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Volumn 226, Issue 3, 2007, Pages 709-717

Identification of novel small RNAs in tomato (Solanum lycopersicum)

Author keywords

Fruit; Gene silencing; Small RNA; Tomato

Indexed keywords

MICRORNA;

EID: 34447121300     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-007-0518-y     Document Type: Article
Times cited : (86)

References (46)
  • 2
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana.
    • Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36:1282-1290
    • (2004) Nat Genet , vol.36 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 3
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants.
    • Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121:207-221
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 5
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes.
    • Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15:2730-2741
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 6
    • 22144457368 scopus 로고    scopus 로고
    • Antiquity of microRNAs and their targets in land plants.
    • Axtell MJ, Bartel DP (2005) Antiquity of microRNAs and their targets in land plants. Plant Cell 17:1658-1673
    • (2005) Plant Cell , vol.17 , pp. 1658-1673
    • Axtell, M.J.1    Bartel, D.P.2
  • 7
    • 33750440526 scopus 로고    scopus 로고
    • A two-hit trigger for siRNA biogenesis in plants.
    • Axtell MJ, Jan C, Rajagopalan R, Bartel DP (2006) A two-hit trigger for siRNA biogenesis in plants. Cell 127:565-577
    • (2006) Cell , vol.127 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.4
  • 8
    • 13944263944 scopus 로고    scopus 로고
    • The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.
    • Baker CC, Sieber P, Wellmer F, Meyerowitz EM (2005) The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis. Curr Biol 15:303-315
    • (2005) Curr Biol , vol.15 , pp. 303-315
    • Baker, C.C.1    Sieber, P.2    Wellmer, F.3    Meyerowitz, E.M.4
  • 9
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
    • Bonnet E, Wuyts J, Rouze P, Van de Peer Y (2004) Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20:2911-2917
    • (2004) Bioinformatics , vol.20 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van De Peer, Y.4
  • 10
    • 29244490062 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.
    • Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK (2005) Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123:1279-1291
    • (2005) Cell , vol.123 , pp. 1279-1291
    • Borsani, O.1    Zhu, J.2    Verslues, P.E.3    Sunkar, R.4    Zhu, J.K.5
  • 11
    • 19544371336 scopus 로고    scopus 로고
    • Comparative profiling of tomato fruits and leaves evidences a complex modulation of global transcript profiles.
    • Carbone F, Pizzichini D, Giuliano G, Rosati C, Perrotta G (2005) Comparative profiling of tomato fruits and leaves evidences a complex modulation of global transcript profiles. Plant Sci 169:165-175
    • (2005) Plant Sci , vol.169 , pp. 165-175
    • Carbone, F.1    Pizzichini, D.2    Giuliano, G.3    Rosati, C.4    Perrotta, G.5
  • 12
    • 33745614596 scopus 로고    scopus 로고
    • Metabolic regulation underlying tomato fruit development.
    • Carrari F, Fernie AR (2006) Metabolic regulation underlying tomato fruit development. J Exp Bot 57:1883-1897
    • (2006) J Exp Bot , vol.57 , pp. 1883-1897
    • Carrari, F.1    Fernie, A.R.2
  • 15
    • 0027194074 scopus 로고
    • Functional analysis of cymbidium ringspot virus genome.
    • Dalmay T, Rubino L, Burgyan J, Kollar A, Russo M (1993) Functional analysis of cymbidium ringspot virus genome. Virology 194:697-704
    • (1993) Virology , vol.194 , pp. 697-704
    • Dalmay, T.1    Rubino, L.2    Burgyan, J.3    Kollar, A.4    Russo, M.5
  • 17
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICERlike enzymes and a role for DCL4 in producing trans-acting siRNAs.
    • Gasciolli V, Mallory AC, Bartel DP, Vaucheret H (2005) Partially redundant functions of Arabidopsis DICERlike enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 15:1494-1500
    • (2005) Curr Biol , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.C.2    Bartel, D.P.3    Vaucheret, H.4
  • 18
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening.
    • Giovannoni JJ (2004) Genetic regulation of fruit development and ripening. Plant Cell 16:S170-S180
    • (2004) Plant Cell , vol.16
    • Giovannoni, J.J.1
  • 19
    • 26944452405 scopus 로고    scopus 로고
    • Pathways through the small RNA world of plants.
    • Herr AJ (2005) Pathways through the small RNA world of plants. FEBS Lett 579:5879-5888
    • (2005) FEBS Lett , vol.579 , pp. 5879-5888
    • Herr, A.J.1
  • 20
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server.
    • Hofacker IL (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31:3429-3431
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 24
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.
    • Llave C, Xie Z, Kasschau KD, Carrington JC (2002b) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297:2053-2056
    • (2002) Science , vol.297 , pp. 2053-2056
    • Llave, C.1    Xie, Z.2    Kasschau, K.D.3    Carrington, J.C.4
  • 25
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis.
    • Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL (2005a) Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 17:2186-2203
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 28
    • 33746513103 scopus 로고    scopus 로고
    • A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.
    • Manning K, Tor M, Poole M, Hong Y, Thompson AJ, King GJ, Giovannoni JJ, Seymour GB (2006) A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet 38:948-52
    • (2006) Nat Genet , vol.38 , pp. 948-52
    • Manning, K.1    Tor, M.2    Poole, M.3    Hong, Y.4    Thompson, A.J.5    King, G.J.6    Giovannoni, J.J.7    Seymour, G.B.8
  • 31
    • 0037015239 scopus 로고    scopus 로고
    • CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.
    • Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12:1484-1495
    • (2002) Curr Biol , vol.12 , pp. 1484-1495
    • Park, W.1    Li, J.2    Song, R.3    Messing, J.4    Chen, X.5
  • 32
    • 4644286235 scopus 로고    scopus 로고
    • SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNA in Arabidopsis.
    • Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS (2004) SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNA in Arabidopsis. Genes Dev 18:2368-2379
    • (2004) Genes Dev , vol.18 , pp. 2368-2379
    • Peragine, A.1    Yoshikawa, M.2    Wu, G.3    Albrecht, H.L.4    Poethig, R.S.5
  • 34
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20:3407-3425
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 35
    • 33748793116 scopus 로고    scopus 로고
    • Analysis of small RNAs in the malaria parasite and its red blood cell host.
    • Rathjen T, Nicol C, McConkey G, Dalmay T (2006) Analysis of small RNAs in the malaria parasite and its red blood cell host. FEBS Lett 580:5185-5188
    • (2006) FEBS Lett , vol.580 , pp. 5185-5188
    • Rathjen, T.1    Nicol, C.2    McConkey, G.3    Dalmay, T.4
  • 38
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.
    • Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16:2001-2019
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 39
    • 0035984046 scopus 로고    scopus 로고
    • Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing.
    • Van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14:1441-1456
    • (2002) Plant Cell , vol.14 , pp. 1441-1456
    • Van Der Hoeven, R.1    Ronning, C.2    Giovannoni, J.3    Martin, G.4    Tanksley, S.5
  • 42
    • 24944443408 scopus 로고    scopus 로고
    • Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes.
    • Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC (2005) Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 132:3657-3668
    • (2005) Development , vol.132 , pp. 3657-3668
    • Williams, L.1    Grigg, S.P.2    Xie, M.3    Christensen, S.4    Fletcher, J.C.5
  • 44
    • 24644481318 scopus 로고    scopus 로고
    • DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.
    • Xie Z, Allen E, Wilken A, Carrington JC (2005) DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci USA 102:12984-12989
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12984-12989
    • Xie, Z.1    Allen, E.2    Wilken, A.3    Carrington, J.C.4
  • 45
    • 24944491201 scopus 로고    scopus 로고
    • A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.
    • Yoshikawa M, Peragine A, Park MY, Poethig RS (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 19:2164-2175
    • (2005) Genes Dev , vol.19 , pp. 2164-2175
    • Yoshikawa, M.1    Peragine, A.2    Park, M.Y.3    Poethig, R.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.