메뉴 건너뛰기




Volumn 68, Issue 3, 2007, Pages 770-778

β-strand recombination in tricalbin evolution and the origin of synaptotagmin-like C2 domains

Author keywords

strand recombination; C2 domains; Circular permutation; Protein structure evolution; Synaptotagmin; Tricalbin

Indexed keywords

CALCIUM BINDING PROTEIN; PROTEIN; SYNAPTOTAGMIN; TRICALBIN; UNCLASSIFIED DRUG;

EID: 34447527785     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21449     Document Type: Article
Times cited : (8)

References (36)
  • 1
    • 0030467967 scopus 로고    scopus 로고
    • The C2 domain calcium-binding motif: Structural and functional diversity
    • Nalefski EA, Falke JJ. The C2 domain calcium-binding motif: structural and functional diversity. Protein Sci 1996;5:2375-2390.
    • (1996) Protein Sci , vol.5 , pp. 2375-2390
    • Nalefski, E.A.1    Falke, J.J.2
  • 2
    • 0032568662 scopus 로고    scopus 로고
    • C2-domains, structure and function of a universal Ca2+-binding domain
    • Rizo J, Sudhof TC. C2-domains, structure and function of a universal Ca2+-binding domain. J Biol Chem 1998;273:15879-15882.
    • (1998) J Biol Chem , vol.273 , pp. 15879-15882
    • Rizo, J.1    Sudhof, T.C.2
  • 3
    • 0141750583 scopus 로고    scopus 로고
    • Functional recycling of C2 domains throughout evolution: A comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches
    • Jimenez JL, Smith GR, Contreras-Moreira B, Sgouros JG, Meunier FA, Bates PA, Schiavo G. Functional recycling of C2 domains throughout evolution: a comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches. J Mol Biol 2003;333:621-639.
    • (2003) J Mol Biol , vol.333 , pp. 621-639
    • Jimenez, J.L.1    Smith, G.R.2    Contreras-Moreira, B.3    Sgouros, J.G.4    Meunier, F.A.5    Bates, P.A.6    Schiavo, G.7
  • 4
    • 0029924329 scopus 로고    scopus 로고
    • Crystal structure of a mammalian phosphoinositide-specific phospholipase C delta
    • Essen LO, Perisic O, Cheung R, Katan M, Williams RL. Crystal structure of a mammalian phosphoinositide-specific phospholipase C delta. Nature 1996;380:595-602.
    • (1996) Nature , vol.380 , pp. 595-602
    • Essen, L.O.1    Perisic, O.2    Cheung, R.3    Katan, M.4    Williams, R.L.5
  • 5
    • 0032540860 scopus 로고    scopus 로고
    • Solution structure and membrane interactions of the C2 domain of cytosolic phospholipase A2
    • Xu GY, McDonagh T, Yu HA, Nalefski EA, Clark JD, Cumming DA. Solution structure and membrane interactions of the C2 domain of cytosolic phospholipase A2. J Mol Biol 1998;280:485-500.
    • (1998) J Mol Biol , vol.280 , pp. 485-500
    • Xu, G.Y.1    McDonagh, T.2    Yu, H.A.3    Nalefski, E.A.4    Clark, J.D.5    Cumming, D.A.6
  • 6
    • 0028986240 scopus 로고
    • Structure of the first C2 domain of synaptotagmin I: A novel Ca2+/ phospholipid-binding fold
    • Sutton RB, Davletov BA, Berghuis AM, Sudhof TC, Sprang SR. Structure of the first C2 domain of synaptotagmin I: a novel Ca2+/ phospholipid-binding fold. Cell 1995;80:929-938.
    • (1995) Cell , vol.80 , pp. 929-938
    • Sutton, R.B.1    Davletov, B.A.2    Berghuis, A.M.3    Sudhof, T.C.4    Sprang, S.R.5
  • 7
    • 0033571223 scopus 로고    scopus 로고
    • Ca(2+) bridges the C2 membrane-binding domain of protein kinase Calpha directly to phosphatidylserine
    • Verdaguer N, Corbalan-Garcia S, Ochoa WF, Fita I, Gomez-Fernandez JC. Ca(2+) bridges the C2 membrane-binding domain of protein kinase Calpha directly to phosphatidylserine. Embo J 1999;18: 6329-6338.
    • (1999) Embo J , vol.18 , pp. 6329-6338
    • Verdaguer, N.1    Corbalan-Garcia, S.2    Ochoa, W.F.3    Fita, I.4    Gomez-Fernandez, J.C.5
  • 8
    • 0035783063 scopus 로고    scopus 로고
    • Fold change in evolution of protein structures
    • Grishin NV. Fold change in evolution of protein structures. J Struct Biol 2001;134(2/3):167-185.
    • (2001) J Struct Biol , vol.134 , Issue.2-3 , pp. 167-185
    • Grishin, N.V.1
  • 9
    • 1842486857 scopus 로고    scopus 로고
    • The tricalbin C2 domains: Lipid-binding properties of a novel, synaptotagmin-like yeast protein family
    • Schulz TA, Creutz CE. The tricalbin C2 domains: lipid-binding properties of a novel, synaptotagmin-like yeast protein family. Biochemistry 2004;43:3987-3995.
    • (2004) Biochemistry , vol.43 , pp. 3987-3995
    • Schulz, T.A.1    Creutz, C.E.2
  • 10
    • 0027332736 scopus 로고
    • A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding
    • Davletov BA, Sudhof TC. A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding. J Biol Chem 1993;268:26386-26390.
    • (1993) J Biol Chem , vol.268 , pp. 26386-26390
    • Davletov, B.A.1    Sudhof, T.C.2
  • 11
    • 0035924571 scopus 로고    scopus 로고
    • Three-dimensional structure of the synaptotagmin 1 C2B-domain: Synaptotagmin 1 as a phospholipid binding machine
    • Fernandez I, Arac D, Ubach J, Gerber SH, Shin O, Gao Y, Anderson RG, Sudhof TC, Rizo J. Three-dimensional structure of the synaptotagmin 1 C2B-domain: synaptotagmin 1 as a phospholipid binding machine. Neuron 2001;32:1057-1069.
    • (2001) Neuron , vol.32 , pp. 1057-1069
    • Fernandez, I.1    Arac, D.2    Ubach, J.3    Gerber, S.H.4    Shin, O.5    Gao, Y.6    Anderson, R.G.7    Sudhof, T.C.8    Rizo, J.9
  • 12
    • 0028859443 scopus 로고
    • Functional diversity of C2 domains of synaptotagmin family. Mutational analysis of inositol high polyphosphate binding domain
    • Fukuda M, Kojima T, Aruga J, Niinobe M, Mikoshiba K. Functional diversity of C2 domains of synaptotagmin family. Mutational analysis of inositol high polyphosphate binding domain. J Biol Chem 1995;270:26523-26527.
    • (1995) J Biol Chem , vol.270 , pp. 26523-26527
    • Fukuda, M.1    Kojima, T.2    Aruga, J.3    Niinobe, M.4    Mikoshiba, K.5
  • 13
    • 1842477457 scopus 로고    scopus 로고
    • Synaptotagmin interaction with the syntaxin/SNAP-25 dimer is mediated by an evolutionarily conserved motif and is sensitive to inositol hexakisphosphate
    • Rickman C, Archer DA, Meunier FA, Craxton M, Fukuda M, Burgoyne RD, Davletov B. Synaptotagmin interaction with the syntaxin/SNAP-25 dimer is mediated by an evolutionarily conserved motif and is sensitive to inositol hexakisphosphate. J Biol Chem 2004;279:12574-12579.
    • (2004) J Biol Chem , vol.279 , pp. 12574-12579
    • Rickman, C.1    Archer, D.A.2    Meunier, F.A.3    Craxton, M.4    Fukuda, M.5    Burgoyne, R.D.6    Davletov, B.7
  • 14
    • 2542609835 scopus 로고    scopus 로고
    • Characterization of the yeast tricalbins: Membrane-bound multi-C2-domain proteins that form complexes involved in membrane trafficking
    • Creutz CE, Snyder SL, Schulz TA. Characterization of the yeast tricalbins: membrane-bound multi-C2-domain proteins that form complexes involved in membrane trafficking. Cell Mol Life Sci 2004;61:1208-1220.
    • (2004) Cell Mol Life Sci , vol.61 , pp. 1208-1220
    • Creutz, C.E.1    Snyder, S.L.2    Schulz, T.A.3
  • 15
    • 33644905848 scopus 로고    scopus 로고
    • Diverse membrane-associated proteins contain a novel SMP domain
    • Lee I, Hong W. Diverse membrane-associated proteins contain a novel SMP domain. FASEB J 2006;20:202-206.
    • (2006) FASEB J , vol.20 , pp. 202-206
    • Lee, I.1    Hong, W.2
  • 16
    • 33644873213 scopus 로고    scopus 로고
    • Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 2006;34(Database issue): D187-D191.
    • Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 2006;34(Database issue): D187-D191.
  • 17
    • 18844434719 scopus 로고    scopus 로고
    • Does structural and chemical divergence play a role in precluding undesirable protein interactions?
    • Jimenez JL. Does structural and chemical divergence play a role in precluding undesirable protein interactions? Proteins 2005;59:757-764.
    • (2005) Proteins , vol.59 , pp. 757-764
    • Jimenez, J.L.1
  • 18
    • 0035943428 scopus 로고    scopus 로고
    • Structure of the C2 domain from novel protein kinase Cepsilon. A membrane binding model for Ca(2+)-independent C2 domains
    • Ochoa WF, Garcia-Garcia J, Fita I, Corbalan-Garcia S, Verdaguer N, Gomez-Fernandez JC. Structure of the C2 domain from novel protein kinase Cepsilon. A membrane binding model for Ca(2+)-independent C2 domains. J Mol Biol 2001;311:837-849.
    • (2001) J Mol Biol , vol.311 , pp. 837-849
    • Ochoa, W.F.1    Garcia-Garcia, J.2    Fita, I.3    Corbalan-Garcia, S.4    Verdaguer, N.5    Gomez-Fernandez, J.C.6
  • 20
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR. Profile hidden Markov models. Bioinformatics 1998;14: 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 21
    • 0033990046 scopus 로고    scopus 로고
    • Phylogenetic analysis using PHYLIP
    • Retief JD. Phylogenetic analysis using PHYLIP. Methods Mol Biol 2000;132:243-258.
    • (2000) Methods Mol Biol , vol.132 , pp. 243-258
    • Retief, J.D.1
  • 22
    • 0033990087 scopus 로고    scopus 로고
    • The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment
    • Aiyar A. The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment. Methods Mol Biol 2000;132:221-241.
    • (2000) Methods Mol Biol , vol.132 , pp. 221-241
    • Aiyar, A.1
  • 23
    • 0030933176 scopus 로고    scopus 로고
    • A ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1
    • Essen LO, Perisic O, Lynch DE, Katan M, Williams RL. A ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1. Biochemistry 1997;36:2753-2762.
    • (1997) Biochemistry , vol.36 , pp. 2753-2762
    • Essen, L.O.1    Perisic, O.2    Lynch, D.E.3    Katan, M.4    Williams, R.L.5
  • 24
    • 9444224969 scopus 로고    scopus 로고
    • Synaptotagmin gene content of the sequenced genomes
    • Craxton M. Synaptotagmin gene content of the sequenced genomes. BMC Genomics 2004;5:43.
    • (2004) BMC Genomics , vol.5 , pp. 43
    • Craxton, M.1
  • 25
    • 0038647468 scopus 로고    scopus 로고
    • Molecular cloning, expression, and characterization of a novel class of synaptotagmin (Syt XIV) conserved from Drosophila to humans
    • Fukuda M. Molecular cloning, expression, and characterization of a novel class of synaptotagmin (Syt XIV) conserved from Drosophila to humans. J Biochem (Tokyo) 2003;133:641-649.
    • (2003) J Biochem (Tokyo) , vol.133 , pp. 641-649
    • Fukuda, M.1
  • 27
    • 0842269784 scopus 로고    scopus 로고
    • A conformational switch in the Piccolo C2A domain regulated by alternative splicing
    • Garcia J, Gerber SH, Sugita S, Sudhof TC, Rizo J. A conformational switch in the Piccolo C2A domain regulated by alternative splicing. Nat Struct Mol Biol 2004;11:45-53.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 45-53
    • Garcia, J.1    Gerber, S.H.2    Sugita, S.3    Sudhof, T.C.4    Rizo, J.5
  • 30
    • 0032951129 scopus 로고    scopus 로고
    • Cloning and preliminary characterization of a 121 kDa protein with multiple predicted C2 domains
    • Morris NJ, Ross SA, Neveu JM, Lane WS, Lienhard GE. Cloning and preliminary characterization of a 121 kDa protein with multiple predicted C2 domains. Biochim Biophys Acta 1999;1431:525-530.
    • (1999) Biochim Biophys Acta , vol.1431 , pp. 525-530
    • Morris, N.J.1    Ross, S.A.2    Neveu, J.M.3    Lane, W.S.4    Lienhard, G.E.5
  • 31
    • 33646268799 scopus 로고    scopus 로고
    • Domain deletions and substitutions in the modular protein evolution
    • Weiner J III, Beaussart F, Bornberg-Bauer E. Domain deletions and substitutions in the modular protein evolution. FEBS J 2006;273: 2037-2047.
    • (2006) FEBS J , vol.273 , pp. 2037-2047
    • Weiner III, J.1    Beaussart, F.2    Bornberg-Bauer, E.3
  • 33
    • 0033013317 scopus 로고    scopus 로고
    • Circular permutations in the molecular evolution of DNA methyltransferases
    • Jeltsch A. Circular permutations in the molecular evolution of DNA methyltransferases. J Mol Evol 1999;49:161-164.
    • (1999) J Mol Evol , vol.49 , pp. 161-164
    • Jeltsch, A.1
  • 34
    • 0029000740 scopus 로고
    • Swaposins: Circular permutations within genes encoding saposin homologues
    • Ponting CP, Russell RB. Swaposins: circular permutations within genes encoding saposin homologues. Trends Biochem Sci 1995;20: 179-180.
    • (1995) Trends Biochem Sci , vol.20 , pp. 179-180
    • Ponting, C.P.1    Russell, R.B.2
  • 35
    • 33750016048 scopus 로고    scopus 로고
    • Duplication, divergence and formation of novel protein topologies
    • Vogel C, Morea V. Duplication, divergence and formation of novel protein topologies. Bioessays 2006;28:973-978.
    • (2006) Bioessays , vol.28 , pp. 973-978
    • Vogel, C.1    Morea, V.2
  • 36
    • 33747453911 scopus 로고    scopus 로고
    • Position of synaptotagmin I at the membrane interface: Cooperative interactions of tandem C2 domains
    • Herrick DZ, Sterbling S, Rasch KA, Hinderliter A, Cafiso DS. Position of synaptotagmin I at the membrane interface: cooperative interactions of tandem C2 domains. Biochemistry 2006;45:9668-9674.
    • (2006) Biochemistry , vol.45 , pp. 9668-9674
    • Herrick, D.Z.1    Sterbling, S.2    Rasch, K.A.3    Hinderliter, A.4    Cafiso, D.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.