 1-6
-
-
Chuang, S.E.1
Burland, V.2
Plunkett, G.3
Daniels, D.L.4
Blattner, F.R.5
-
7
-
-
0030462757
-
Identification and characterization of HslV HslU (ClpQ ClpY) proteins involved in overall proteolysis of misfolded proteins in Escherichia coli
-
Missiakas D., Schwager F., Betton J.M., Georgopoulos C., Raina S. Identification and characterization of HslV HslU (ClpQ ClpY) proteins involved in overall proteolysis of misfolded proteins in Escherichia coli. EMBO J. 15:1996;6899-6909.
-
(1996)
EMBO J.
, vol.15
, pp. 6899-6909
-
-
Missiakas, D.1
Schwager, F.2
Betton, J.M.3
Georgopoulos, C.4
Raina, S.5
-
8
-
-
0001588962
-
Purification and characterization of the heat shock proteins HslV and HslU that form a new ATP-dependent protease in Escherichia coli
-
Yoo S.J., Seol J.H., Shin D.H., Rohrwild M., Kang M.S., Tanaka K., et al. Purification and characterization of the heat shock proteins HslV and HslU that form a new ATP-dependent protease in Escherichia coli. J. Biol. Chem. 271:1996;14035-14040.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 14035-14040
-
-
Yoo, S.J.1
Seol, J.H.2
Shin, D.H.3
Rohrwild, M.4
Kang, M.S.5
Tanaka, K.6
-
9
-
-
0029328494
-
The first characterization of a eubacterial proteasome: The 20 S complex of Rhodococcus
-
Tamura T., Nagy I., Lupas A., Lottspeich F., Cejka Z., Schoofs G., et al. The first characterization of a eubacterial proteasome: the 20 S complex of Rhodococcus. Curr. Biol. 5:1995;766-774.
-
(1995)
Curr. Biol.
, vol.5
, pp. 766-774
-
-
Tamura, T.1
Nagy, I.2
Lupas, A.3
Lottspeich, F.4
Cejka, Z.5
Schoofs, G.6
-
10
-
-
0033625030
-
PA28alphabeta double and PA28beta single transfectant mouse B8 cell lines reveal enhanced presentation of a mouse cytomegalovirus (MCMV) pp89 MHC class I epitope
-
Stohwasser R., Soza A., Eggers M., Koszinowski U.H., Kloetzel P.M. PA28alphabeta double and PA28beta single transfectant mouse B8 cell lines reveal enhanced presentation of a mouse cytomegalovirus (MCMV) pp89 MHC class I epitope. Mol. Immunol. 37:2000;13-19.
-
(2000)
Mol. Immunol.
, vol.37
, pp. 13-19
-
-
Stohwasser, R.1
Soza, A.2
Eggers, M.3
Koszinowski, U.H.4
Kloetzel, P.M.5
-
11
-
-
0033766480
-
A gated channel into the proteasome core particle
-
Groll M., Bajorek M., Kohler A., Moroder L., Rubin D.M., Huber R., et al. A gated channel into the proteasome core particle. Nature Struct. Biol. 7:2000;1062-1067.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 1062-1067
-
-
Groll, M.1
Bajorek, M.2
Kohler, A.3
Moroder, L.4
Rubin, D.M.5
Huber, R.6
-
12
-
-
0030444320
-
Proteases and their targets in Escherichia coli
-
Gottesman S. Proteases and their targets in Escherichia coli. Annu. Rev. Genet. 30:1996;465-506.
-
(1996)
Annu. Rev. Genet.
, vol.30
, pp. 465-506
-
-
Gottesman, S.1
-
13
-
-
0033614454
-
Species variation in ATP-dependent protein degradation: Protease profiles differ between mycobacteria and protease functions differ between Mycobacterium smegmatis and Escherichia coli
-
Knipfer N., Seth A., Roudiak S.G., Shrader T.E. Species variation in ATP-dependent protein degradation: protease profiles differ between mycobacteria and protease functions differ between Mycobacterium smegmatis and Escherichia coli. Gene. 231:1999;95-104.
-
(1999)
Gene
, vol.231
, pp. 95-104
-
-
Knipfer, N.1
Seth, A.2
Roudiak, S.G.3
Shrader, T.E.4
-
14
-
-
0030613795
-
Synergistic roles of HslVU and other ATP-dependent proteases in controlling in vivo turnover of sigma32 and abnormal proteins in Escherichia coli
-
Kanemori M., Nishihara K., Yanagi H., Yura T. Synergistic roles of HslVU and other ATP-dependent proteases in controlling in vivo turnover of sigma32 and abnormal proteins in Escherichia coli. J. Bacteriol. 179:1997;7219-7225.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7219-7225
-
-
Kanemori, M.1
Nishihara, K.2
Yanagi, H.3
Yura, T.4
-
15
-
-
0033016759
-
Redundant in vivo proteolytic activities of Escherichia coli Lon and the ClpYQ (HslUV) protease
-
Wu W.F., Zhou Y., Gottesman S. Redundant in vivo proteolytic activities of Escherichia coli Lon and the ClpYQ (HslUV) protease. J. Bacteriol. 181:1999;3681-3687.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3681-3687
-
-
Wu, W.F.1
Zhou, Y.2
Gottesman, S.3
-
17
-
-
0032509105
-
Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
-
Park J., Karplus K., Barrett C., Hughey R., Haussler D., Hubbard T., Chothia C. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J. Mol. Biol. 284:1998;1201-1210.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1201-1210
-
-
Park, J.1
Karplus, K.2
Barrett, C.3
Hughey, R.4
Haussler, D.5
Hubbard, T.6
Chothia, C.7
-
19
-
-
0029665409
-
Identification of sequence pattern with profile analysis
-
Gribskov M., Veretnik S. Identification of sequence pattern with profile analysis. Methods Enzymol. 266:1996;198-212.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 198-212
-
-
Gribskov, M.1
Veretnik, S.2
-
20
-
-
0031743421
-
Profile hidden Markov models
-
Eddy S.R. Profile hidden Markov models. Bioinformatics. 14:1998;755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
21
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
Sonnhammer E.L., Eddy S.R., Birney E., Bateman A., Durbin R. Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucl. Acids Res. 26:1998;320-322.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
22
-
-
0027081080
-
ProSearch: Fast searching of protein sequences with regular expression patterns related to protein structure and function
-
Kolakowski L.F., Leunissen J.A., Smith J.E. ProSearch: fast searching of protein sequences with regular expression patterns related to protein structure and function. Biotechniques. 13:1992;919-921.
-
(1992)
Biotechniques
, vol.13
, pp. 919-921
-
-
Kolakowski, L.F.1
Leunissen, J.A.2
Smith, J.E.3
-
23
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf Y.I., Rogozin I.B., Grishin N.V., Tatusov R.L., Koonin E.V. Genome trees constructed using five different approaches suggest new major bacterial clades. BMC. Evol. Biol. 1:2001;8.
-
(2001)
BMC. Evol. Biol.
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
24
-
-
0031106028
-
Eubacterial proteasomes
-
Lupas A., Zuhl F., Tamura T., Wolf S., Nagy I., De Mot R., Baumeister W. Eubacterial proteasomes. Mol. Biol. Rep. 24:1997;125-131.
-
(1997)
Mol. Biol. Rep.
, vol.24
, pp. 125-131
-
-
Lupas, A.1
Zuhl, F.2
Tamura, T.3
Wolf, S.4
Nagy, I.5
De Mot, R.6
Baumeister, W.7
-
26
-
-
0000549919
-
Mitochondrial origins
-
Yang D., Oyaizu Y., Oyaizu H., Olsen G.J., Woese C.R. Mitochondrial origins. Proc. Natl Acad. Sci. USA. 82:1985;4443-4447.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 4443-4447
-
-
Yang, D.1
Oyaizu, Y.2
Oyaizu, H.3
Olsen, G.J.4
Woese, C.R.5
-
27
-
-
0028888465
-
Protein-based phylogenies support a chimeric origin for the eukaryotic genome
-
Golding G.B., Gupta R.S. Protein-based phylogenies support a chimeric origin for the eukaryotic genome. Mol. Biol. Evol. 12:1995;1-6.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 1-6
-
-
Golding, G.B.1
Gupta, R.S.2
-
28
-
-
0030035039
-
Archaeal-eubacterial mergers in the origin of eukarya: Phylogenetic classification of life
-
Margulis L. Archaeal-eubacterial mergers in the origin of eukarya: phylogenetic classification of life. Proc. Natl Acad. Sci. USA. 93:1996;1071-1076.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 1071-1076
-
-
Margulis, L.1
-
29
-
-
0035927649
-
Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
-
Stanhope M.J., Lupas A., Italia M.J., Koretke K.K., Volker C., Brown J.R. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature. 411:2001;940-944.
-
(2001)
Nature
, vol.411
, pp. 940-944
-
-
Stanhope, M.J.1
Lupas, A.2
Italia, M.J.3
Koretke, K.K.4
Volker, C.5
Brown, J.R.6
-
30
-
-
8244241099
-
Evolution of the proteasome components
-
Hughes A.L. Evolution of the proteasome components. Immunogenetics. 46:1997;82-92.
-
(1997)
Immunogenetics
, vol.46
, pp. 82-92
-
-
Hughes, A.L.1
-
31
-
-
0034541705
-
Phylogenomic analysis of the alpha proteasome gene family from early-diverging eukaryotes
-
Bouzat J.L., McNeil L.K., Robertson H.M., Solter L.F., Nixon J.E., Beever J.E., et al. Phylogenomic analysis of the alpha proteasome gene family from early-diverging eukaryotes. J. Mol. Evol. 51:2000;532-543.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 532-543
-
-
Bouzat, J.L.1
McNeil, L.K.2
Robertson, H.M.3
Solter, L.F.4
Nixon, J.E.5
Beever, J.E.6
-
32
-
-
0032145384
-
Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core
-
Peyretaillade E., Biderre C., Peyret P., Duffieux F., Metenier G., Gouy M., et al. Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core. Nucl. Acids Res. 26:1998;3513-3520.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 3513-3520
-
-
Peyretaillade, E.1
Biderre, C.2
Peyret, P.3
Duffieux, F.4
Metenier, G.5
Gouy, M.6
-
33
-
-
0029866448
-
Accelerated evolution and Muller's rachet in endosymbiotic bacteria
-
Moran N.A. Accelerated evolution and Muller's rachet in endosymbiotic bacteria. Proc. Natl Acad. Sci. USA. 93:1996;2873-2878.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 2873-2878
-
-
Moran, N.A.1
-
35
-
-
0032874259
-
The rooting of the universal tree of life is not reliable
-
Philippe H., Forterre P. The rooting of the universal tree of life is not reliable. J. Mol. Evol. 49:1999;509-523.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 509-523
-
-
Philippe, H.1
Forterre, P.2
-
36
-
-
0030774890
-
The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing
-
Heinemeyer W., Fischer M., Krimmer T., Stachon U., Wolf D.H. The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing. J. Biol. Chem. 272:1997;25200-25209.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 25200-25209
-
-
Heinemeyer, W.1
Fischer, M.2
Krimmer, T.3
Stachon, U.4
Wolf, D.H.5
-
37
-
-
0035865472
-
The ATP-dependent CodWX (HslVU) protease in Bacillus subtilis is an N-terminal serine protease
-
Kang M.S., Lim B.K., Seong I.S., Seol J.H., Tanahashi N., Tanaka K., Chung C.H. The ATP-dependent CodWX (HslVU) protease in Bacillus subtilis is an N-terminal serine protease. EMBO J. 20:2001;734-742.
-
(2001)
EMBO J.
, vol.20
, pp. 734-742
-
-
Kang, M.S.1
Lim, B.K.2
Seong, I.S.3
Seol, J.H.4
Tanahashi, N.5
Tanaka, K.6
Chung, C.H.7
-
38
-
-
0036191586
-
Structure determination of the constitutive 20 S proteasome from bovine liver at 2.75 Å resolution
-
Unno M., Mizushima T., Morimoto Y., Tomisugi Y., Tanaka K., Yasuoka N., Tsukihara T. Structure determination of the constitutive 20 S proteasome from bovine liver at 2.75 Å resolution. J. Biochem. (Tokyo). 131:2002;171-173.
-
(2002)
J. Biochem. (Tokyo)
, vol.131
, pp. 171-173
-
-
Unno, M.1
Mizushima, T.2
Morimoto, Y.3
Tomisugi, Y.4
Tanaka, K.5
Yasuoka, N.6
Tsukihara, T.7
-
39
-
-
0033990063
-
GCG: The Wisconsin package of sequence analysis programs
-
Womble D.D. GCG: the Wisconsin package of sequence analysis programs. Methods Mol. Biol. 132:2000;2-3.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 2-3
-
-
Womble, D.D.1
-
40
-
-
0033028454
-
PSIC: Profile extraction from sequence alignments with position-specific counts of independent observations
-
Sunyaev S.R., Eisenhaber F., Rodchenkov I.V., Eisenhaber B., Tumanyan V.G., Kuznetsov E.N. PSIC: profile extraction from sequence alignments with position-specific counts of independent observations. Protein Eng. 12:1999;387-394.
-
(1999)
Protein Eng.
, vol.12
, pp. 387-394
-
-
Sunyaev, S.R.1
Eisenhaber, F.2
Rodchenkov, I.V.3
Eisenhaber, B.4
Tumanyan, V.G.5
Kuznetsov, E.N.6
-
42
-
-
0033625531
-
TEXshade: Shading and labeling of multiple sequence alignments using LATEX2ε
-
Beitz E. TEXshade: shading and labeling of multiple sequence alignments using LATEX2ε Bioinformatics. 16:2000;135-139.
-
(2000)
Bioinformatics
, vol.16
, pp. 135-139
-
-
Beitz, E.1
-
43
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:1983;2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
44
-
-
0031458333
-
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
-
Klenk H.P., Clayton R.A., Tomb J.P., White O., Nelson K.E., Ketchum K.A., et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 390:1997;364-370.
-
(1997)
Nature
, vol.390
, pp. 364-370
-
-
Klenk, H.P.1
Clayton, R.A.2
Tomb, J.P.3
White, O.4
Nelson, K.E.5
Ketchum, K.A.6
-
45
-
-
0029042511
-
Crystal structure of the 20 S proteasome from the archaeon T. acidophilum at 3.4 Å resolution
-
Lowe J., Slock D., Jap B., Zwickl P., Baumeister W., Huber R. Crystal structure of the 20 S proteasome from the archaeon T. acidophilum at 3.4 Å resolution. Science. 268:1995;533-539.
-
(1995)
Science
, vol.268
, pp. 533-539
-
-
Lowe, J.1
Slock, D.2
Jap, B.3
Zwickl, P.4
Baumeister, W.5
Huber, R.6
-
46
-
-
0028109918
-
PRE5 and PRE6, the last missing genes encoding 20 S proteasome subunits from yeast? Indication for a set of 14 different subunits in the eukaryotic proteasome core
-
Heinemeyer W., Trondle N., Albrecht G., Wolf D.H. PRE5 and PRE6, the last missing genes encoding 20 S proteasome subunits from yeast? Indication for a set of 14 different subunits in the eukaryotic proteasome core. Biochemistry. 33:1994;12229-12237.
-
(1994)
Biochemistry
, vol.33
, pp. 12229-12237
-
-
Heinemeyer, W.1
Trondle, N.2
Albrecht, G.3
Wolf, D.H.4
|