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Volumn 47, Issue 3, 2007, Pages 940-944

Protein-protein binding-sites prediction by protein surface structure conservation

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SITES; CHEMICAL PROPERTIES; GENETIC ALGORITHMS; PHYSICAL PROPERTIES;

EID: 34250859584     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci6005257     Document Type: Article
Times cited : (45)

References (24)
  • 4
    • 0026335990 scopus 로고
    • Rational Design of Receptor-Specific Variants of Human Growth Hormone
    • Cunningham, B. C.; Wells, J. A. Rational Design of Receptor-Specific Variants of Human Growth Hormone. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 3407-3411.
    • (1991) Proc. Natl. Acad. Sci. U.S.A , vol.88 , pp. 3407-3411
    • Cunningham, B.C.1    Wells, J.A.2
  • 5
    • 0028916599 scopus 로고    scopus 로고
    • Clackson, T.; Wells, J. A. A Hot Spot of Binding Energy in a Hormone-Receptor Interface. Science 1995, 267, 383-386.
    • Clackson, T.; Wells, J. A. A Hot Spot of Binding Energy in a Hormone-Receptor Interface. Science 1995, 267, 383-386.
  • 6
    • 0037609791 scopus 로고    scopus 로고
    • Protein-Protein Interactions: Structurally Conserved Residues Distinguish between Binding Sites and Exposed Protein Surfaces
    • Ma, B.; Elkayam, T.; Wolfson, H.; Nussinov, R. Protein-Protein Interactions: Structurally Conserved Residues Distinguish between Binding Sites and Exposed Protein Surfaces. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 5772-5777.
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 5772-5777
    • Ma, B.1    Elkayam, T.2    Wolfson, H.3    Nussinov, R.4
  • 7
    • 7944225979 scopus 로고    scopus 로고
    • Protein-Protein Interactions: Hot Spots and Structurally Conserved Residues often Locate in Complemented Pockets that Pre-Organized in the Unbound States: Implications for Docking
    • Li, X.; Keskin, O.; Ma, B.; Nussinov, R.; Liang, J. Protein-Protein Interactions: Hot Spots and Structurally Conserved Residues often Locate in Complemented Pockets that Pre-Organized in the Unbound States: Implications for Docking. J. Mol. Biol. 2004, 344, 781-795.
    • (2004) J. Mol. Biol , vol.344 , pp. 781-795
    • Li, X.1    Keskin, O.2    Ma, B.3    Nussinov, R.4    Liang, J.5
  • 8
    • 11844249426 scopus 로고    scopus 로고
    • Hot Regions in Protein-Protein Interactions: The Organization and Contribution of Structurally Conserved Hot Spot Residues
    • Keskin, O.; Ma, B.; Nussinov, R. Hot Regions in Protein-Protein Interactions: The Organization and Contribution of Structurally Conserved Hot Spot Residues. J. Mol. Biol. 2005, 345, 1281-1294.
    • (2005) J. Mol. Biol , vol.345 , pp. 1281-1294
    • Keskin, O.1    Ma, B.2    Nussinov, R.3
  • 9
    • 0031565725 scopus 로고    scopus 로고
    • Prediction of Protein-Protein Interaction Sites Using Patch Analysis
    • Jones, S.; Thornton, J. M. Prediction of Protein-Protein Interaction Sites Using Patch Analysis. J. Mol. Biol. 1997, 272, 133-143.
    • (1997) J. Mol. Biol , vol.272 , pp. 133-143
    • Jones, S.1    Thornton, J.M.2
  • 10
    • 17444372787 scopus 로고    scopus 로고
    • Improved Prediction of Protein-Protein Binding Sites Using a Support Vector Machines Approach
    • Bradford, J. R.; Westhead, D. R. Improved Prediction of Protein-Protein Binding Sites Using a Support Vector Machines Approach. Bioinformatics 2005, 21, 1487-1494.
    • (2005) Bioinformatics , vol.21 , pp. 1487-1494
    • Bradford, J.R.1    Westhead, D.R.2
  • 11
    • 1842526090 scopus 로고    scopus 로고
    • Neuvirth, H.; Raz, R.; Schreiber, G. ProMate: A Structure Based Prediction Program To Identify the Location of Protein-Protein Binding Sites. J. Mol. Biol. 2004, 338, 181-199.
    • Neuvirth, H.; Raz, R.; Schreiber, G. ProMate: A Structure Based Prediction Program To Identify the Location of Protein-Protein Binding Sites. J. Mol. Biol. 2004, 338, 181-199.
  • 12
    • 0034730415 scopus 로고    scopus 로고
    • A Fast Method to Predict Protein Interaction Sites from Sequences
    • Gallet, X.; Charloteaux, B.; Thomas, A.; Brasseur, R. A Fast Method to Predict Protein Interaction Sites from Sequences. J. Mol. Biol. 2000, 302, 917-926.
    • (2000) J. Mol. Biol , vol.302 , pp. 917-926
    • Gallet, X.1    Charloteaux, B.2    Thomas, A.3    Brasseur, R.4
  • 13
    • 0036468385 scopus 로고    scopus 로고
    • Prediction of Protein-Protein Interactions by Docking Methods
    • Smith, G. R.; Sternberg, M. J. Prediction of Protein-Protein Interactions by Docking Methods. Curr. Opin. Struct. Biol. 2002, 12, 28-35.
    • (2002) Curr. Opin. Struct. Biol , vol.12 , pp. 28-35
    • Smith, G.R.1    Sternberg, M.J.2
  • 14
    • 0346733329 scopus 로고    scopus 로고
    • Are Protein-Protein Interfaces More Conserved in Sequence than the Rest of the Protein Surface?
    • Caffrey, D. R.; Somaroo, S.; Hughes, J. D. Are Protein-Protein Interfaces More Conserved in Sequence than the Rest of the Protein Surface? Protein Sci. 2004, 13, 190-202.
    • (2004) Protein Sci , vol.13 , pp. 190-202
    • Caffrey, D.R.1    Somaroo, S.2    Hughes, J.D.3
  • 15
    • 20844454090 scopus 로고    scopus 로고
    • Prediction of Protein-Protein Interactions by Combining Structure and Sequence Conservation in Protein Interfaces
    • Aytuna, A. S.; Gursoy, A.; Keskin, O. Prediction of Protein-Protein Interactions by Combining Structure and Sequence Conservation in Protein Interfaces. Bioinformatics 2005, 21, 2850-2855.
    • (2005) Bioinformatics , vol.21 , pp. 2850-2855
    • Aytuna, A.S.1    Gursoy, A.2    Keskin, O.3
  • 16
    • 0036406643 scopus 로고    scopus 로고
    • A New Method to Detect Related Function Among Proteins Independent of Sequence and Fold Homology
    • Schmitt, S.; Kuhn, D.; Klebe, G. A New Method to Detect Related Function Among Proteins Independent of Sequence and Fold Homology. J. Mol. Biol. 2002, 323, 387-406.
    • (2002) J. Mol. Biol , vol.323 , pp. 387-406
    • Schmitt, S.1    Kuhn, D.2    Klebe, G.3
  • 18
    • 34250874709 scopus 로고    scopus 로고
    • Konc, J.; Janežič, D. A Maximum Clique Problem Revisited. Eur. J. Oper. Res. (submitted).
    • Konc, J.; Janežič, D. A Maximum Clique Problem Revisited. Eur. J. Oper. Res. (submitted).
  • 19
    • 34250828071 scopus 로고    scopus 로고
    • A Branch and Bound Algorithm for Matching Protein Structures
    • Konc, J.; Janežič, D. A Branch and Bound Algorithm for Matching Protein Structures. Lect. Notes Comput. Sci. 2007, 4432, 399-406.
    • (2007) Lect. Notes Comput. Sci , vol.4432 , pp. 399-406
    • Konc, J.1    Janežič, D.2
  • 20
    • 84893482610 scopus 로고
    • Solution for the Best Rotation to Relate Two Sets of Vectors
    • Kabsch, W. A Solution for the Best Rotation to Relate Two Sets of Vectors. Acta Crystallogr., Sect. A 1976, 32, 922-923.
    • (1976) Acta Crystallogr., Sect. A , vol.32 , pp. 922-923
    • Kabsch, W.A.1
  • 21
    • 0030602896 scopus 로고    scopus 로고
    • A Dataset of Protein-Protein Interfaces Generated with a Sequence-Order-Independent Comparison Technique
    • Tsai, C. J.; Lin, S. L.; Wolfson, H. J.; Nussinov, R. A Dataset of Protein-Protein Interfaces Generated with a Sequence-Order-Independent Comparison Technique. J. Mot. Biol. 1996, 260, 604-620.
    • (1996) J. Mot. Biol , vol.260 , pp. 604-620
    • Tsai, C.J.1    Lin, S.L.2    Wolfson, H.J.3    Nussinov, R.4
  • 24
    • 0033254029 scopus 로고    scopus 로고
    • Nuclear Import and Export Pathways
    • Moroianu, J. Nuclear Import and Export Pathways. J. Cell. Biochem. 1998, 33, 76-83.
    • (1998) J. Cell. Biochem , vol.33 , pp. 76-83
    • Moroianu, J.1


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