Susceptibility of mammalian deoxyribonucleases I (DNases I) to proteolysis by proteases and its relationships to tissue distribution: Biochemical and molecular analysis of equine DNase I

Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology

Volumn 148, Issue 1, 2007, Pages 93-102

  Ueki, Misuzu ^a   Takeshita, Haruo ^b   Fujihara, Junko ^b   Ueta, Gen ^c   Nakajima, Tamiko ^c   Kominato, Yoshihiko ^c   Kishi, Koichiro ^c   Iida, Reiko ^a   Yasuda, Toshihiro ^a  

^a UNIVERSITY OF FUKUI   (Japan)

^b SHIMANE UNIVERSITY   (Japan)

^c GUNMA UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

cDNA cloning; Deoxyribonuclease I; Equus caballus (Horse); Mammal; Molecular evolution; Proteolysis; Purification

Indexed keywords

CHYMOTRYPSIN; DEOXYRIBONUCLEASE I; PEPSIN A; PROTEINASE; TRYPSIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMAL TISSUE; ARTICLE; BIOCHEMISTRY; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME STRUCTURE; HORSE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PANCREAS; PAROTID GLAND; PRIORITY JOURNAL; PROTEIN DEGRADATION; SITE DIRECTED MUTAGENESIS; TISSUE DISTRIBUTION;

EQUIDAE; EQUUS CABALLUS; MAMMALIA;

EID: 34447651346     PISSN: 10964959     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpb.2007.04.018     Document Type: Article

References (38)

1. Abe A., and Liao T.H. The immunological and structural comparisons of deoxyribonuclease I. Glycosylation differences between bovine pancreatic and parotid deoxyribonucleases. J. Biol. Chem. 258 (1983) 10283-10288
2. Chen C.Y., Lu S.C., and Liao T.H. Cloning, sequencing and expression of a cDNA encoding bovine pancreatic deoxyribonuclease I in Escherichia coli: purification and characterization of the recombinant enzyme. Gene 206 (1998) 181-184
3. De María A., and Arruti C. Bovine DNase I : gene organization, mRNA expression, and change in the topological distribution of the protein during apoptosis in lens epithelial cells. Biochem. Biophys. Res. Commun. 312 (2003) 634-641
4. Fujihara J., Hieda Y., Xue Y., Okui I., Kataoka K., and Takeshita H. Single-step purification by lectin affinity and deglycosylation analysis of recombinant human and porcine deoxyribonucleases I expressed in COS-7 cells. Biotechnol. Lett. 28 (2006) 215-221
5. Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., and Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77 (1989) 51-59
6. Horii A., Emi M., Tomita N., Nishida T., Ogawa M., Mori T., and Matsukara K. Primary structure of human pancreatic α-amylase gene: its comparison with human salivary α-amylase gene. Gene 60 (1987) 57-64
7. Jones S.J., Worrall A.F., and Connolly B.A. Site-directed mutagenesis of the catalytic residues of bovine pancreatic deoxyribonuclease I. J. Mol. Biol. 264 (1996) 1154-1163
8. Kaneko Y., Takeshita H., Mogi K., Nakajima T., Yasuda T., Itoi M., Kuwano H., and Kishi K. Molecular, biochemical and immunological analyses of canine pancreatic DNase I. J. Biochem. 134 (2003) 711-718
9. Keller P.J., Cohen E., and Neurath H. The proteins of bovine pancreatic juice. J. Biol. Chem. 233 (1958) 344-349
10. 4. Nature (London) 227 (1970) 680-685
11. Mannherz H.G. Crystallization of actin in complex with actin-binding protein. J. Biol. Chem. 267 (1992) 11661-11664
12. Moore S. Pancreatic DNase. In: Boyer P.D. (Ed). The Enzymes. 3rd edn. vol. 14 (1981), Academic Press, New York 281-296
13. Mori S., Yasuda T., Takeshita H., Nakajima T., Nakazato E., Mogi K., Kaneko Y., and Kishi K. Molecular, biochemical and immunological analyses of porcine pancreatic DNase I. Biochim. Biophys. Acta 1547 (2001) 275-287
14. Nadano D., Yasuda T., and Kishi K. Measurement of deoxyribonuclease I activity in human tissues and body fluids by a single radial enzyme-diffusion method. Clin. Chem. 39 (1993) 448-452
15. Nakajima T., Yasuda T., Nakashima Y., Hosomi O., Takeshita H., and Kishi K. Two novel screening methods for selecting monoclonal antibodies which specifically inhibit DNase I enzyme activity. Immunol. Invest. 27 (1998) 145-152
16. Nakashima Y., Yasuda T., Takeshita H., Nakajima T., Hosomi O., Mori S., and Kishi K. Molecular, biochemical and immunological studies of hen pancreatic deoxyribonuclease I. Int. J. Biochem. Cell Biol. 31 (1999) 1315-1326
17. Napirei M., Karsunky H., Zevnik B., Stephan H., Mannherz H.G., and Möröy T. Features of systemic lupus erythematosus in DNase1-deficient mice. Nat. Genet. 25 (2000) 177-181
18. Napirei M., Ricken A., Eulitz D., Knoop H., and Mannherz H.G. Expression pattern of the deoxyribonuclease 1 gene: lessons from the DNase1 knockout mouse. Biochem. J. 380 (2004) 929-937
19. Oefner C., and Suck D. Crystallographic refinement and structure of DNase I at 2 Å resolution. J. Mol. Biol. 192 (1986) 605-632
20. Pan C.Q., Ulmer J.S., Herzka A., and Lazarus R.A. Mutational analysis of human DNase I at the DNA binding interface: implications for DNA recognition, catalysis, and metal ion dependence. Protein Sci. 7 (1998) 628-636
21. Paudel H.K., and Liao T.H. Comparison of the three primary structures of deoxyribonuclease isolated from bovine, ovine, and porcine pancreas. Derivation of the amino acid sequence of ovine DNase and revision of the previously published amino acid sequence of bovine DNase. J. Biol. Chem. 261 (1986) 16012-16017
22. Peitsch M.C., Irmler M., French L.E., and Tschopp J. Genomic organization and expression of mouse deoxyribonuclease I. Biochem. Biophys. Res. Commun. 207 (1995) 62-68
23. Polzar B., and Mannherz H.G. Nucleotide sequence of a full length cDNA clone encoding the deoxyribonuclease I from the rat parotid gland. Nucleic Acids Res. 18 (1990) 7151
24. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
25. Takeshita H., Yasuda T., Nadano D., Iida R., and Kishi K. Deoxyribonuclease I from rat urine: affinity purification, characterization, and immunochemical studies. J. Biochem. 118 (1995) 932-938
26. Takeshita H., Yasuda T., Nakajima T., Hosomi O., Nakashima Y., and Kishi K. Mouse deoxyribonuclease I (DNase I): biochemical and immunological characterizations, cDNA structure and tissue distribution. Biochem. Mol. Biol. Int. 42 (1997) 65-75
27. Takeshita H., Mogi K., Yasuda T., Nakajima T., Nakashima Y., Mori S., Hoshino T., and Kishi K. Mammalian deoxyribonucleases I are classified into three types: pancreas, parotid, and pancreas-parotid (mixed), based on differences in their tissue concentrations. Biochem. Biophys. Res. Commun. 269 (2000) 481-484
28. 2+-binding site. Biochem. J. 357 (2001) 473-480
29. Takeshita H., Yasuda T., Nakajima T., Mogi K., Kaneko Y., Iida R., and Kishi K. A single amino acid substitution of Leu130Ile in snake DNases I contributes to the acquisition of thermal stability: a clue to the molecular evolutionary mechanism from cold-blooded to warm-blooded vertebrates. Eur. J. Biochem. 70 (2003) 307-314
30. Ulmer J.S., Herzka A., Toy K.J., Baker D.L., Dodge A.H., Sincropi D., Shak S., and Lazarus R.A. Engineering actin-resistant human DNase I for treatment of cystic fibrosis. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 8225-8229
31. Yasuda T., Awazu S., Sato W., Iida R., Tanaka Y., and Kishi K. Human genetically polymorphic deoxyribonuclease: purification, characterization, and multiplicity of urine deoxyribonuclease I. J. Biochem. 108 (1990) 393-398
32. Yasuda T., Nadano D., Takeshita H., and Kishi K. Two distinct secretory ribonucleases from human cerebrum: purification, characterization and relationships to other ribonucleases. Biochem. J. 296 (1993) 617-625
33. Yasuda T., Kishi K., Yanagawa Y., and Yoshida A. Structure of the human deoxyribonuclease I (DNase I) gene: identification of the nucleotide substitution that generates its classical genetic polymorphism. Ann. Hum. Genet. 59 (1995) 1-15
34. Yasuda T., Takeshita H., Nakajima T., Hosomi O., Nakashima Y., and Kishi K. Rabbit DNase I: purification from urine, immunological and proteochemical characterization, nucleotide sequence, expression in tissues, relationships with other mammalian DNases I and phylogenetic analysis. Biochem. J. 325 (1997) 465-473
35. Yasuda T., Takeshita H., Iida R., Nakajima T., Hosomi O., Nakashima Y., Mori S., and Kishi K. Structural requirement of a human deoxyribonuclease II for the development of the active enzyme form, revealed by site-directed mutagenesis. Biochem. Biophys. Res. Commun. 256 (1999) 591-594
36. Yasuda T., Takeshita H., Iida R., Ueki M., Nakajima T., Kaneko Y., Mogi K., Kominato Y., and Kishi K. A single amino acid substitution can shift the optimum pH of DNase I for enzyme activity: biochemical and molecular analysis of the piscine DNase I family. Biochim. Biophys. Acta 1672 (2004) 174-183
37. Yasuda T., Iida R., Ueki M., Kominato Y., Nakajima T., Takeshita H., Kobayashi T., and Kishi K. Molecular evolution of shark and other vertebrate DNases I. Eur. J. Biochem. 271 (2004) 4428-4435
38. Yasutomo K., Horiuchi T., Kagami S., Tsukamoto H., Hashimura C., Urushihara M., and Kuroda Y. Mutation of DNase1 in people with systemic lupus erythematosus. Nat. Genet. 28 (2001) 313-314