-
1
-
-
0037133942
-
Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions
-
Kiss T. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109 (2002) 145-148
-
(2002)
Cell
, vol.109
, pp. 145-148
-
-
Kiss, T.1
-
2
-
-
27844495652
-
Small non-coding RNAs in Archaea
-
Dennis P.P., and Omer A. Small non-coding RNAs in Archaea. Curr Opin Microbiol 8 (2005) 685-694
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 685-694
-
-
Dennis, P.P.1
Omer, A.2
-
3
-
-
19444374397
-
The many facets of H/ACA ribonucleoproteins
-
Meier U.T. The many facets of H/ACA ribonucleoproteins. Chromosoma 114 (2005) 1-14
-
(2005)
Chromosoma
, vol.114
, pp. 1-14
-
-
Meier, U.T.1
-
4
-
-
18844397555
-
RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP
-
The authors assembled, for the first time, an enzymatically active H/ACA RNP from four recombinant proteins (Cbf5, Nop10, L7Ae and Gar1) and guide RNA. This study was a major step towards unveiling the structural organization of H/ACA RNP.
-
Baker D.L., Youssef O.A., Chastkofsky M.I., Dy D.A., Terns R.M., and Terns M.P. RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP. Genes Dev 19 (2005) 1238-1248. The authors assembled, for the first time, an enzymatically active H/ACA RNP from four recombinant proteins (Cbf5, Nop10, L7Ae and Gar1) and guide RNA. This study was a major step towards unveiling the structural organization of H/ACA RNP.
-
(2005)
Genes Dev
, vol.19
, pp. 1238-1248
-
-
Baker, D.L.1
Youssef, O.A.2
Chastkofsky, M.I.3
Dy, D.A.4
Terns, R.M.5
Terns, M.P.6
-
5
-
-
20144374350
-
Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation
-
•], the authors reconstituted an active H/ACA RNP. They also showed that Cbf5 and Nop10 are minimally required for activity.
-
•], the authors reconstituted an active H/ACA RNP. They also showed that Cbf5 and Nop10 are minimally required for activity.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3133-3144
-
-
Charpentier, B.1
Muller, S.2
Branlant, C.3
-
6
-
-
28544449371
-
The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs
-
The structure of the Cbf5-Nop10 complex was determined, revealing extensive interactions between them. Nop10 is partially disordered in isolation.
-
Hamma T., Reichow S.L., Varani G., and Ferre-D'Amare A.R. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat Struct Mol Biol 12 (2005) 1101-1107. The structure of the Cbf5-Nop10 complex was determined, revealing extensive interactions between them. Nop10 is partially disordered in isolation.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 1101-1107
-
-
Hamma, T.1
Reichow, S.L.2
Varani, G.3
Ferre-D'Amare, A.R.4
-
7
-
-
33644867181
-
Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity
-
•], the structure of the Cbf5-Nop10 complex was solved. The authors also carefully analyzed the contribution of the two Nop10 domains to the assembly and activity of H/ACA RNP.
-
•], the structure of the Cbf5-Nop10 complex was solved. The authors also carefully analyzed the contribution of the two Nop10 domains to the assembly and activity of H/ACA RNP.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 826-839
-
-
Manival, X.1
Charron, C.2
Fourmann, J.B.3
Godard, F.4
Charpentier, B.5
Branlant, C.6
-
8
-
-
30744445688
-
Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita
-
A structure comprising Cbf5, Nop10 and a third protein, Gar1, represents the largest protein-only complex that could be assembled by archaeal H/ACA proteins. Gar1 binds Cbf5 independently of Nop10.
-
Rashid R., Liang B., Baker D.L., Youssef O.A., He Y., Phipps K., Terns R.M., Terns M.P., and Li H. Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol Cell 21 (2006) 249-260. A structure comprising Cbf5, Nop10 and a third protein, Gar1, represents the largest protein-only complex that could be assembled by archaeal H/ACA proteins. Gar1 binds Cbf5 independently of Nop10.
-
(2006)
Mol Cell
, vol.21
, pp. 249-260
-
-
Rashid, R.1
Liang, B.2
Baker, D.L.3
Youssef, O.A.4
He, Y.5
Phipps, K.6
Terns, R.M.7
Terns, M.P.8
Li, H.9
-
9
-
-
33748947672
-
Crystal structure of an H/ACA box ribonucleoprotein particle
-
This study presents the first structure of an entire H/ACA RNP. The structure reveals how H/ACA RNA is assembled into the complex and how RNA-guided pseudouridylation could occur.
-
Li L., and Ye K. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443 (2006) 302-307. This study presents the first structure of an entire H/ACA RNP. The structure reveals how H/ACA RNA is assembled into the complex and how RNA-guided pseudouridylation could occur.
-
(2006)
Nature
, vol.443
, pp. 302-307
-
-
Li, L.1
Ye, K.2
-
10
-
-
0035423087
-
The kink-turn: a new RNA secondary structure motif
-
Klein D.J., Schmeing T.M., Moore P.B., and Steitz T.A. The kink-turn: a new RNA secondary structure motif. EMBO J 20 (2001) 4214-4221
-
(2001)
EMBO J
, vol.20
, pp. 4214-4221
-
-
Klein, D.J.1
Schmeing, T.M.2
Moore, P.B.3
Steitz, T.A.4
-
11
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
-
Rozhdestvensky T.S., Tang T.H., Tchirkova I.V., Brosius J., Bachellerie J.P., and Huttenhofer A. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res 31 (2003) 869-877
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 869-877
-
-
Rozhdestvensky, T.S.1
Tang, T.H.2
Tchirkova, I.V.3
Brosius, J.4
Bachellerie, J.P.5
Huttenhofer, A.6
-
12
-
-
33750972578
-
Pseudouridine synthases
-
Hamma T., and Ferre-D'Amare A.R. Pseudouridine synthases. Chem Biol 13 (2006) 1125-1135
-
(2006)
Chem Biol
, vol.13
, pp. 1125-1135
-
-
Hamma, T.1
Ferre-D'Amare, A.R.2
-
13
-
-
0035966271
-
Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme
-
Hoang C., and Ferre-D'Amare A.R. Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell 107 (2001) 929-939
-
(2001)
Cell
, vol.107
, pp. 929-939
-
-
Hoang, C.1
Ferre-D'Amare, A.R.2
-
14
-
-
0242331664
-
Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
-
Pan H., Agarwalla S., Moustakas D.T., Finer-Moore J., and Stroud R.M. Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit. Proc Natl Acad Sci USA 100 (2003) 12648-12653
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12648-12653
-
-
Pan, H.1
Agarwalla, S.2
Moustakas, D.T.3
Finer-Moore, J.4
Stroud, R.M.5
-
15
-
-
2542578632
-
Conformational change of pseudouridine 55 synthase upon its association with RNA substrate
-
Phannachet K., and Huang R.H. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate. Nucleic Acids Res 32 (2004) 1422-1429
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1422-1429
-
-
Phannachet, K.1
Huang, R.H.2
-
16
-
-
2442542173
-
Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins
-
Wang C., and Meier U.T. Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins. EMBO J 23 (2004) 1857-1867
-
(2004)
EMBO J
, vol.23
, pp. 1857-1867
-
-
Wang, C.1
Meier, U.T.2
-
17
-
-
7044285916
-
Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs
-
Henras A.K., Capeyrou R., Henry Y., and Caizergues-Ferrer M. Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs. RNA 10 (2004) 1704-1712
-
(2004)
RNA
, vol.10
, pp. 1704-1712
-
-
Henras, A.K.1
Capeyrou, R.2
Henry, Y.3
Caizergues-Ferrer, M.4
-
18
-
-
29844442763
-
Structural study of the H/ACA snoRNP components Nop10p and the 3′ hairpin of U65 snoRNA
-
Khanna M., Wu H., Johansson C., Caizergues-Ferrer M., and Feigon J. Structural study of the H/ACA snoRNP components Nop10p and the 3′ hairpin of U65 snoRNA. RNA 12 (2006) 40-52
-
(2006)
RNA
, vol.12
, pp. 40-52
-
-
Khanna, M.1
Wu, H.2
Johansson, C.3
Caizergues-Ferrer, M.4
Feigon, J.5
-
19
-
-
2342638215
-
Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolution
-
Hamma T., and Ferre-D'Amare A.R. Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolution. Structure 12 (2004) 893-903
-
(2004)
Structure
, vol.12
, pp. 893-903
-
-
Hamma, T.1
Ferre-D'Amare, A.R.2
-
20
-
-
2342475659
-
Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA
-
Moore T., Zhang Y., Fenley M.O., and Li H. Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12 (2004) 807-818
-
(2004)
Structure
, vol.12
, pp. 807-818
-
-
Moore, T.1
Zhang, Y.2
Fenley, M.O.3
Li, H.4
-
21
-
-
0030572699
-
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions
-
Balakin A.G., Smith L., and Fournier M.J. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell 86 (1996) 823-834
-
(1996)
Cell
, vol.86
, pp. 823-834
-
-
Balakin, A.G.1
Smith, L.2
Fournier, M.J.3
-
22
-
-
0038613099
-
Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme
-
Ishitani R., Nureki O., Nameki N., Okada N., Nishimura S., and Yokoyama S. Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme. Cell 113 (2003) 383-394
-
(2003)
Cell
, vol.113
, pp. 383-394
-
-
Ishitani, R.1
Nureki, O.2
Nameki, N.3
Okada, N.4
Nishimura, S.5
Yokoyama, S.6
-
23
-
-
0026583945
-
GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast
-
Girard J.P., Lehtonen H., Caizergues-Ferrer M., Amalric F., Tollervey D., and Lapeyre B. GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast. EMBO J 11 (1992) 673-682
-
(1992)
EMBO J
, vol.11
, pp. 673-682
-
-
Girard, J.P.1
Lehtonen, H.2
Caizergues-Ferrer, M.3
Amalric, F.4
Tollervey, D.5
Lapeyre, B.6
-
24
-
-
0032080005
-
Gar1p binds to the small nucleolar RNAs snR10 and snR30 in vitro through a nontypical RNA binding element
-
Bagni C., and Lapeyre B. Gar1p binds to the small nucleolar RNAs snR10 and snR30 in vitro through a nontypical RNA binding element. J Biol Chem 273 (1998) 10868-10873
-
(1998)
J Biol Chem
, vol.273
, pp. 10868-10873
-
-
Bagni, C.1
Lapeyre, B.2
-
25
-
-
0028232756
-
Identification of a segment of the small nucleolar ribonucleoprotein-associated protein GAR1 that is sufficient for nucleolar accumulation
-
Girard J.P., Bagni C., Caizergues-Ferrer M., Amalric F., and Lapeyre B. Identification of a segment of the small nucleolar ribonucleoprotein-associated protein GAR1 that is sufficient for nucleolar accumulation. J Biol Chem 269 (1994) 18499-18506
-
(1994)
J Biol Chem
, vol.269
, pp. 18499-18506
-
-
Girard, J.P.1
Bagni, C.2
Caizergues-Ferrer, M.3
Amalric, F.4
Lapeyre, B.5
-
26
-
-
33744800299
-
Integrating snoRNP assembly with mRNA biogenesis
-
Richard P., and Kiss T. Integrating snoRNP assembly with mRNA biogenesis. EMBO Rep 7 (2006) 590-592
-
(2006)
EMBO Rep
, vol.7
, pp. 590-592
-
-
Richard, P.1
Kiss, T.2
-
27
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
Ganot P., Bortolin M.L., and Kiss T. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89 (1997) 799-809
-
(1997)
Cell
, vol.89
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.L.2
Kiss, T.3
-
28
-
-
33751013845
-
Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure
-
Hoang C., Chen J., Vizthum C.A., Kandel J.M., Hamilton C.S., Mueller E.G., and Ferre-D'Amare A.R. Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure. Mol Cell 24 (2006) 535-545
-
(2006)
Mol Cell
, vol.24
, pp. 535-545
-
-
Hoang, C.1
Chen, J.2
Vizthum, C.A.3
Kandel, J.M.4
Hamilton, C.S.5
Mueller, E.G.6
Ferre-D'Amare, A.R.7
-
29
-
-
19444383162
-
Dyskeratosis congenita: telomerase, telomeres and anticipation
-
Marrone A., Walne A., and Dokal I. Dyskeratosis congenita: telomerase, telomeres and anticipation. Curr Opin Genet Dev 15 (2005) 249-257
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 249-257
-
-
Marrone, A.1
Walne, A.2
Dokal, I.3
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