Allelic variation in the NPY gene in 14 Indian populations

Journal of Human Genetics

Volumn 52, Issue 7, 2007, Pages 592-598

  Bhaskar, L V K S ^a   Thangaraj, K ^a   Shah, Anish M ^a   Pardhasaradhi, G ^a   Praveen Kumar, K ^a   Reddy, A G ^a   Papa Rao, A ^b   Mulligan, C J ^c   Singh, Lalji ^a   Rao, V R ^d  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

^b SRI VENKATESWARA UNIVERSITY   (India)

^c University of Florida ^*  (United States)

^d Anthropological Survey of India   (India)

Author keywords

Allelic variation; Neuropeptide Y; SNP

Indexed keywords

GENOMIC DNA; LEUCINE; NEUROPEPTIDE Y; PROLINE; SERINE;

ALLELE; ARTICLE; BIOASSAY; CHI SQUARE TEST; CONTROLLED STUDY; DNA EXTRACTION; FOUNDER EFFECT; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE MUTATION; GENETIC DRIFT; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; INDIA; MALE; POPULATION GENETICS; STATISTICAL SIGNIFICANCE;

ALLELES; AMINO ACID SUBSTITUTION; GENETICS, POPULATION; HUMANS; INDIA; MALE; NEUROPEPTIDE Y; POLYMORPHISM, SINGLE NUCLEOTIDE; PROLINE; VARIATION (GENETICS);

EID: 34347336445     PISSN: 14345161     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10038-007-0158-x     Document Type: Article

References (38)

1. Abecasis GR, Noguchi E, Heinzmann A, Traherne JA, Bhattacharyya S, Leaves NI, Anderson GG, Zhang Y, Lench NJ, Carey A, Cardon LR, Moffatt MF, Cookson WO (2001) Extent and distribution of linkage disequilibrium in three genomic regions. Am J Hum Genet 68:191-197
2. Bamshad M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, Naidu JM, Prasad BV, Reddy PG, Rasanayagam A, Papiha SS, Villems R, Redd AJ, Hammer MF, Nguyen SV, Carroll ML, Batzer MA, Jorde LB (2001) Genetic evidence on the origins of Indian caste populations. Genome Res 11:994-1004
3. Barrett JC, Fry B, Maller J, Daly MJ (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263-265
4. Bray MS, Boerwinkle E, Hanis CL (2000) Sequence variation within the neuropeptide Y gene and obesity in Mexican Americans. Obes Res 8:219-226
5. Breeks JW (ed)(1873) An account of the primitive tribes and monuments of the Nilgiris. India Museum, London
6. Cubells JF, Kobayashi K, Nagatsu T, Kidd KK, Kidd JR, Calafell F, Kranzler HR, Ichinose H, Gelernter J (1997) Population genetics of a functional variant of the dopamine β-hydroxylase gene (DBH). Am J Med Genet 74:374-379
7. Ding B (2003) Distribution of the NPY 1128C allele frequency in different populations. J Neural Transm 110:1199-1204
8. Ding B, Bertilsson L, Wahlestedt C (2002) The single nucleotide polymorphism T1128C in the signal peptide of neuropeptide Y (NPY) was not identified in a Korean population. J Clin Pharm Ther 27:211-212
9. Drube J, Kawamura N, Nakamura A, Ando T, Komaki G, Inada T (2001) No leucine(7)-to-proline(7) polymorphism in the signal peptide of neuropeptide Y in Japanese population or Japanese with alcoholism. Psychiatr Genet 11:53-55
10. Duan S, Gao R, Xing Q, Du J, Liu Z, Chen Q, Wang H, Feng G, He L (2005) A family-based association study of schizophrenia with polymorphisms at three candidate genes. Neurosci Lett 379:32-36
11. Gabriel SM, Davidson M, Haroutunian V, Powchik P, Bierer LM, Purohit DP, Perl DP, Davis KL (1996) Neuropeptide deficits in schizophrenia vs Alzheimer's disease cerebral cortex. Biol Psychiatry 39:82-91
12. Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86:485-486
13. Gribkoff VK, Pieschl RL, Wisialowski TA, van den Pol AN, Yocca FD (1998) Phase shifting of circadian rhythms and depression of neuronal activity in the rat suprachiasmatic nucleus by neuropeptide Y: mediation by different receptor subtypes. J Neurosci 18:3014-3022
14. Itokawa M, Arai M, Kato S, Ogata Y, Furukawa A, Haga S, Ujike H, Sora I., Ikeda K, Yoshikawa T (2003) Association between a novel polymorphism in the promoter region of the neuropeptide Y gene and schizophrenia in humans. Neurosci Lett 347:202-204
15. Jia C, Liu Z, Liu T, Ning Y (2005) The T1128C polymorphism of neuropeptide Y gene in a Chinese population. Arch Med Res 36:175-177
16. Kallio J, Pesonen U, Karvonen MK, Kojima M, Hosoda H, Kangawa K, Koulu M (2001) Enhanced exercise-induced GH secretion in subjects with Pro7 substitution in the prepro-NPY. J Clin Endocrinol Metab 86:5348-5352
17. Karvonen MK, Pesonen U, Koulu M, Niskanen L, Laakso M, Rissanen A, Dekker J, Hart LM, Valve R, Uusitupa MIJ (1998) Association of a leucine(7)-to- proline(7) polymorphism in the signal peptide of neuropeptide Y with high serum cholesterol and LDL cholesterol levels. Nat Med 4:1434-1437
18. Karvonen MK, Valkonen VP, Lakka TA, Salonen R, Koulu M, Pesonen U, Tuomainen TP, Kauhanen J, Nyyssonen K, Lakka HM, Uusitupa MI, Salonen JT (2001) Leucine7 to proline7 polymorphism in the preproneuropeptide Y is associated with the progression of carotid atherosclerosis, blood pressure and serum lipids in Finnish men. Atherosclerosis 159:145-151
19. Lappalainen J, Kranzler HR, Malison R, Price LH, Van Dyck C, Rosenheck RA, Cramer J, Southwick S, Charney D, Krystal J, Gelernter J (2002) A functional neuropeptide Y Leu7Pro polymorphism associated with alcohol dependence in a large population sample from the United States. Arch Gen Psychiatry 59:825-831
20. Larhammar D (1996) Evolution of neuropeptide Y, peptide YY and pancreatic polypeptide. Regul Pept 62:1-11
21. Magni P (2003) Hormonal control of the neuropeptide Y system. Curr Protein Pept Sci 4:45-57
22. Makino K, Kataoka Y, Hirakawa Y, Ikeda A, Yamauchi A, Oishi AR (2001) A leucine(7)-to-proline(7) polymorphism in the signal peptide of neuropeptide Y was not identified in the Japanese population. J Clin Pharm Ther 26:201-203
23. McDonald JK (1990) Role of neuropeptide Y in reproductive function. Ann NY Acad Sci 611:258-272
24. Mueller JC (2004) Linkage disequilibrium for different scales and applications. Brief Bioinform 5:355-364
25. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
26. Niskanen L, Karvonen MK, Valve R, Koulu M, Pesonen U, Mercuri M, Rauramaa R, Toyry J, Laakso M, Uusitupa MIJ (2000a) Leucine 7 to proline 7 polymorphism in the neuropeptide Y gene is associated with enhanced carotid atherosclerosis in elderly patients with type 2 diabetes and control subjects. J Clin Endocr Metab 85:2266-2269
27. Niskanen L, Voutilainen-Kaunisto R, Terasvirta M, Karvonen MK, Valve R, Pesonen U, Laakso M, Uusitupa MI, Koulu M (2000b) Leucine 7 to proline 7 polymorphism in the neuropeptide y gene is associated with retinopathy in type 2 diabetes. Exp Clin Endocrinol Diabetes 108:235-236
28. Okubo T, Harada S (2001) Polymorphism of the neuropeptide Y gene: an association study with alcohol withdrawal. Alcohol Clin Exp Res 6:59S-62S
29. Pettersson-Fernholm K, Karvonen MK, Kallio J, Forsblom CM, Koulu M, Pesonen U, Fagerudd JA, Groop PH, FinnDiane Study Group (2004) Leucine 7 to proline 7 polymorphism in the preproneuropeptide Y is associated with proteinuria, coronary heart disease, and glycemic control in type 1 diabetic patients. Diabetes Care 27:503-509
30. Roychoudhury S, Roy S, Basu A, Banerjee R, Vishwanathan H, Usha Rani MV, Sil SK, Mitra M, Majumder PP (2001) Genomic structures and population histories of linguistically distincttribal groups of India. Hum Genet 109:339-350
31. Saha N (1976) Population genetic studies in Kerala and the Nilgiris. Hum Hered 26:175-197
32. Schneider S, Roessli D, Excoffier L (2000) Arlequin v.2.0: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva
33. Thangaraj K, Joshi MB, Reddy AG, Gupta NJ, Chakravarty B, Singh L (2002) CAG repeat expansion in the androgen receptor gene is not associated with male infertility in Indian populations. J Androl 23:815-818
34. Thangaraj K, Chaubey G, Kivisild T, Reddy AG, Singh VK, Rasalkar AA, Singh L (2005) Reconstructing the origin of Andaman Islanders. Science 308:996
35. Thanseem I, Thangaraj K, Chaubey G, Singh VK, Bhaskar LVKS, Reddy BM, Reddy AG, Singh L (2006) Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA. BMC Genet 7:42
36. The International HapMap Consortium (2003) The International HapMap Project. Nature 426:789-796
37. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
38. Zapata C (2000) The D′ measure of overall gametic disequilibrium between pairs of multiallelic loci. Evolution Int J Org Evolution 54:1809-1812