Isolation and characterization of 70 novel microsatellite markers from ostrich (Struthio camelus) genome

Genome

Volumn 46, Issue 5, 2003, Pages 833-840

  Tang, Bo ^a   Huang, Yin Hua ^a   Lin, Li ^a   Hu, Xiao Xiang ^a   Feng, Ji Dong ^a   Yao, Ping ^a   Zhang, Lao ^a   Li, Ning ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Enriched library; Microsatellite markers; Ostrich; Polymorphism

Indexed keywords

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; GENETIC MARKERS; GENOMIC LIBRARY; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; STRUTHIONIFORMES;

AVES; CAMELUS; STRUTHIO CAMELUS;

EID: 0344064937     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g03-059     Document Type: Article

References (36)

1. Barendse, W., Armitage, S.M., Kossarek, L.M., Kirkpatrick, B.W., Ryan, A.M., et al. 1994. A genetic linkage map of the bovine genome. Nat. Genet. 6: 227-235.
2. Beckman, J.S., and Webber, J.L. 1992. Survey of human and rat microsatellites. Genomics, 12: 627-631.
3. Cheng, H.H., and Crittenden, L.B. 1994. Microsatellite markers for genetic mapping in the chicken. Poult. Sci. 73: 539-546.
4. Cheng, H.H., Levin, I., Vallejo, R.L., Khatib, H., Dodgson, J.B., Crittenden, L.B., and Hillel, J. 1995. Development of a genetic map of the chicken with markers of high utility. Poult. Sci. 74: 1855-1874.
5. Cooper, A., and Penny, D. 1997. Mass survival of birds across the cretaceous-tertiary: molecular evidence. Science (Washington, D.C.), 275: 1109-1113
6. Cooper, A., Lalueza-Fox, C., Anderson, S., Rambaut, A., Austin, J., and Ward, R. 2001. Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution. Nature (London), 409: 704-707
7. Cracraft, J. 1974. Phylogeny and evolution of the ratite birds. Ibis, 116: 494-521.
8. Crawford, A.M., Dodds, K.G., Ede, A.J., Pierson, C.A., Montgomery, G.W., et al. 1995. An autosomal genetic linkage map of the sheep genome. Genetics, 140: 703-724.
9. Crittenden, L.B., Provencher, L., Santangelo, L., Levin, I., Abplanalp, H., Briles, R.W., Briles, W.E., and Dodgson, J.B. 1993. Characterization of a red jungle fowl by white leghorn backcross reference population for molecular mapping of the chicken genome. Poult. Sci. 72: 334-348.
10. Deeming, D.C. 1999. The ostrich: biology, production and health. CABI Press Hatchery Consulting and Research, Wallingford, and University of Manchester, U.K.
11. de Gortari, M.J., Freking, B.A., Cuthbertson, R.P., Kappes, S.M., Keele, J.W., Stone, R.T., Leymaster, K.A., Dodds, K.G., Crawford, A.M., and Beattie, C.W. 1998. A second-generation linkage map of the sheep genome. Mamm. Genome, 9: 204-209.
12. Fischer, D., and Bachmann, K. 1998. Microsatellite enrichment in organisms with large genomes. BioTechniques, 24: 796-802.
13. Gibbs, M., Dawson, D.A., McCamley, C., Wardle, A.F., Armour, J.A., and Burke, T. 1997. Chicken microsatellite markers isolated from libraries enriched for simple tandem repeats. Anim. Genet. 28: 401-417.
14. Groenen, M.A., Crooijmans, R.P., Veenendaal, A., Cheng, H.H., Siwek, M., and van der Poel, J.J. 1998. A comprehensive microsatellite linkage map of the chicken genome. Genomics, 49: 265-274.
15. Groenen, M.A., Cheng, H.H., Bumstead, N., Benkel, B.F., Briles, W.E., Burke, T., Burt, D.W., Crittenden, L.B., Dodgson, J., Hillel, J., Lamont, S., de Leon, A.P., Soller, M., Takahashi, H., and Vignal, A. 2000. A consensus linkage map of the chicken genome. Genome Res. 10: 137-147.
16. Inoue-Murayama, M., Kayang, B.B., Kimura, K., Ide, H., Nomura, A., et al. 2001. Chicken microsatellite primers are not efficient markers for Japanese quail. Anim. Genet. 32: 7-11.
17. Kandpal, R.P., Kandpal, G., and Weissman, S.M. 1994. Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers. Proc. Natl. Acad. Sci. U.S.A. 91: 88-92.
18. Kappes, S.M., Keele, J.W., Stone, R.T., McGraw, R.A., Sonstegard, T.S., Smith, T.P., Lopez-Corrales, N.L., and Beattie, C.W. 1997. A second-generation linkage map of the bovine genome. Genome Res. 7: 235-249
19. Kayang, B.B., Inoue-Murayama, M., Nomura, A., Kimura, K., Takahashi, H., Mizutani, M., and Ito, S. 2000. Fifty microsatellite markers for Japanese quail. J. Hered. 91: 502-505.
20. Kimwele, C.N., Graves, J.A., Burke, T., and Hanotte, O. 1998. Development of microsatellite markers for parentage typing of chicks in the ostrich Struthio camelus. Mol. Ecol. 7: 247-255.
21. Kumari, P., and Kemp, S.J. 1998. Polymorphic microsatellite markers in the ostrich (Struthio camelus). Mol. Ecol. 7: 133-140.
22. Lench, N.J., Norris, A., Bailey, A., Booth, A., and Markham, A.F. 1996. Vectorette PCR isolation of microsatellite repeat sequences using anchored dinucleotide repeat primers. Nucleic Acids Res. 24: 2190-2191.
23. Paniego, N., Echaide, M., Muñoz, M., Fernández, L., Torales, S., Faccio, P., Fuxan, I., Carrera, M., Zandomeni, R., Suárez, E.Y., and Hopp, H.E. 2002. Microsatellite isolation and characterization in sunflower (Helianthus annuus L.). Genome, 45: 34-43.
24. Primmer, C.R., Raudsepp, T., Chowdhary, B.P., Moller, A.P., and Ellegren, H. 1997. Low frequency of microsatellites in the avian genome. Genome Res. 7: 471-482.
25. Reed, K.M., Roberts, M.C., Murtaugh, J., Beattie, C.W., and Alexander, L.J. 2000a. Eight new dinucleotide microsatellite loci in turkey (Meleagris gallopavo). Anim. Genet. 31: 140.
26. Reed, K.M., Mendoza, K.M., and Beattie, C.W. 2000b. Comparative analysis of microsatellite loci in chicken and turkey. Genome, 43: 796-802.
27. Rohrer, G.A., Alexander, L.J., Hu, Z., Smith, T.P., Keele, J.W., and Beattie, C.W. 1996. A comprehensive map of the porcine genome. Genome Res. 6: 371-391.
28. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
29. n repetitive sequences in mammalian genomes. Genomics, 10: 807-815.
30. Tautz, D., and Renz. M. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12: 4127-4138.
31. Taylor, E.L., Vercoe, P., Cockrem, J., Groth, D., Wetherall, J.D., and Martin, G.B. 1999. Isolation and characterization of microsatellite loci in the emu, Dromaius novaehollandiae, and cross-species amplification within Ratitae. Mol. Ecol. 8: 1963-1964.
32. van Tuinen, M., Sibley, C.G., and Hedges, S.B. 1998. Phylogeny and biogeography of ratite birds inferred from DNA sequences of the mitochondrial ribosomal genes. Mol. Biol. Evol. 15: 370-376.
33. Ward, W.K., Matthews, M.F., Murray, N.D., and Robinson, N.A. 1994. An ostrich dinucleotide repeat polymorphism at the VIAS-OS2 locus. Anim. Genet. 25: 291.
34. Ward, W.K., McPartlan, H.C., Matthews, M.F., Murray, N.D., and Robinson, N.A. 1998. Ostrich microsatellite polymorphisms at the VIAS-OS4, VIAS-OS8, VIAS-OS14, VIAS-OS22 and VIAS-OS29 loci. Anim. Genet. 29: 331.
35. Vaiman, D., Schibler, L., Bourgeois, F., Oustry, A., Amigues, Y., and Cribiu, E.P. 1996. A genetic linkage map of the male goat genome. Genetics, 144: 279-305.
36. Zane, L., Bargelloni, L., and Patarnello, T. 2002. Strategies for microsatellite isolation: a review. Mol. Ecol. 11: 1-16.