Development, inheritance, and linkage-group assignment of 60 novel microsatellite markers for the gray, short-tailed opossum Monodelphis domestica

Genome

Volumn 48, Issue 6, 2005, Pages 1019-1027

  Gouin, Nicolas ^a   Westenberger, Scott J ^a,c   Mahaney, Susan M ^a   Lindley, Peter ^a   VandeBerg, John L ^b   Samollow, Paul B ^a  

^a SOUTHWEST FOUNDATION FOR BIOMEDICAL RESEARCH   (United States)

^b SOUTHWEST NATIONAL PRIMATE RESEARCH CENTER   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Enriched libraries; Genetic linkage analysis; Marsupial; Microsatellite; Monodelphis domestica

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ARTICLE; CHROMOSOME MAP; GENE LIBRARY; GENETIC LINKAGE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; INHERITANCE; OPOSSUM; POLYMERASE CHAIN REACTION;

ANIMALS; CHROMOSOME MAPPING; GENE LIBRARY; GENETIC LINKAGE; GENETIC MARKERS; GENETIC VARIATION; INHERITANCE PATTERNS; LINKAGE (GENETICS); MICROSATELLITE REPEATS; MONODELPHIS; POLYMERASE CHAIN REACTION; VARIATION (GENETICS);

ANIMALIA; DIDELPHIDAE; DIDELPHIMORPHIA; METATHERIA; MONODELPHIS DOMESTICA;

EID: 33645795457     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g05-059     Document Type: Article

References (26)

1. Arcot, S.S., Wan, Z., Weber, J.L., Deininger, P.L., and Batzer, M.A. 1995. Alu repeats: a source for the genesis of primer microsatellites. Genomics, 29: 136-144.
2. Armour, J.A.L., Neumann, R., Gobert, S., and Jeffreys, A.J. 1994. Isolation of human simple repeat loci by hybridization selection. Hum. Mol. Genet. 3: 599-605.
3. Carleton, K.L., Streelman, J.T., Lee, B.-Y., Garnhart, N., Kidd, M., and Kocher, T.D. 2002. Rapid isolation of CA microsatellites from tilapia genome. Anim. Genet. 33: 140-144.
4. Fondon, J.W., III, Mele, G.M., Brezinschek, R.I., Cummings, D., Pande, A., Wren, J., et al. 1998. Computerized polymorphic marker identification: experimental validation and a predicted human polymorphism catalog. Proc. Nat. Acad. Sci. U.S.A. 95: 7514-7519.
5. Gibbs, M., Dawson, D.A., McCamley, C., Wardle, A.F., Armour, J.A.L., and Burke, T. 1997. Chicken microsatellite markers isolated from libraries enriched for simple tandem repeats. Anim. Genet. 28: 401-417.
6. Goldstein, D.B., and Schlotterer, C. 1999. Microsatellites: evolution and applications. Oxford University Press Inc., New York.
7. Gouin, N., Westenberger, S.J., Mahaney, S., and Samollow, P.B. 2005. Isolation and characterization of polymorphic microsatellite markers in the gray, short-tailed opossum (Monodelphis domestica). Mol. Ecol. Notes, 5: 87-89.
8. Green, P. 1990. Documentation of CRIMAP, Version 2.4. Washington University School of Medicine, St. Louis, Mo.
9. Hadonou, A.M., Sargent, D.J., Wilson, F., James, C.M., and Simpson, D.W. 2004. Development of microsatellite markers in Fragaria, their use in genetic diversity analysis, and their potential for genetic linkage mapping. Genome, 47:429-438.
10. Hamilton, M.B., Pincus, E.L., Di Fiore, A., and Fleischer, R.C. 1999. Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques, 27: 500-507.
11. Jarne, P., and Lagoda, P.J.L. 1996. Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 11: 424-428.
12. Jurka, J., and Pethiyagoda, C. 1995. Simple repetitive DNA sequences from primates: compilation and analysis. J. Mol. Evol. 40:120-126.
13. Kayang, B.B., Inoue-Murayama, M., Nomura, A., Kimura, K., Takahashi, H., Mizutani, M., et al. 2000. Fifty microsatellite markers for Japanese quail. J. Hered. 91: 502-505.
14. Lander, E.S., and Schork, N.J. 1994. Genetic dissection of complex traits. Science (Washington, D.C.), 265: 2037-2048.
15. Liu, B.H. 1998. Statistical genomics: linkage, mapping, and QTL analysis. CRC press, New York.
16. Paniego, N., Echaide, M., Muñoz, M., Fernández, L., Torales, S., Faccio, P., et al. 2002. Microsatellite isolation and characterization in sunflower (Helianthus annuus L.). Genome, 45: 34-43.
17. Primmer, C.R., Raudsepp, T., Chowdhary, B.P., Moller, A.P., and Ellegren, H. 1997. Low frequency of microsatellites in the avian genome. Genome Res. 7: 471-482.
18. Ramsay, L., Macaulay, M., Cardle, L., Mongante, M., Ivanissevich, S., Maestri, E., et al. 1999. Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. Plant J. 17: 415-425.
19. Samollow, P.B., and Graves, J.A.M. 1998. Gene maps of marsupials. ILAR J. 39: 203-224.
20. Samollow, P.B., Kammerer, C.M., Mahaney, S.M., Schneider, J.L., Westenberger, S.J., VandeBerg, J.L., et al. 2004. First-generation linkage map of the gray, short-tailed opossum, Monodelphis domestica, reveals genome-wide reduction in female recombination rates. Genetics, 166: 307-329.
21. Tang, B., Huang, Y.H., Lin, L., Hu, X.X., Feng, J.D., Yao, P., et al. 2003. Isolation and characterization of 70 novel microsatellite markers from ostrich (Struthio camelus) genome. Genome, 46: 833-840.
22. Tautz, D., and Renz, M. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12: 4127-4138.
23. Temnykh, S., DeClerck, G., Lukashova, A., Lipovich, L., Cartinhour, S., and McCouch, S. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11: 1441-1452.
24. Thomson, G, and Esposito, M.S. 1999. The genetics of complex diseases. Trends Genet. 15: M17-M20.
25. VandeBerg, J.L. 1999.Terrestrial Vertebrates. In UFAW Handbook on the management of Laboratory Animals. 7th ed. Edited by T. Pool and P. English. Blackwell Science Ltd., Oxford, UK. pp. 193-209.
26. VandeBerg, J.L., and Robinson, E.S. 1997. The laboratory opossum (Monodelphis domestica) in laboratory research. ILAR J. 38: 4-12.