-
1
-
-
33646191642
-
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.
-
Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouche N, Gasciolli V, Vaucheret H (2006) DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol 16:927-932
-
(2006)
Curr Biol
, vol.16
, pp. 927-932
-
-
Adenot, X.1
Elmayan, T.2
Lauressergues, D.3
Boutet, S.4
Bouche, N.5
Gasciolli, V.6
Vaucheret, H.7
-
2
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana.
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36:1282-1290
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
3
-
-
17444430392
-
MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants.
-
Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121:207-221
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
4
-
-
0037370020
-
A uniform system for microRNA annotation.
-
Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T (2003) A uniform system for microRNA annotation. RNA 9:277-279
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
Chen, X.6
Dreyfuss, G.7
Eddy, S.R.8
Griffiths-Jones, S.9
Marshall, M.10
Matzke, M.11
Ruvkun, G.12
Tuschl, T.13
-
5
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes.
-
Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15:2730-2741
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
6
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants.
-
Axtell MJ, Bartel DP (2005) Antiquity of microRNAs and their targets in land plants. Plant Cell 17:1658-1673
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
8
-
-
13944263944
-
The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.
-
Baker CC, Sieber P, Wellmer F, Meyerowitz EM (2005) The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis. Curr Biol 15:303-315
-
(2005)
Curr Biol
, vol.15
, pp. 303-315
-
-
Baker, C.C.1
Sieber, P.2
Wellmer, F.3
Meyerowitz, E.M.4
-
9
-
-
10244243802
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
-
Bonnet E, Wuyts J, Rouze P, Van de Peer Y (2004) Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20:2911-2917
-
(2004)
Bioinformatics
, vol.20
, pp. 2911-2917
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
Van De Peer, Y.4
-
10
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.
-
Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK (2005) Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123:1279-1291
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
11
-
-
19544371336
-
Comparative profiling of tomato fruits and leaves evidences a complex modulation of global transcript profiles.
-
Carbone F, Pizzichini D, Giuliano G, Rosati C, Perrotta G (2005) Comparative profiling of tomato fruits and leaves evidences a complex modulation of global transcript profiles. Plant Sci 169:165-175
-
(2005)
Plant Sci
, vol.169
, pp. 165-175
-
-
Carbone, F.1
Pizzichini, D.2
Giuliano, G.3
Rosati, C.4
Perrotta, G.5
-
12
-
-
33745614596
-
Metabolic regulation underlying tomato fruit development.
-
Carrari F, Fernie AR (2006) Metabolic regulation underlying tomato fruit development. J Exp Bot 57:1883-1897
-
(2006)
J Exp Bot
, vol.57
, pp. 1883-1897
-
-
Carrari, F.1
Fernie, A.R.2
-
13
-
-
1442305898
-
RNA silencing genes control de novo DNA methylation.
-
Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE (2004) RNA silencing genes control de novo DNA methylation. Science 303:1336
-
(2004)
Science
, vol.303
, pp. 1336
-
-
Chan, S.W.1
Zilberman, D.2
Xie, Z.3
Johansen, L.K.4
Carrington, J.C.5
Jacobsen, S.E.6
-
14
-
-
33644873463
-
EMBL nucleotide sequence database: Developments in 2005.
-
Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, Kanz C, Kulikova T, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, McHale M, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Sobhany S, Stoehr P, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R (2006) EMBL nucleotide sequence database: developments in 2005. Nucleic Acids Res 34:D10-D15
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Cochrane, G.1
Aldebert, P.2
Althorpe, N.3
Andersson, M.4
Baker, W.5
Baldwin, A.6
Bates, K.7
Bhattacharyya, S.8
Browne, P.9
Van Den Broek, A.10
Castro, M.11
Duggan, K.12
Eberhardt, R.13
Faruque, N.14
Gamble, J.15
Kanz, C.16
Kulikova, T.17
Lee, C.18
Leinonen, R.19
Lin, Q.20
Lombard, V.21
Lopez, R.22
McHale, M.23
McWilliam, H.24
Mukherjee, G.25
Nardone, F.26
Pastor, M.P.27
Sobhany, S.28
Stoehr, P.29
Tzouvara, K.30
Vaughan, R.31
Wu, D.32
Zhu, W.33
Apweiler, R.34
more..
-
15
-
-
0027194074
-
Functional analysis of cymbidium ringspot virus genome.
-
Dalmay T, Rubino L, Burgyan J, Kollar A, Russo M (1993) Functional analysis of cymbidium ringspot virus genome. Virology 194:697-704
-
(1993)
Virology
, vol.194
, pp. 697-704
-
-
Dalmay, T.1
Rubino, L.2
Burgyan, J.3
Kollar, A.4
Russo, M.5
-
16
-
-
4544253463
-
Comprehensive EST analysis of tomato and comparative genomics of fruit ripening.
-
Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ (2004) Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J 40:47-59
-
(2004)
Plant J
, vol.40
, pp. 47-59
-
-
Fei, Z.1
Tang, X.2
Alba, R.M.3
White, J.A.4
Ronning, C.M.5
Martin, G.B.6
Tanksley, S.D.7
Giovannoni, J.J.8
-
17
-
-
23944483216
-
Partially redundant functions of Arabidopsis DICERlike enzymes and a role for DCL4 in producing trans-acting siRNAs.
-
Gasciolli V, Mallory AC, Bartel DP, Vaucheret H (2005) Partially redundant functions of Arabidopsis DICERlike enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 15:1494-1500
-
(2005)
Curr Biol
, vol.15
, pp. 1494-1500
-
-
Gasciolli, V.1
Mallory, A.C.2
Bartel, D.P.3
Vaucheret, H.4
-
18
-
-
2942690153
-
Genetic regulation of fruit development and ripening.
-
Giovannoni JJ (2004) Genetic regulation of fruit development and ripening. Plant Cell 16:S170-S180
-
(2004)
Plant Cell
, vol.16
-
-
Giovannoni, J.J.1
-
19
-
-
26944452405
-
Pathways through the small RNA world of plants.
-
Herr AJ (2005) Pathways through the small RNA world of plants. FEBS Lett 579:5879-5888
-
(2005)
FEBS Lett
, vol.579
, pp. 5879-5888
-
-
Herr, A.J.1
-
20
-
-
0043123153
-
Vienna RNA secondary structure server.
-
Hofacker IL (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31:3429-3431
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
24
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.
-
Llave C, Xie Z, Kasschau KD, Carrington JC (2002b) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297:2053-2056
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
25
-
-
27744471144
-
Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis.
-
Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL (2005a) Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 17:2186-2203
-
(2005)
Plant Cell
, vol.17
, pp. 2186-2203
-
-
Lu, S.1
Sun, Y.H.2
Shi, R.3
Clark, C.4
Li, L.5
Chiang, V.L.6
-
26
-
-
24644490196
-
Elucidation of the small RNA component of the transcriptome.
-
Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ (2005b) Elucidation of the small RNA component of the transcriptome. Science 309:1567-1569
-
(2005)
Science
, vol.309
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
27
-
-
33749404806
-
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.
-
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC (2006) MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res 16:1276-1288
-
(2006)
Genome Res
, vol.16
, pp. 1276-1288
-
-
Lu, C.1
Kulkarni, K.2
Souret, F.F.3
Muthuvalliappan, R.4
Tej, S.S.5
Poethig, R.S.6
Henderson, I.R.7
Jacobsen, S.E.8
Wang, W.9
Green, P.J.10
Meyers, B.C.11
-
28
-
-
33746513103
-
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.
-
Manning K, Tor M, Poole M, Hong Y, Thompson AJ, King GJ, Giovannoni JJ, Seymour GB (2006) A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet 38:948-52
-
(2006)
Nat Genet
, vol.38
, pp. 948-52
-
-
Manning, K.1
Tor, M.2
Poole, M.3
Hong, Y.4
Thompson, A.J.5
King, G.J.6
Giovannoni, J.J.7
Seymour, G.B.8
-
29
-
-
27244454556
-
The SOL genomics network: A comparative resource for Solanaceae biology and beyond.
-
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD (2005) The SOL genomics network: a comparative resource for Solanaceae biology and beyond. Plant Physiol 138:1310-1317
-
(2005)
Plant Physiol
, vol.138
, pp. 1310-1317
-
-
Mueller, L.A.1
Solow, T.H.2
Taylor, N.3
Skwarecki, B.4
Buels, R.5
Binns, J.6
Lin, C.7
Wright, M.H.8
Ahrens, R.9
Wang, Y.10
Herbst, E.V.11
Keyder, E.R.12
Menda, N.13
Zamir, D.14
Tanksley, S.D.15
-
30
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs.
-
Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425:257-263
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
Carrington, J.C.6
Weigel, D.7
-
31
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.
-
Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12:1484-1495
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
32
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNA in Arabidopsis.
-
Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS (2004) SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNA in Arabidopsis. Genes Dev 18:2368-2379
-
(2004)
Genes Dev
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
33
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing centre.
-
Pontes O, Fei Li C, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS (2006) The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing centre. Cell 126:79-92
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
Fei Li, C.2
Costa Nunes, P.3
Haag, J.4
Ream, T.5
Vitins, A.6
Jacobsen, S.E.7
Pikaard, C.S.8
-
34
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20:3407-3425
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
35
-
-
33748793116
-
Analysis of small RNAs in the malaria parasite and its red blood cell host.
-
Rathjen T, Nicol C, McConkey G, Dalmay T (2006) Analysis of small RNAs in the malaria parasite and its red blood cell host. FEBS Lett 580:5185-5188
-
(2006)
FEBS Lett
, vol.580
, pp. 5185-5188
-
-
Rathjen, T.1
Nicol, C.2
McConkey, G.3
Dalmay, T.4
-
36
-
-
0036645146
-
MicroRNAs in plants.
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNAs in plants. Genes Dev 16:1616-1626
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
37
-
-
0037249498
-
The Arabidopsis information resource (TAIR): A model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.
-
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, Weems DC, Wu Y, Xu I, Yoo D, Yoon J, Zhang P (2003) The Arabidopsis information resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 31:224-228
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 224-228
-
-
Rhee, S.Y.1
Beavis, W.2
Berardini, T.Z.3
Chen, G.4
Dixon, D.5
Doyle, A.6
Garcia-Hernandez, M.7
Huala, E.8
Lander, G.9
Montoya, M.10
Miller, N.11
Mueller, L.A.12
Mundodi, S.13
Reiser, L.14
Tacklind, J.15
Weems, D.C.16
Wu, Y.17
Xu, I.18
Yoo, D.19
Yoon, J.20
Zhang, P.21
more..
-
38
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.
-
Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16:2001-2019
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
39
-
-
0035984046
-
Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing.
-
Van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14:1441-1456
-
(2002)
Plant Cell
, vol.14
, pp. 1441-1456
-
-
Van Der Hoeven, R.1
Ronning, C.2
Giovannoni, J.3
Martin, G.4
Tanksley, S.5
-
40
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.
-
Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crete P (2004) Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell 16:69-79
-
(2004)
Mol Cell
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
Hilbert, J.L.7
Bartel, D.P.8
Crete, P.9
-
41
-
-
0037066465
-
A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus.
-
Vrebalov J, Ruezinsky D, Padmanabhan V, White R, Medrano D, Drake R, Schuch W, Giovannoni J (2002) A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus. Science 296:343-346
-
(2002)
Science
, vol.296
, pp. 343-346
-
-
Vrebalov, J.1
Ruezinsky, D.2
Padmanabhan, V.3
White, R.4
Medrano, D.5
Drake, R.6
Schuch, W.7
Giovannoni, J.8
-
42
-
-
24944443408
-
Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes.
-
Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC (2005) Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 132:3657-3668
-
(2005)
Development
, vol.132
, pp. 3657-3668
-
-
Williams, L.1
Grigg, S.P.2
Xie, M.3
Christensen, S.4
Fletcher, J.C.5
-
43
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants.
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2:E104
-
(2004)
PLoS Biol
, vol.2
, pp. 104
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
44
-
-
24644481318
-
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.
-
Xie Z, Allen E, Wilken A, Carrington JC (2005) DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci USA 102:12984-12989
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12984-12989
-
-
Xie, Z.1
Allen, E.2
Wilken, A.3
Carrington, J.C.4
-
45
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.
-
Yoshikawa M, Peragine A, Park MY, Poethig RS (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 19:2164-2175
-
(2005)
Genes Dev
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
46
-
-
33646830110
-
Conservation and divergence of plant microRNA genes.
-
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA (2006) Conservation and divergence of plant microRNA genes. Plant J 46:243-259
-
(2006)
Plant J
, vol.46
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
|