Applying real-time quantitative PCR to Fusarium crown rot of wheat

Plant Disease

Volumn 91, Issue 8, 2007, Pages 1021-1028

  Hogg, A C ^a   Johnston, R H ^a   Dyer, A T ^a  

^a MONTANA STATE UNIVERSITY   (United States)

Author keywords

TaqMan

Indexed keywords

DISEASES; DNA; PLANTS (BOTANY);

FUSARIUM CROWN ROT (FCR); FUSARIUM CULMORUM; QUANTITATIVE PCR;

CROPS;

FUSARIUM; FUSARIUM CULMORUM; FUSARIUM PSEUDOGRAMINEARUM; TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 34547115675     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-91-8-1021     Document Type: Article

References (38)

1. Aoki, T., and O'Donnell, K. 1999. Morphological and molecular characterization of Fusarium pseudograminearum sp. nov., formerly recognized as the group I population of F. graminearum. Mycologia 91:597-609.
2. Backhouse, D., Abubakar, A. A., Burgess, L. W., Dennis, J. I., Holloway, G. J., Wildermuth, G. B., Wallwork, J., and Henry, F. J. 2004. Survey of Fusarium species associated with crown rot of wheat and barley in eastern Australia. Australas. Plant Pathol. 33:255-261.
3. Bailey, K. L. 1996. Diseases under conservation tillage systems. Can. J. Plant Sci. 76:635-639.
4. Bailey, K. L., Mortensen, K., Lafond, G. P., Watson, P. R., and Derksen, D. A. 2001. Effect of tillage and crop rotation on root and foliar diseases of wheat and pea in Saskatchewan from 1991-1998: univariate and multivariate analyses. Can. J. Plant Sci. 81:789-803.
5. Bateman, G. L., Edwards, S. G., Marshall, J., Morgan, L. W., Nicholson, P., Nuttall, M., Parry, D. W., Scrancher, M., and Turner, A. S. 2000. Effects of cultivar and fungicides on stem-base pathogens, determined by quantitative PCR, and on diseases and yield of wheat. Ann. Appl. Biol. 137:213-221.
6. Beddis, A. L., and Burgess L. W. 1992. The influence of plant water stress on infection and colonization of wheat seedlings by Fusarium graminearum group 1. Phytopathology 82:78-83.
7. Bluhm, B. H., Cousins, M. A., and Woloshuk, C. P. 2004. Multiplex real-time PCR detection of fumonisin-producing and trichothecene-producing groups of Fusarium species. J. Food Prot. 76:536-543.
8. Burgess, L. W., Backhouse, D., Summerell, B. A., and Swan, L. J. 2001. Crown rot of wheat. Pages 271-294 in: Fusarium: Paul E. Nelson Memorial Symposium. B. A. Summerell, J. F. Leslie, D. Backhouse, W. L. Bryden, and L. W. Burgess, eds. American Phytopathological Society, St. Paul, MN.
9. Cook, R. J. 1968. Fusarium root and foot rot of cereals in the Pacific Northwest. Phytopathology 58:127-131.
10. Cook, R. J. 1980. Fusarium foot rot of wheat and its control in the Pacific Northwest. Plant Dis. 64:1061-1066.
11. Cook, R. J. 1981. Fusarium diseases of wheat and other small grains in North America. Pages 39-52 in: Fusarium: Diseases, Biology and Taxonomy. P. E. Nelson, T. A. Toussoun, and R. J. Cook, eds. The Pennsylvania State University Press, University Park.
12. Cook, R. J., and Papendick, R. I. 1970. Soil water potential as a factor in the ecology of Fusarium roseum f. sp. cerealis 'culmorum'. Plant Soil 32:131-145.
13. Gao, X., Jackson, T. A., Lambert, K. N., Li, S., Hartman, G. L., and Niblack, T. L. 2004. Detection and quantification of Fusarium solani f. sp. glycines in soybean roots with real-time quantitative polymerase chain reaction. Plant Dis. 88:1372-1380.
14. Heid, C. A., Stevens, J., Livak, K. J., and Williams, P. M. 1996. Real-time quantitative PCR. Genome Methods 6:986-994.
15. Hill, J. P., Fernandez, J. A., and McShane, M. S. 1983. Fungi associated with common root rot of winter wheat in Colorado and Wyoming. Plant Dis. 67:795-797.
16. Kane, R. T., Smiley, R. W., and Sorrells, M. E. 1987. Relative pathogenicity of selected Fusarium species and Microdochium bolleyi to winter wheat in New York. Plant Dis. 71:177-181.
17. Klein, T. A., Burgess, L. W., and Ellison, F. W. 1991. The incidence and spatial patterns of wheat plants infected by Fusarium graminearum group 1 and the effect of crown rot on yield. Aust. J. Agric. Res. 42:399-407.
18. Lanning, S. P., Carlson, G. R., Nash, D., Wichman, D. M., Kephart, K., Stougaard, R. N., Kushnak, G. D., Eckhoff, J. L., Grey, W. E., and Talbert, L.E. Registration of 'Choteau' wheat. 2004. Crop Sci. 44:2263-2264.
19. Lanning, S. P., Habernicht, D., Wichman, D. M., Kephart, K. D., Stougaard, R. N., Kushnak, G. D., Eckhoff, J. L., Carlson, G. R., Grey, W. E., and Talbert, L. E. Registration of 'Outlook' wheat. 2003. Crop Sci. 43:2302-2303.
20. Mathre, D. E., and Johnston, R. H. 1975. Cephalosporium stripe of winter wheat: procedures for determining host response. Crop Sci. 15:591-594.
21. Nelson, P. E., Toussoun, T. A., and Marasas, W. F. O. 1983. Fusarium Species: An Illustrative Manual for Identification. The Pennsylvania State University Press, University Park.
22. Nicholson, P., Simpson, D. R., Weston, G., Rezanoor, H. N., Lees, A. K., Parry, D. W., and Joyce, D. 1998. Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays. Physiol. Mol. Plant Pathol. 53:17-37.
23. Papendick R. I., and Cook R. J. 1974. Plant water stress and the development of Fusarium foot rot in wheat subjected to different cultural practices. Phytopathology 64:358-363.
24. Paulitz, T. C., Smiley, R. W., and Cook, R. J. 2002. Insights into the prevalence and management of soil borne cereal pathogens under direct seeding in the Pacific Northwest, U.S.A. Can. J. Plant Pathol. 24:416-428.
25. Pettitt, T., Xiangming, X., and Parry, D. 2003. Association of Fusarium species in the wheat stem rot complex. Eur. J. Plant Pathol. 109:769-774.
26. Reischer, G. H., Lemmens, M., Farnleitner, A., Adler, A., and Mach, R. L. 2004. Quantification of Fusarium graminearum in infected wheat by species specific real-time PCR applying a TaqMan probe. J. Microbiol. Methods 59:141-146.
27. Schnerr H., Niessen, L., and Vogel, R. F. 2001. Real-time detection of the tri5 gene in Fusarium species by LightCycler-PCR using SYBR Green I for continuous fluorescence monitoring. Int. J. Food Microbiol. 71:53-61.
28. Smiley, R. W., Collins, H. P., and Rasmussen, P. E. 1996. Diseases of wheat in long-term agronomic experiments at Pendleton, Oregon. Plant Dis. 80:813-820.
29. Smiley, R. W., Gourlie, J. A., Easley, S. A., Patterson, L. M., and Whittaker, R. G. 2005. Crop damage estimates for crown rot of wheat and barley in the Pacific Northwest. Plant Dis. 89:595-604.
30. Smiley, R. W., and Patterson, L. M. 1996. Pathogenic fungi associated with Fusarium foot rot of winter wheat in the semiarid Pacific Northwest. Plant Dis. 80:944-949.
31. Strausbaugh, C. A., Bradley, C. A., Koehn, A. C., and Forster, R. L. 2004. Survey of root diseases of wheat and barley in Southwestern Idaho. Can. J. Plant Pathol. 26:167-176.
32. Strausbaugh, C. A., Overturf, K., and Koehn, A. C. 2005. Pathogenicity and real-time PCR detection of Fusarium spp. in wheat and barley roots. Can. J. Plant Pathol. 27:430-438.
33. Summerall, B. A., Burgess, L. W., and Klein, T. A. 1989. The impact of stubble management on incidence of crown rot of wheat. Aust. J. Exp. Agric. 29:91-98.
34. Turner, A. S., Nicholson, P., Edwards, S. G., Bateman, G. L., Morgan, L. W., Todd, A. D., Parry, D. W., Marshall J., and Nuttall, M. 2002. Relationship between brown foot rot and DNA of Microdochium nivale, determined by quantitative PCR, in stem bases of winter wheat. Plant Pathol. 51:464-471.
35. Waalwijk, C., Hiede, R., Vries, I., Lee, T., Schoen, C., Corainville, C., Hauser-Hahn, I., Kastelein, P., Köhl, J., Lonnet, P., Demarquet, T., and Kema, G. H. J. 2004. Quantitative detection of Fusarium species in wheat using TaqMan. Eur. J. Plant Pathol. 110:481-494.
36. Wallwork, H., Butt, M., Cheong, P. E., and Williams, K. J. 2004. Resistance to crown rot in wheat identified through and improved method for screening adult plants. Aust. J. Plant Pathol.
37. Wiese, M. V. 1987. Compendium of Wheat Diseases, 2nd ed. American Phytopathological Society, St. Paul, MN.
38. Windels, C. E. 2000. Economic and social impacts of Fusarium head blight: changing farms and rural communities in the Northern Great Plains. Phytopathology 90:17-21.