메뉴 건너뛰기




Volumn 35, Issue 11, 2007, Pages 3646-3653

G-quadruplex formation in human telomeric (TTAGGG)4 sequence with complementary strand in close vicinity under molecularly crowded condition

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; DNA; DOUBLE STRANDED DNA; GUANINE; OLIGONUCLEOTIDE; POTASSIUM ION; SINGLE STRANDED DNA; SODIUM ION; TYROSINE; CYSTINE; MACROGOL DERIVATIVE; QUADRUPLEX DNA; UNCLASSIFIED DRUG;

EID: 34547117416     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm203     Document Type: Article
Times cited : (72)

References (51)
  • 1
    • 0035929353 scopus 로고    scopus 로고
    • Switching and signaling at the telomere
    • Blackburn,E.H. (2001) Switching and signaling at the telomere. Cell 106, 661-673.
    • (2001) Cell , vol.106 , pp. 661-673
    • Blackburn, E.H.1
  • 3
    • 0035018021 scopus 로고    scopus 로고
    • G-quadruplex DNA structures - variations on a theme
    • Simonsson,T. (2001) G-quadruplex DNA structures - variations on a theme. Biol. Chem., 382, 621-628.
    • (2001) Biol. Chem , vol.382 , pp. 621-628
    • Simonsson, T.1
  • 4
    • 0025877846 scopus 로고
    • Inhibition of telomerase by G-quartet DNA structures
    • Zahler,A.M., Williamson,J.R., Cech,T.R. and Prescott,D.M. (1991) Inhibition of telomerase by G-quartet DNA structures. Nature, 350, 718-720.
    • (1991) Nature , vol.350 , pp. 718-720
    • Zahler, A.M.1    Williamson, J.R.2    Cech, T.R.3    Prescott, D.M.4
  • 6
    • 0036849582 scopus 로고    scopus 로고
    • Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix
    • Phan,A.T. and Mergny,J.L. (2002) Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix. Nucleic Acids Res., 30 4618-4625.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4618-4625
    • Phan, A.T.1    Mergny, J.L.2
  • 7
    • 0037189914 scopus 로고    scopus 로고
    • Characterization and thermodynamic properties of quadruplex/duplex competition
    • Li,W., Wu,P., Ohmichi,J. and Sugimoto,N. (2002) Characterization and thermodynamic properties of quadruplex/duplex competition. FEBS Lett. 526, 77-81.
    • (2002) FEBS Lett , vol.526 , pp. 77-81
    • Li, W.1    Wu, P.2    Ohmichi, J.3    Sugimoto, N.4
  • 8
    • 0141885309 scopus 로고    scopus 로고
    • Structural competition involving g-quadruplex DNA and its complement
    • Li,W., Miyoshi,D., Nakano,S. and Sugimoto,N. (2003) Structural competition involving g-quadruplex DNA and its complement. Biochemistry, 42, 11736-11744.
    • (2003) Biochemistry , vol.42 , pp. 11736-11744
    • Li, W.1    Miyoshi, D.2    Nakano, S.3    Sugimoto, N.4
  • 9
    • 33745365364 scopus 로고    scopus 로고
    • Molecular crowding induces telomere G-quadruplex formation under salt-deficient conditions and enhances its competition with duplex formation
    • Kan,Z.Y., Yao,Y., Wang,P., Li,X.H., Hao,Y.H. and Tan,Z. (2006) Molecular crowding induces telomere G-quadruplex formation under salt-deficient conditions and enhances its competition with duplex formation. Angew. Chem. Int. Ed. Engl., 45, 1629-1632.
    • (2006) Angew. Chem. Int. Ed. Engl , vol.45 , pp. 1629-1632
    • Kan, Z.Y.1    Yao, Y.2    Wang, P.3    Li, X.H.4    Hao, Y.H.5    Tan, Z.6
  • 10
    • 29244487065 scopus 로고    scopus 로고
    • The effect of osmolytes and small molecule on Quadruplex-WC duplex equilibrium: A fluorescence resonance energy transfer study
    • Kumar,N. and Maiti,S. (2005) The effect of osmolytes and small molecule on Quadruplex-WC duplex equilibrium: A fluorescence resonance energy transfer study. Nucleic Acids Res., 33, 6723-6732.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6723-6732
    • Kumar, N.1    Maiti, S.2
  • 11
    • 6044257949 scopus 로고    scopus 로고
    • Determining the folding and unfolding rate constants of nucleic acids by biosensor. Application to telomere G-quadruplex
    • Zhao,Y., Kan,Z.Y., Zeng,Z.X, Hao,Y.H., Chen,H. and Tan,Z. (2004) Determining the folding and unfolding rate constants of nucleic acids by biosensor. Application to telomere G-quadruplex. J. Am. Chem. Soc. 126, 13255-13264.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 13255-13264
    • Zhao, Y.1    Kan, Z.Y.2    Zeng, Z.X.3    Hao, Y.H.4    Chen, H.5    Tan, Z.6
  • 12
    • 33745374520 scopus 로고    scopus 로고
    • Hydration regulates thermodynamics of G-Quadruplex formation under molecular crowding conditions
    • Miyoshi,D., Karimata,H. and Sugimoto,N. (2006) Hydration regulates thermodynamics of G-Quadruplex formation under molecular crowding conditions. J. Am. Chem. Soc., 128, 7957-7963.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 7957-7963
    • Miyoshi, D.1    Karimata, H.2    Sugimoto, N.3
  • 13
    • 0032409981 scopus 로고    scopus 로고
    • Identification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii
    • Kelly,T.J., Simancek,P. and Brush,G.S. (1998) Identification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii. Proc. Natl Acad. Sci. USA, 95, 14634-14639.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 14634-14639
    • Kelly, T.J.1    Simancek, P.2    Brush, G.S.3
  • 14
    • 29144521665 scopus 로고    scopus 로고
    • Core/shell quantum-dot-photosensitized nano-TiO2 films: Fabrication and application to the damage of cells and DNA
    • Lu,Z.-X., Zhang,Z.-L., Zhang,M.-X., Xie,H.-Y., Tian,Z.-Q., Chen,P., Huang,H. and Pang,D.-W. (2005) Core/shell quantum-dot-photosensitized nano-TiO2 films: Fabrication and application to the damage of cells and DNA. J. Phys. Chem. B, 109, 22663-22666.
    • (2005) J. Phys. Chem. B , vol.109 , pp. 22663-22666
    • Lu, Z.-X.1    Zhang, Z.-L.2    Zhang, M.-X.3    Xie, H.-Y.4    Tian, Z.-Q.5    Chen, P.6    Huang, H.7    Pang, D.-W.8
  • 19
    • 0037126694 scopus 로고    scopus 로고
    • Molecular crowding regulates the structural switch of the DNA G-quadruplex
    • Miyoshi,D., Nakao,A. and Sugimoto,N. (2002) Molecular crowding regulates the structural switch of the DNA G-quadruplex. Biochemistry, 41 15017-15024.
    • (2002) Biochemistry , vol.41 , pp. 15017-15024
    • Miyoshi, D.1    Nakao, A.2    Sugimoto, N.3
  • 21
    • 0025896273 scopus 로고
    • Monovalent cation induced structural transitions in telomeric DNAs: G-DNA folding intermediates
    • Hardin,C.C., Henderson,E., Watson,J. and Prosser,J.K. (1991) Monovalent cation induced structural transitions in telomeric DNAs: G-DNA folding intermediates. Biochemistry, 30, 4460-4472.
    • (1991) Biochemistry , vol.30 , pp. 4460-4472
    • Hardin, C.C.1    Henderson, E.2    Watson, J.3    Prosser, J.K.4
  • 22
    • 0026657684 scopus 로고
    • Thermodynamics and structure of a DNA tetraplex: A spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T)
    • Jin,R., Gaffney,B.L., Wang,C., Jones,R.A. and Breslauer,K.J. (1992) Thermodynamics and structure of a DNA tetraplex: A spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T). Proc. Natl Acad. Sci. USA, 89, 8832-8836.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 8832-8836
    • Jin, R.1    Gaffney, B.L.2    Wang, C.3    Jones, R.A.4    Breslauer, K.J.5
  • 23
    • 0345868518 scopus 로고    scopus 로고
    • Duplex dissociation of telomere DNAs induced by molecular crowding
    • Miyoshi,D., Matsumura,S., Nakano,S. and Sugimoto,N. (2004) Duplex dissociation of telomere DNAs induced by molecular crowding. J. Am. Chem. Soc., 126, 165-169.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 165-169
    • Miyoshi, D.1    Matsumura, S.2    Nakano, S.3    Sugimoto, N.4
  • 24
    • 20444500983 scopus 로고    scopus 로고
    • Drastic effect of a single base difference between human and tetrahymena telomere sequences on their structures under molecular crowding conditions
    • Miyoshi,D., Karimata,H. and Sugimoto,N. (2005) Drastic effect of a single base difference between human and tetrahymena telomere sequences on their structures under molecular crowding conditions. Angew. Chem. Int. Ed. Engl., 44, 3740-3744.
    • (2005) Angew. Chem. Int. Ed. Engl , vol.44 , pp. 3740-3744
    • Miyoshi, D.1    Karimata, H.2    Sugimoto, N.3
  • 26
    • 33744472232 scopus 로고    scopus 로고
    • G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription
    • Cogoi,S. and Xodo,L.E. (2006) G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription. Nucleic Acids Res., 34, 2536-2549.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2536-2549
    • Cogoi, S.1    Xodo, L.E.2
  • 27
    • 0028146763 scopus 로고
    • Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: A circular dichroism study
    • Giraldo,R., Suzuki,M., Chapman,L. and Rhodes,D. (1994) Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: A circular dichroism study. Proc. Natl Acad. Sci. USA, 91, 7658-7662.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 7658-7662
    • Giraldo, R.1    Suzuki, M.2    Chapman, L.3    Rhodes, D.4
  • 29
    • 0037133510 scopus 로고    scopus 로고
    • Antiproliferative activity of G-quartet-forming oligonucleotides with backbone and sugar modifications
    • Dapic,V., Bates,P.J., Trent,J.O., Rodger,A., Thomas,S.D. and Miller,D.M. (2002) Antiproliferative activity of G-quartet-forming oligonucleotides with backbone and sugar modifications. Biochemistry, 41, 3676-3685.
    • (2002) Biochemistry , vol.41 , pp. 3676-3685
    • Dapic, V.1    Bates, P.J.2    Trent, J.O.3    Rodger, A.4    Thomas, S.D.5    Miller, D.M.6
  • 31
    • 0030764882 scopus 로고    scopus 로고
    • Ion selective folding of loop domains in a potent anti-HIV oligonucleotide
    • Jing,N., Rando,R.F., Pommier,Y. and Hogan,M.E. (1997) Ion selective folding of loop domains in a potent anti-HIV oligonucleotide. Biochemistry, 36, 12498-12505.
    • (1997) Biochemistry , vol.36 , pp. 12498-12505
    • Jing, N.1    Rando, R.F.2    Pommier, Y.3    Hogan, M.E.4
  • 32
    • 0025923402 scopus 로고
    • Fluorescent-labeled oligonucleotide probes: Detection of hybrid formation in solution by fluorescence polarization spectroscopy
    • Murakami,A., Nakaura,M., Nakatsuji,Y., Nagahara,S., Tran-Cong,Q. and Makino,K. (1991) Fluorescent-labeled oligonucleotide probes: Detection of hybrid formation in solution by fluorescence polarization spectroscopy. Nucleic Acids Res., 19, 4097-4102.
    • (1991) Nucleic Acids Res , vol.19 , pp. 4097-4102
    • Murakami, A.1    Nakaura, M.2    Nakatsuji, Y.3    Nagahara, S.4    Tran-Cong, Q.5    Makino, K.6
  • 33
    • 0032508468 scopus 로고    scopus 로고
    • Following G-quartet formation by UV-spectroscopy
    • Mergny,J.L., Phan,A.T. and Lacroix,L. (1998) Following G-quartet formation by UV-spectroscopy. FEBS Lett., 435, 74-78.
    • (1998) FEBS Lett , vol.435 , pp. 74-78
    • Mergny, J.L.1    Phan, A.T.2    Lacroix, L.3
  • 34
    • 0028964016 scopus 로고
    • A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy
    • Marsh,T.C., Vesenka,J. and Henderson,E. (1995) A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy. Nucleic Acids Res. 23, 696-700.
    • (1995) Nucleic Acids Res , vol.23 , pp. 696-700
    • Marsh, T.C.1    Vesenka, J.2    Henderson, E.3
  • 35
    • 0037440745 scopus 로고    scopus 로고
    • Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+
    • Miyoshi,D., Nakao,A. and Sugimoto,N. (2003) Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+. Nucleic Acids Res., 31, 1156-1163.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1156-1163
    • Miyoshi, D.1    Nakao, A.2    Sugimoto, N.3
  • 36
    • 0037388402 scopus 로고    scopus 로고
    • K(+) and Na(+)-induced self-assembly of telomeric oligonucleotide d(TTAGGG)(n)
    • Zhang,X.Y., Cao,E.H., Zhang,Y., Chou,C. and Bai,C. (2003) K(+) and Na(+)-induced self-assembly of telomeric oligonucleotide d(TTAGGG)(n). J. Biomol. Struct. Dyn., 20, 693-702.
    • (2003) J. Biomol. Struct. Dyn , vol.20 , pp. 693-702
    • Zhang, X.Y.1    Cao, E.H.2    Zhang, Y.3    Chou, C.4    Bai, C.5
  • 37
    • 0028147259 scopus 로고
    • Probing specific molecular conformations with the scanning force microscope. Complexes of plasmid DNA and anti-Z-DNA antibodies
    • Pietrasanta,L.I., Schaper,A. and Jovin,T.M. (1994) Probing specific molecular conformations with the scanning force microscope. Complexes of plasmid DNA and anti-Z-DNA antibodies. Nucleic Acids Res., 22 3288-3292.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3288-3292
    • Pietrasanta, L.I.1    Schaper, A.2    Jovin, T.M.3
  • 38
    • 0026344818 scopus 로고
    • Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli
    • Zimmerman,S.B. and Trach,S.O. (1991) Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli. J. Mol. Biol., 222, 599-620.
    • (1991) J. Mol. Biol , vol.222 , pp. 599-620
    • Zimmerman, S.B.1    Trach, S.O.2
  • 39
    • 0034122135 scopus 로고    scopus 로고
    • G-Quadruplex DNA as a target for drug design
    • Kerwin,S.M. (2000) G-Quadruplex DNA as a target for drug design. Curr. Pharm. Des., 6, 441-478.
    • (2000) Curr. Pharm. Des , vol.6 , pp. 441-478
    • Kerwin, S.M.1
  • 40
    • 0035902465 scopus 로고    scopus 로고
    • In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia. lemnae macronuclei
    • Schaffitzel,C., Berger,I., Postberg,J., Hanes,J., Lipps,H.J. and Pluckthun,A. (2001) In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia. lemnae macronuclei. Proc. Natl Acad. Sci. USA, 98, 8572-8577.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8572-8577
    • Schaffitzel, C.1    Berger, I.2    Postberg, J.3    Hanes, J.4    Lipps, H.J.5    Pluckthun, A.6
  • 41
    • 3543039438 scopus 로고    scopus 로고
    • Detection of quadruplex DNA structures in human telomeres by a fluorescent carbazole derivative
    • Chang,C.C., Kuo,I.C., Ling,I.F., Chen,C.T., Chen,H.C., Lou,P.J., Lin,J.J. and Chang,T.C. (2004) Detection of quadruplex DNA structures in human telomeres by a fluorescent carbazole derivative. Anal. Chem. 76, 4490-4494.
    • (2004) Anal. Chem , vol.76 , pp. 4490-4494
    • Chang, C.C.1    Kuo, I.C.2    Ling, I.F.3    Chen, C.T.4    Chen, H.C.5    Lou, P.J.6    Lin, J.J.7    Chang, T.C.8
  • 42
    • 3042785608 scopus 로고    scopus 로고
    • Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA
    • Duquette,M.L., Handa,P., Vincent,J.A., Taylor,A.F. and Maizels,N. (2004) Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA. Genes. Dev., 18, 1618-1629.
    • (2004) Genes. Dev , vol.18 , pp. 1618-1629
    • Duquette, M.L.1    Handa, P.2    Vincent, J.A.3    Taylor, A.F.4    Maizels, N.5
  • 44
    • 27144451010 scopus 로고    scopus 로고
    • Telomere-end-binding proteins control the formation of G-quadruplex DNA structures in viro
    • Paeschke,K., Simonsson,T., Postberg,J., Rhodes,D. and Lipps,H.J. (2005) Telomere-end-binding proteins control the formation of G-quadruplex DNA structures in viro. Nat. Struct. Mol. Biol., 12, 847-854.
    • (2005) Nat. Struct. Mol. Biol , vol.12 , pp. 847-854
    • Paeschke, K.1    Simonsson, T.2    Postberg, J.3    Rhodes, D.4    Lipps, H.J.5
  • 45
    • 33646151431 scopus 로고    scopus 로고
    • Verification of antiparallel G-quadruplex structure in human telomeres by using two-photon excitation fluorescence lifetime imaging microscopy of the 3,6-bis(1-methyl-4-vinylpyridinium)carbazole diiodide molecule
    • Chang,C.C., Chu,J.F., Kao,F.J., Chiu,Y.C., Lou,P.J., Chen,H.C. and Chang,T.C. (2006) Verification of antiparallel G-quadruplex structure in human telomeres by using two-photon excitation fluorescence lifetime imaging microscopy of the 3,6-bis(1-methyl-4-vinylpyridinium)carbazole diiodide molecule. Anal. Chem., 78, 2810-2815.
    • (2006) Anal. Chem , vol.78 , pp. 2810-2815
    • Chang, C.C.1    Chu, J.F.2    Kao, F.J.3    Chiu, Y.C.4    Lou, P.J.5    Chen, H.C.6    Chang, T.C.7
  • 46
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • Siddiqui-Jain,A., Grand,C.L., Bearss,D.J. and Hurley,L.H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc. Natl Acad. Sci, USA, 99, 11593-11598.
    • (2002) Proc. Natl Acad. Sci, USA , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 47
    • 12844270590 scopus 로고    scopus 로고
    • Yanez,G.H., Khan,S.J., Locovei,A.M., Pedroso,I.M. and Fletcher,T.M. (2005) DNA structure-dependent recruitment of telomeric proteins to single-stranded/double-stranded DNA junctions. Biochem. Biophys. Res. Commun., 328, 49-56.
    • Yanez,G.H., Khan,S.J., Locovei,A.M., Pedroso,I.M. and Fletcher,T.M. (2005) DNA structure-dependent recruitment of telomeric proteins to single-stranded/double-stranded DNA junctions. Biochem. Biophys. Res. Commun., 328, 49-56.
  • 48
    • 24944460598 scopus 로고    scopus 로고
    • Shelterin: The protein complex that shapes and safeguards human telomeres
    • de Lange,T. (2005) Shelterin: The protein complex that shapes and safeguards human telomeres. Genes. Dev., 19, 2100-2110.
    • (2005) Genes. Dev , vol.19 , pp. 2100-2110
    • de Lange, T.1
  • 49
    • 0023256126 scopus 로고
    • A single mode of DNA base-pair opening drives imino proton exchange
    • Gueron,M., Kochoyan,M. and Leroy,J.L. (1987) A single mode of DNA base-pair opening drives imino proton exchange. Nature, 328, 89-92.
    • (1987) Nature , vol.328 , pp. 89-92
    • Gueron, M.1    Kochoyan, M.2    Leroy, J.L.3
  • 50
    • 0242349890 scopus 로고    scopus 로고
    • Protecting the terminus: T-loops and telomere end-binding proteins
    • Wei,C. and Price,M. (2003) Protecting the terminus: T-loops and telomere end-binding proteins. Cell. Mol. Life Sci., 60, 2283-2294.
    • (2003) Cell. Mol. Life Sci , vol.60 , pp. 2283-2294
    • Wei, C.1    Price, M.2
  • 51
    • 1842683257 scopus 로고    scopus 로고
    • T-loops and the origin of telomeres
    • de Lange,T. (2004) T-loops and the origin of telomeres. Nat. Rev. Mol. Cell Biol., 5, 323-329.
    • (2004) Nat. Rev. Mol. Cell Biol , vol.5 , pp. 323-329
    • de Lange, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.