Quantitative detection of Fusarium species in wheat using TaqMan

European Journal of Plant Pathology

Volumn 110, Issue 5-6, 2004, Pages 481-494

  Waalwijk, Cees ^a   Van Der Heide, Ruth ^a,d   De Vries, Ineke ^a   Van Der Lee, Theo ^a   Schoen, Cor ^a   Costrel de Corainville, Guillaume ^b   Häuser Hahn, Isolde ^b   Kastelein, Pieter ^a   Köhl, Jürgen ^a   Lonnet, Philippe ^c   Demarquet, Thierry ^c   Kema, Gert H J ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b BAYER CROPSCIENCE AG   (Germany)

^c Florimond Desprez ^*  (France)

^d KEYGENE N V   (Netherlands)

Author keywords

Fusarium head blight (FHB); Gibberella; Toxin

Indexed keywords

DETECTION METHOD; DISEASE CONTROL; FUNGAL DISEASE; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; WHEAT;

FUNGI; FUSARIUM; FUSARIUM CULMORUM; FUSARIUM POAE; GIBBERELLA; GIBBERELLA AVENACEA; GIBBERELLA ZEAE; MICRODOCHIUM NIVALE; TRITICUM AESTIVUM;

EID: 3442894211     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:EJPP.0000032387.52385.13     Document Type: Article

References (34)

1. Afonina IA, Reed MW, Lusby E, Shishkina IG and Belousov YS (2002) Minor Groove Binder-conjugated DNA probes for quantitative DNA detection by hybridization-triggered fluorescence. BioTechniques 32: 940-949.
2. Bai G and Shaner G (1994) Scab of wheat: Prospects for control. Plant Disease 78: 760-766.
3. Bottalico A and Perrone G (2002) Toxigenic Fusarium species and mycotoxins associated with head blight in small-grain cereals in Europe. European Journal of Plant Pathology 108: 611-624.
4. Brennan JM, Fagan B, van Maanen A, Cooke BM and Doohan FM (2003) Studies on in vitro growth and pathogenicity of European Fusarium fungi. European Journal of Plant Pathology 109: 577-587.
5. Brown DW, Desjardins AE, Yun SH, Plattner R, Lee T, Dyer R and Turgeon BG (2001) Are Gibberella zeae sexual spores the critical inoculum to FHB epidemics? 2001 National Fusarium Head Blight Forum Proceedings, (p. 104) Cincinnati, USA.
6. Cotton TK and Munkvold GP (1998) Survival of Fusarium moniliforme, F. proliferatum, and F. subglutinans in maize stalk residue. Phytopathology 88: 550-555.
7. CWSCG (1984) Fusarium species, distribution and pathogenicity from scabby heads in China. Journal of Shanghai Normal College 3: 69-82.
8. Dill-Macky R and Jones RK (2000) The effect of previous crop residues and tillage on Fusarium head blight of wheat. Plant Disease 84: 71-76.
9. Doohan FM, Parry DW and Nicholson P (1999) Fusarium ear blight of wheat: The use of quantitative PCR and visual disease assessment in studies of disease control. Plant Pathology 48: 209-217.
10. Edwards SG, Pirgozliev SR, Hare MC and Jenkinson P (2001) Quantification of trichothecene-producing Fusarium species in harvested grain by competitive PCR to determine efficacies of fungicides against Fusarium Head Blight of winter wheat. Applied and Environmental Microbiology 67: 1575-1580.
11. Fernando WGD, Paulitz TC, Seaman WL, Dutilleul P and Miller J (1997) Head blight gradients caused by Gibberella zeae from area sources of inoculum in wheat fields plots. Phytopathology 87: 414-421.
12. Gruber F, Falkner FG, Dorner F and Hämmerle T (2001) Quantification of viral DNA by real-time PCR applying duplex amplification. Internal standardization, and two-color fluorescence detection. Applied and Environmental Microbiology 67: 2837-2839.
13. Inch S. and J Gilbert (2002). Survival of Gibberella zeae in Fusarium-damaged wheat kernels. Plant Disease 87: 282-287.
14. Kema GHJ, Goodwill SB, Hamza S, Verstappen ECP, Cavaletto JR, Van der Lee TAJ, de Weerdt M, Bonants PJM and Waalwijk C (2002) A combined amplified fragment length polymorphism and randomly amplified polymorphism DNA genetic linkage map of Mycosphaerella graminicola, the Septoria tritici leaf blotch pathogen of wheat. Genetics 161: 1497-1505.
15. Maldonado-Ramirez SL and Bergstrom GC (2000) Temporal patterns of ascospore discharge by Gibberella zeae from colonized corn stalks under natural conditions. 2001 National Fusarium Head Blight Forum Proceedings, (pp. 159-162) Cincinnati, USA.
16. Mulfinger S, Niessen L and Vogel RF (2000) PCR based quality control of toxigenic Fusarium spp. in brewing malt using ultrasonication for rapid sample preparation. Advance in Food Sciences 22: 38-46.
17. Nganje WE, Bangsund DA, Leistritz FL, Wilson WW and Tiapo N (2001) National Fusarium Head Blight Forum Proceedings, (pp. 275-281) Cincinnati, USA.
18. Nicholson P, Lees AK, Maurin N, Parry DW and Rezanoor HN (1996) Development of a PCR assay to identify and quantify Microdochium nivale var. nivale and Microdochium nivale var. majus in wheat. Physiological and Molecular Plant Pathology 48: 257-271.
19. Nicholson P, Simpson DR, Weston G, Rezanoor HN, Lees AK, Parry DW and Joyce D (1998) Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays. Physiological and Molecular Plant Pathology 53: 17-37.
20. Obst A, Günther B, Beck R, Lepschy J and Tischner H (2002) Weather conditions conducive to Gibberella zeae and Fusarium graminearum head blight of wheat. Journal of Applied Genetics 43A: 185-192.
21. Oerke E-C, Meier A, Kienemann K, Meyer G, Muthomi J, Schade-Schütze A, Steiner U and Dehne H-W (2002) Incidence and control of Fusarium species causing head blight in the Rhineland, Germany. In: Fusarium-Befall und Mykotoxinbelasting von Getreide. Tagungsband der 13. Wissenschaftlichen Fachtagung der Landwirtschaftlichen Fakultät der Universität Bonn, pp. 32-44.
22. O'Donnell K, Kistler HC, Tacke BK and Casper HH (2000) Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proceeding of the National Academy of Sciences USA 97: 7905-7910.
23. Parry DW, Jenkinson P and MacLeod L (1995) Fusarium ear blight (scab) in small grain cereals - a review. Plant Pathology 44: 207-238.
24. Parry DW, Pettitt TR. Jenkinson P and Lees AK (1994) The cereal Fusarium complex. In: Blakeman JP and Williamson B (eds) Ecology of Plant Pathogens (pp. 301-320) CABI, Wallingford.
25. Schnerr H, Niessen L and Vogel RF (2001) Real time detection of the tri5 gene in Fusarium species by lightcycler-PCR using SYBR Green I for continuous fluorescence monitoring. International Journal of Food Microbiology 71: 53-61.
26. Schnerr H, Vogel RF and Niessen L (2002) Correlation between DNA of trichothecene-producing Fusarium species and deoxynivalenol concentrations in wheat samples. Letters of Applied Microbiology 35: 121-125.
27. van Eeuwijk FA, Mesterhazy A, Kling CI, Ruckenbauer P, Saur L, Buerstmayr H, Lemmens M, Keizer LCP, Maurin N and Snijders CHA (1995). Assessing non-specificity of resistance in wheat to head blight caused by inoculation with European strains of Fusarium culmorum, F. graminearum and F. nivale using a multiplicative model for interaction. Theoretical and Applied Genetics 90: 221-228.
28. Waalwijk C, Kastelein P, de Vries PhM, Kerényi Z, van der Lee TAJ, Hesselink T, Köhl J and Kema GHJ (2003) Major changes in Fusarium spp. in wheat in the Netherlands. European Journal of Plant Pathology 109: 743-754.
29. Wang YZ (1997) Epidemiology and management of wheat scab in China. In: Dubin HJ, Gilchrist L, Reeves J and McNab A (eds) Fusarium Head Scab: Global Status and Future Prospects, (pp. 97-105) CYMMIT, Mexico.
30. Whitehead Institute (2003) The initial release of our high quality draft sequence of the Fusarium graminearum genome (http: //www.genome.wi.mit.edu/ annotation/fungi/fusarium/ whatsnew.html).
31. Windels CE (2000) Economic and social impacts of Fusarium head blight: Changing farms and rural communities in the Northern great plains. Phytopathology 90: 17-21.
32. Winton LM, Stone JK, Watrud LS and Hansen EM (2002) Simultaneous one-tube quantification of host and pathogen DNA with real-time polymerase chain reaction. Phytopathology 92: 112-116.
33. Zadoks JC, Chang TT and Konzak CF (1974) A decimal code for the growth stages of cereals. Weed Research 14: 415-421.
34. Zeller KA, Bowden RL and Leslie JF (2003) Diversity of epidemic populations of Gibberella zeae from small quadrats in Kansas and North Dakota. Phytopathology 93: 874-880.