-
1
-
-
0034691202
-
A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
-
Joung, J.K., Ramm, E.I. & Pabo, C.O. A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions. Proc. Natl. Acad. Sci. USA 97, 7382-7387 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7382-7387
-
-
Joung, J.K.1
Ramm, E.I.2
Pabo, C.O.3
-
2
-
-
33645508729
-
Counter-selectable marker for bacterial-based interaction trap systems
-
Meng, X., Smith, R.M., Giesecke, A.G., Joung, J.K. & Wolfe, S.A. Counter-selectable marker for bacterial-based interaction trap systems. Biotechniques 40, 179-184 (2006).
-
(2006)
Biotechniques
, vol.40
, pp. 179-184
-
-
Meng, X.1
Smith, R.M.2
Giesecke, A.G.3
Joung, J.K.4
Wolfe, S.A.5
-
3
-
-
15444366146
-
The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation
-
Nickels, B.E. et al. The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation. Proc. Natl. Acad. Sci. USA 102, 4488-4493 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4488-4493
-
-
Nickels, B.E.1
-
4
-
-
23344441710
-
Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa
-
Vallet-Gely, I., Donovan, K.E., Fang, R., Joung, J.K. & Dove, S.L. Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 102, 11082-11087 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11082-11087
-
-
Vallet-Gely, I.1
Donovan, K.E.2
Fang, R.3
Joung, J.K.4
Dove, S.L.5
-
5
-
-
33745436961
-
2 zinc-fingers
-
published online 31 March, doi:10.1038/msb4100053
-
2 zinc-fingers. Mol. Syst. Biol. 2, published online 31 March 2006 (doi:10.1038/msb4100053).
-
(2006)
Mol. Syst. Biol
, vol.2
-
-
Giesecke, A.1
Fang, R.2
Joung, J.3
-
6
-
-
0142091373
-
Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection
-
Hurt, J.A., Thibodeau, S.A., Hirsh, A.S., Pabo, C.O. & Joung, J.K. Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection. Proc. Natl. Acad. Sci. USA 100, 12271-12276 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12271-12276
-
-
Hurt, J.A.1
Thibodeau, S.A.2
Hirsh, A.S.3
Pabo, C.O.4
Joung, J.K.5
-
7
-
-
23444446753
-
A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors
-
Meng, X., Brodsky, M.H. & Wolfe, S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nat. Biotechnol. 23, 988-994 (2005).
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 988-994
-
-
Meng, X.1
Brodsky, M.H.2
Wolfe, S.A.3
-
8
-
-
33744480822
-
A bacterial one-hybrid selection system for interrogating zinc finger-DNA interactions
-
Durai, S., Bosley, A., Abulencia, A.B., Chandrasegaran, S. & Ostermeier, M. A bacterial one-hybrid selection system for interrogating zinc finger-DNA interactions. Comb. Chem. High Throughput Screen 9 301-311 (2006).
-
(2006)
Comb. Chem. High Throughput Screen
, vol.9
, pp. 301-311
-
-
Durai, S.1
Bosley, A.2
Abulencia, A.B.3
Chandrasegaran, S.4
Ostermeier, M.5
-
9
-
-
0037007835
-
A bacterial small-molecule three-hybrid system
-
Althoff, E.A. & Cornish, V.W. A bacterial small-molecule three-hybrid system. Angew Chem. Int. Ed. Engl. 41, 2327-2330 (2002).
-
(2002)
Angew Chem. Int. Ed. Engl
, vol.41
, pp. 2327-2330
-
-
Althoff, E.A.1
Cornish, V.W.2
-
10
-
-
0032032533
-
Conversion of the omega subunit of Escherichia coli RNA polymerase into a transcriptional activator or an activation target
-
Dove, S.L. & Hochschild, A. Conversion of the omega subunit of Escherichia coli RNA polymerase into a transcriptional activator or an activation target. Genes Dev. 12, 745-754 (1998).
-
(1998)
Genes Dev
, vol.12
, pp. 745-754
-
-
Dove, S.L.1
Hochschild, A.2
-
11
-
-
0030907304
-
Activation of prokaryotic transcription through arbitrary protein-protein contacts
-
Dove, S.L., Joung, J.K. & Hochschild, A. Activation of prokaryotic transcription through arbitrary protein-protein contacts. Nature 386, 627-630 (1997).
-
(1997)
Nature
, vol.386
, pp. 627-630
-
-
Dove, S.L.1
Joung, J.K.2
Hochschild, A.3
-
12
-
-
0026434553
-
Identification of the DNA binding site for NGFI-B by genetic selection in yeast
-
Wilson, T.E., Fahrner, T.J., Johnston, M. & Milbrandt, J. Identification of the DNA binding site for NGFI-B by genetic selection in yeast. Science 252, 1296-1300 (1991).
-
(1991)
Science
, vol.252
, pp. 1296-1300
-
-
Wilson, T.E.1
Fahrner, T.J.2
Johnston, M.3
Milbrandt, J.4
-
13
-
-
7444267933
-
A gateway-compatible yeast one-hybrid system
-
Deplancke, B., Dupuy, D., Vidal, M. & Walhout, A.J. A gateway-compatible yeast one-hybrid system. Genome Res. 14, 2093-2101 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 2093-2101
-
-
Deplancke, B.1
Dupuy, D.2
Vidal, M.3
Walhout, A.J.4
-
14
-
-
0027528993
-
CASTing for multicomponent DNA-binding complexes
-
Wright, W.E. & Funk, W.D. CASTing for multicomponent DNA-binding complexes. Trends Biochem. Sci. 18, 77-80 (1993).
-
(1993)
Trends Biochem. Sci
, vol.18
, pp. 77-80
-
-
Wright, W.E.1
Funk, W.D.2
-
15
-
-
0036022523
-
High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
-
Roulet, E. et al. High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites. Nat. Biotechnol. 20, 831-835 (2002).
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 831-835
-
-
Roulet, E.1
-
16
-
-
0034049099
-
Escherichia coli one- and two-hybrid systems for the analysis and identification of protein-protein interactions
-
Hu, J.C., Kornacker, M.G. & Hochschild, A. Escherichia coli one- and two-hybrid systems for the analysis and identification of protein-protein interactions. Methods 20, 80-94 (2000).
-
(2000)
Methods
, vol.20
, pp. 80-94
-
-
Hu, J.C.1
Kornacker, M.G.2
Hochschild, A.3
-
17
-
-
21044452487
-
A combined yeast/bacteria two-hybrid system: Development and evaluation
-
Serebriiskii, I.G. et al. A combined yeast/bacteria two-hybrid system: Development and evaluation. Mol. Cell. Proteomics 4, 819-826 (2005).
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 819-826
-
-
Serebriiskii, I.G.1
-
18
-
-
0030736323
-
Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state
-
Jen-Jacobson, L. Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state. Biopolymers 44, 153-180 (1997).
-
(1997)
Biopolymers
, vol.44
, pp. 153-180
-
-
Jen-Jacobson, L.1
-
19
-
-
1542346163
-
High-throughput beta-galactosidase assay for bacterial cell-based reporter systems
-
Thibodeau, S.A., Fang, R. & Joung, J.K. High-throughput beta-galactosidase assay for bacterial cell-based reporter systems. Biotechniques 36, 410-415 (2004).
-
(2004)
Biotechniques
, vol.36
, pp. 410-415
-
-
Thibodeau, S.A.1
Fang, R.2
Joung, J.K.3
-
20
-
-
0027440294
-
Distinct DNA binding preferences for the c-Myc/Max and Max/Max dimers
-
Solomon, D.L., Amati, B. & Land, H. Distinct DNA binding preferences for the c-Myc/Max and Max/Max dimers. Nucleic Acids Res. 21, 5372-5376 (1993).
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5372-5376
-
-
Solomon, D.L.1
Amati, B.2
Land, H.3
-
21
-
-
0001514956
-
-
Yan, R., Small, S., Desplan, C., Dearolf, C.R. & Darnell, J.E. Jr. Identification of a Stat gene that functions in Drosophila development. Cell 84, 421-430 (1996).
-
Yan, R., Small, S., Desplan, C., Dearolf, C.R. & Darnell, J.E. Jr. Identification of a Stat gene that functions in Drosophila development. Cell 84, 421-430 (1996).
-
-
-
-
22
-
-
0041765676
-
User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding libraries
-
Patrick, W.M., Firth, A.E. & Blackburn, J.M. User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding libraries. Protein Eng. 16, 451-457 (2003).
-
(2003)
Protein Eng
, vol.16
, pp. 451-457
-
-
Patrick, W.M.1
Firth, A.E.2
Blackburn, J.M.3
-
23
-
-
18044397860
-
Mathematical expressions useful in the construction, description and evaluation of protein libraries
-
Bosley, A.D. & Ostermeier, M. Mathematical expressions useful in the construction, description and evaluation of protein libraries. Biomol. Eng. 22, 57-61 (2005).
-
(2005)
Biomol. Eng
, vol.22
, pp. 57-61
-
-
Bosley, A.D.1
Ostermeier, M.2
-
24
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T.L. & Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36 (1994).
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
25
-
-
0035228215
-
BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
-
Liu, X., Brutlag, D.L. & Liu, J.S. BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput. 6, 127-138 (2001).
-
(2001)
Pac. Symp. Biocomput
, vol.6
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
27
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa, M. et al. Assessing computational tools for the discovery of transcription factor binding sites. Nat. Biotechnol. 23, 137-144 (2005).
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 137-144
-
-
Tompa, M.1
-
28
-
-
26444584579
-
Limitations and potentials of current motif discovery algorithms
-
Hu, J., Li, B. & Kihara, D. Limitations and potentials of current motif discovery algorithms. Nucleic Acids Res. 33, 4899-4913 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4899-4913
-
-
Hu, J.1
Li, B.2
Kihara, D.3
-
29
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider, T.D. & Stephens, R.M. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res. 18, 6097-6100 (1990).
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
30
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M. & Brenner, S.E. WebLogo: A sequence logo generator. Genome Res. 14, 1188-1190 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
|