Synaptotagmin gene content of the sequenced genomes

BMC Genomics

Volumn 5, Issue , 2004, Pages

  Craxton, Molly ^a  

^a MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; NUCLEOTIDE; SYNAPTOTAGMIN; CALCIUM BINDING PROTEIN; MEMBRANE PROTEIN; NERVE PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ANOPHELES; ARABIDOPSIS; ARTICLE; CAENORHABDITIS; CHORDATA; CONTROLLED STUDY; CORRELATION ANALYSIS; DNA LIBRARY; DNA SCREENING; DROSOPHILA; EUKARYOTE; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; GENOME ANALYSIS; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; PLANT GENETICS; PUFFER FISH; RAT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE; SEQUENCE DATABASE; SPECIES DIFFERENCE; ALTERNATIVE RNA SPLICING; CAENORHABDITIS ELEGANS; CIONA INTESTINALIS; COMPARATIVE STUDY; DROSOPHILA MELANOGASTER; GENE; GENETICS; GENOME; MOLECULAR GENETICS; MOUSE; MULTIGENE FAMILY; SEQUENCE HOMOLOGY; SPRAGUE DAWLEY RAT; ZEBRA FISH;

ANIMALIA; ARABIDOPSIS; CAENORHABDITIS; CIONA; DANIO; EMBRYOPHYTA; EUKARYOTA; MAMMALIA; MUS; ORYZA; TAKIFUGU;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; ANOPHELES; ARABIDOPSIS; CAENORHABDITIS ELEGANS; CALCIUM-BINDING PROTEINS; CIONA INTESTINALIS; DROSOPHILA MELANOGASTER; GENES; GENOME; HUMANS; MEMBRANE GLYCOPROTEINS; MICE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; NERVE TISSUE PROTEINS; ORYZA SATIVA; PHYLOGENY; RATS; RATS, SPRAGUE-DAWLEY; SEQUENCE HOMOLOGY; SYNAPTOTAGMINS; TAKIFUGU; ZEBRAFISH;

EID: 9444224969     PISSN: 14712164     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2164-5-43     Document Type: Article

References (38)

1. Perin MS, Fried VA, Mignery GA, Jahn R, Südhof TC: Phospholipid binding by a synaptic vesicle protein homologous to the regulatory region of protein kinase C. Nature 1990, 345: 60-263.
2. Geppert M, Archer BT III, Südhof TC: Synaptotagmin II a novel differentially distributed form of synaptotagmin. J Biol Chem 1991, 266:13548-13552.
3. Mizuta M, Inagaki N, Nemoto Y, Matsukura S, Takahashi M, Seino S: Synaptotagmin III is a novel isoform of rat synaptotagmin expressed in endocrine and neuronal cells. J Biol Chem 1994, 269:11675-11678.
4. Hillbush BS, Morgan JI: A third synaptotagmin gene, Syt3, in the mouse. Proc Natl Acad Sci 1994, 91:8195-8199.
5. Craxton M, Goedert M: Synaptotagmin V: a novel synaptotagmin isoform expressed in rat brain. FEBS Lett 1995, 361:196-200.
6. Hudson AW, Birnbaum MJ: Identification of a nonneuronal isoform of synaptotagmin. Proc Natl Acad Sci 1995, 92: 895-5899.
7. 2+-dependent and -independent activities of neural and non-neural synaptotagmins. Nature 1995, 375:594-599.
8. Babity JM, Armstrong JN, Plumier J-CL, Currie RW, Robertson HA: A novel seizure-induced synaptotagmin gene identified by differential display. Proc Natl Acad Sci 1997, 94: 638-2641.
9. Thompson CC: Thyroid hormone-responsive genes in developing cerebellum include a novel synaptotagmin and a hairless homolog. J Neurosci 1996, 16:7832-7840.
10. 2+ binding. J Biol Chem 1997, 272:14314-14319.
11. von Poser C, Südhof TC: Synaptotagmin 13: structure and expression of a novel synaptotagmin. Eur J Cell Biol 2001, 80:41-47.
12. Fukuda M, Mikoshiba K: Characterization of KIAA1427 protein as an atypical synaptotagmin (SytXIII). Biochem J 2001, 354:249-257.
13. Craxton M: Genomic analysis of synaptotagmin genes. Genomics 2001, 77:43-49.
14. Fukuda M: Molecular cloning, expression, and characterization of a novel class of synaptotagmin (SytXIV) conserved from Drosophila to humans. J Biochem 2003, 133:641-649.
15. Fukuda M: Molecular cloning and characterization of human, rat, and mouse synaptotagmin XV. Biochem Biophys Res Commun 2003, 306:64-71.
16. 2+ sensor for transmitter release at a central synapse. Cell 1994, 79:717-727.
17. Südhof TC: Synaptotagmins: why so many? J Biol Chem 2002, 277:7629-7632.
18. 2+ -triggered exocytosis. Biochem J 2002, 366:1-13.
19. Fukuda M, Mikoshiba K: A novel alternatively spliced variant of synaptotagmin VI lacking a transmembrane domain. J Biol Chem 1999, 274:31428-31434.
20. Craxton M, Goedert M: Alternative splicing of synaptotagmins involving transmembrane exon skipping. FEBS Lett 1999, 460:417-422.
21. 2+ sensor in exocytosis. Neuron 2001, 30:459-473.
22. Hoopengardner B, Bhalla T, Staber C, Reenan R: Nervous system targets of RNA editing identified by comparative genomics. Science 2003, 301:832-836.
23. National Center for Biotechnology Information [http://www.ncbi.nlm.nih.gov]
24. European Bioinformatics Institue [http://www.ebi.ac.uk]
25. Ensembl Genome Browser [http://www.ensembl.org]
26. Joint Genome Initiative Ciona intestinalis v1.0 [http://genome.jgi-psf.org/ciona4/ciona4.home.html]
27. Staden Package WWW site [http://www.mrc-lmb.cam.ac.uk/pubseq/staden_home.html]
28. Pearson WR: In Methods in Molecular Biology, Computer analysis of sequence data, PartII Edited by: Griffin AM, Griffin HG. New Jersey: Humana Press; 1994:365-389.
29. Corpet F: Multiple sequence alignment with hierarchical clustering. Nuc Acids Res 1988, 16:10881-10890.
30. Nakhost A, Houeland G, Castelluci VF, Sossin W: Differential regulation of transmitter release by alternatively spliced froms of synaptotagmin 1. J Neurosci 2003, 23:6238-6244.
31. Nakhost A, Houeland G, Blandford VE, Castelluci VF, Sossin W: Identification and characterization of a novel C2B splice variant of synaptotagmin I. J Neurochem 2004, 89:354-363.
32. Bagalá C, Kolev V, Mandinova A, Soldi R, Mouta C, Graziani I, Prudovsky I, Macaig T: The alternative translation of synaptotagmin 1 mediates the non-classical release of FGF1. Biochem Biophys Res Commun 2003, 310:1041-1047.
33. Perin MS, Brose N, Jahn R, Südhof TC: Domain structure of synaptotagmin (p65). J Biol Chem 1991, 266:623-629.
34. Katsuyama Y, Matsumoto J, Okada T, Ohtsuka Y, Chen L, Okado H, Okamura Y: Regulation of synaptotagmin gene expression during ascidian embryogenesis. Dev Biol 2002, 244:293-304.
35. Schulz TA, Creutz CE: The tricalbin C2 domains: lipid-binding properties of a novel, synaptotagmin-like yeast protein family. Biochemistry 2004, 43:3987-3995.
36. Jiménez JL, Smith GR, Contreras-Moreira B, Sgouros JG, Meunier FA, Bates PA, Schiavo G: Functional recycling of C2 domains throughout evolution: A comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches. J Mol Biol 2003, 333:621-639.
37. 2+/ phospholipid-binding fold. Cell 1995, 80:929-938.
38. Sutton RB, Ernst JA, Brunger AT: Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca(+2)-independent snare complex interaction. J Cell Biol 1999, 147:589-598.