-
1
-
-
33748198540
-
The Revised Road Map to the Manual
-
New York, Springer Brenner DJ, Krieg NR and Staley JT
-
The Revised Road Map to the Manual. GM Garrity JA Bell TG Lilburn, Bergey's Manual of Systematic Bacteriology, Volume 2, Part A, Introductory Essays New York, Springer, Brenner DJ, Krieg NR and Staley JT, 2005 159 220
-
(2005)
Bergey's Manual of Systematic Bacteriology, Volume 2, Part A, Introductory Essays
, pp. 159-220
-
-
Garrity, G.M.1
Bell, J.A.2
Lilburn, T.G.3
-
2
-
-
0023184331
-
Bacterial evolution.
-
2439888
-
Bacterial evolution. CR Woese, Microbiol Rev 1987 51 221 271 2439888
-
(1987)
Microbiol Rev
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
3
-
-
0002803581
-
Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systamatics
-
Berlin, Springer-Verlag Boone DR and Castenholz RW 2nd
-
Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systamatics. W Ludwig HP Klenk, Bergey's Manual of Systematic Bacteriology Berlin, Springer-Verlag, Boone DR and Castenholz RW, 2nd 2001 49 65
-
(2001)
Bergey's Manual of Systematic Bacteriology
, pp. 49-65
-
-
Ludwig, W.1
Klenk, H.P.2
-
4
-
-
0000240137
-
The Genus Bacteroides and Related taxa
-
New York, Springer-Verlag Balows A, Truper HG, Dworkin M, Harder W and Schleifer KH 2
-
The Genus Bacteroides and Related taxa. HN Shah, The Prokaryotes New York, Springer-Verlag, Balows A, Truper HG, Dworkin M, Harder W and Schleifer KH, 2 1992 196 3593 3607
-
(1992)
The Prokaryotes
, vol.196
, pp. 3593-3607
-
-
Shah, H.N.1
-
5
-
-
0000561885
-
The Order Cytophagales
-
New York, Springer-Verlag Balows A, Truper HG, Dworkin M, Harder W and Schleifer KH 2
-
The Order Cytophagales. H Reichenbach, The Prokaryotes New York, Springer-Verlag, Balows A, Truper HG, Dworkin M, Harder W and Schleifer KH, 2 1992 199 3631 3675
-
(1992)
The Prokaryotes
, vol.199
, pp. 3631-3675
-
-
Reichenbach, H.1
-
6
-
-
0028118435
-
Phylogeny of bacteroides, prevotella, and porphyromonas spp.and related bacteria
-
8300528
-
Phylogeny of bacteroides, prevotella, and porphyromonas spp.and related bacteria. BJ Paster FE Dewhirst I Olsen GJ Fraser, J Bacteriol 1994 176 725 732 8300528
-
(1994)
J Bacteriol
, vol.176
, pp. 725-732
-
-
Paster, B.J.1
Dewhirst, F.E.2
Olsen, I.3
Fraser, G.J.4
-
8
-
-
0001045127
-
Bacteroides, Prevotella, and Porphyromonas
-
London, Hodder Arnold Borrelio SP, Murray PR and Funke G 10th
-
Bacteroides, Prevotella, and Porphyromonas. HN Shah SE Gharbia I Olsen, Topley & Wilson's Microbiology and Microbial Infections, London, Hodder Arnold, Borrelio SP, Murray PR and Funke G, 10th 2005 80 1913 1944
-
(2005)
Topley & Wilson's Microbiology and Microbial Infections
, vol.80
, pp. 1913-1944
-
-
Shah, H.N.1
Gharbia, S.E.2
Olsen, I.3
-
9
-
-
0036369407
-
Diverse bacteria related to the bacteroides subgroup of the CFB phylum within the gut symbiotic communities of various termites
-
11866123
-
Diverse bacteria related to the bacteroides subgroup of the CFB phylum within the gut symbiotic communities of various termites. M Ohkuma S Noda Y Hongoh T Kudo, Biosci Biotechnol Biochem 2002 66 78 84 11866123
-
(2002)
Biosci Biotechnol Biochem
, vol.66
, pp. 78-84
-
-
Ohkuma, M.1
Noda, S.2
Hongoh, Y.3
Kudo, T.4
-
10
-
-
0036135163
-
New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon
-
11772628
-
New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. LA O'Sullivan AJ Weightman JC Fry, Appl Environ Microbiol 2002 68 201 210 11772628
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 201-210
-
-
O'Sullivan, L.A.1
Weightman, A.J.2
Fry, J.C.3
-
11
-
-
0036200510
-
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds
-
11931160
-
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. J Anton A Oren S Benlloch F Rodriguez-Valera R Amann R Rossello-Mora, Int J Syst Evol Microbiol 2002 52 485 491 11931160
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 485-491
-
-
Anton, J.1
Oren, A.2
Benlloch, S.3
Rodriguez-Valera, F.4
Amann, R.5
Rossello-Mora, R.6
-
12
-
-
0038205473
-
Genomics of oral bacteria
-
12799321
-
Genomics of oral bacteria. MJ Duncan, Crit Rev Oral Biol Med 2003 14 175 187 12799321
-
(2003)
Crit Rev Oral Biol Med
, vol.14
, pp. 175-187
-
-
Duncan, M.J.1
-
13
-
-
34249910161
-
The Genera Rhodothermus, Thermonema, Hymenobacter and Salinibacter
-
New York, Springer-Verlag Dworkin M and al 3rd, Release 3.3
-
The Genera Rhodothermus, Thermonema, Hymenobacter and Salinibacter. A Oren, The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community New York, Springer-Verlag, Dworkin M and al, 3rd, Release 3.3 2000
-
(2000)
The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community
-
-
Oren, A.1
-
14
-
-
0021156930
-
Bacteroides of the human lower intestinal tract
-
6388494
-
Bacteroides of the human lower intestinal tract. AA Salyers, Annu Rev Microbiol 1984 38 293 313 6388494
-
(1984)
Annu Rev Microbiol
, vol.38
, pp. 293-313
-
-
Salyers, A.A.1
-
15
-
-
0037470975
-
A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
-
12663928
-
A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. J Xu MK Bjursell J Himrod S Deng LK Carmichael HC Chiang LV Hooper JI Gordon, Science 2003 299 2074 2076 12663928
-
(2003)
Science
, vol.299
, pp. 2074-2076
-
-
Xu, J.1
Bjursell, M.K.2
Himrod, J.3
Deng, S.4
Carmichael, L.K.5
Chiang, H.C.6
Hooper, L.V.7
Gordon, J.I.8
-
16
-
-
20044387585
-
Extensive DNA inversions in the B. fragilis genome control variable gene expression
-
15746427
-
Extensive DNA inversions in the B. fragilis genome control variable gene expression. AM Cerdeno-Tarraga S Patrick LC Crossman G Blakely V Abratt N Lennard I Poxton B Duerden B Harris MA Quail A Barron L Clark C Corton J Doggett MT Holden N Larke A Line A Lord H Norbertczak D Ormond C Price E Rabbinowitsch J Woodward B Barrell J Parkhill, Science 2005 307 1463 1465 15746427
-
(2005)
Science
, vol.307
, pp. 1463-1465
-
-
Cerdeno-Tarraga, A.M.1
Patrick, S.2
Crossman, L.C.3
Blakely, G.4
Abratt, V.5
Lennard, N.6
Poxton, I.7
Duerden, B.8
Harris, B.9
Quail, M.A.10
Barron, A.11
Clark, L.12
Corton, C.13
Doggett, J.14
Holden, M.T.15
Larke, N.16
Line, A.17
Lord, A.18
Norbertczak, H.19
Ormond, D.20
Price, C.21
Rabbinowitsch, E.22
Woodward, J.23
Barrell, B.24
Parkhill, J.25
more..
-
17
-
-
25444511762
-
Prevalence of Enterotoxigenic Bacteroides fragilis in patients with diarrhea: A controlled study
-
16701593
-
Prevalence of Enterotoxigenic Bacteroides fragilis in patients with diarrhea: A controlled study. B Durmaz M Dalgalar R Durmaz, Anaerobe 2005 11 318 321 16701593
-
(2005)
Anaerobe
, vol.11
, pp. 318-321
-
-
Durmaz, B.1
Dalgalar, M.2
Durmaz, R.3
-
18
-
-
0001045127
-
Bacteroides, Prevotella and Porphyromonas
-
London, Arnold Balows A and Duerden BI 9th
-
Bacteroides, Prevotella and Porphyromonas. HN Shah SE Gharbia BI Duerden, Topley &Wilson's Microbiology and Microbial Infections vol. 2 Systematic Bacteriology London, Arnold, Balows A and Duerden BI, 9th 1998 58 1305 1330
-
(1998)
Topley &wilson's Microbiology and Microbial Infections Vol. 2 Systematic Bacteriology
, vol.58
, pp. 1305-1330
-
-
Shah, H.N.1
Gharbia, S.E.2
Duerden, B.I.3
-
19
-
-
0034992657
-
Bacterial diversity in human subgingival plaque
-
11371542
-
Bacterial diversity in human subgingival plaque. BJ Paster SK Boches JL Galvin RE Ericson CN Lau VA Levanos A Sahasrabudhe FE Dewhirst, J Bacteriol 2001 183 3770 3783 11371542
-
(2001)
J Bacteriol
, vol.183
, pp. 3770-3783
-
-
Paster, B.J.1
Boches, S.K.2
Galvin, J.L.3
Ericson, R.E.4
Lau, C.N.5
Levanos, V.A.6
Sahasrabudhe, A.7
Dewhirst, F.E.8
-
20
-
-
0034303273
-
Microbial composition of supra- and subgingival plaque in subjects with adult periodontitis
-
11034118
-
Microbial composition of supra- and subgingival plaque in subjects with adult periodontitis. LA Ximenez-Fyvie AD Haffajee SS Socransky, J Clin Periodontol 2000 27 722 732 11034118
-
(2000)
J Clin Periodontol
, vol.27
, pp. 722-732
-
-
Ximenez-Fyvie, L.A.1
Haffajee, A.D.2
Socransky, S.S.3
-
23
-
-
0002054563
-
The Family Chlorobiaceae
-
New York, Springer-Verlag Balows A, Truper HG, Dworkin M, Harder W and Schleifer KH 2
-
The Family Chlorobiaceae. HG Truper N Pfennig, The Prokaryotes New York, Springer-Verlag, Balows A, Truper HG, Dworkin M, Harder W and Schleifer KH, 2 1992 195 3583 3592
-
(1992)
The Prokaryotes
, vol.195
, pp. 3583-3592
-
-
Truper, H.G.1
Pfennig, N.2
-
24
-
-
0037047102
-
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium
-
12093901
-
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. JA Eisen KE Nelson IT Paulsen JF Heidelberg M Wu RJ Dodson R DeBoy ML Gwinn WC Nelson DH Haft EK Hickey JD Peterson AS Durkin JL Kolonay F Yang I Holt LA Umayam T Mason M Brenner TP Shea D Parksey WC Nierman TV Feldblyum CL Hansen MB Craven D Radune J Vamathevan H Khouri O White TM Gruber KA Ketchum JC Venter H Tettelin DA Bryant CM Fraser, Proc Natl Acad Sci U S A 2002 99 9509 9514 12093901
-
(2002)
Proc Natl Acad Sci U S a
, vol.99
, pp. 9509-9514
-
-
Eisen, J.A.1
Nelson, K.E.2
Paulsen, I.T.3
Heidelberg, J.F.4
Wu, M.5
Dodson, R.J.6
Deboy, R.7
Gwinn, M.L.8
Nelson, W.C.9
Haft, D.H.10
Hickey, E.K.11
Peterson, J.D.12
Durkin, A.S.13
Kolonay, J.L.14
Yang, F.15
Holt, I.16
Umayam, L.A.17
Mason, T.18
Brenner, M.19
Shea, T.P.20
Parksey, D.21
Nierman, W.C.22
Feldblyum, T.V.23
Hansen, C.L.24
Craven, M.B.25
Radune, D.26
Vamathevan, J.27
Khouri, H.28
White, O.29
Gruber, T.M.30
Ketchum, K.A.31
Venter, J.C.32
Tettelin, H.33
Bryant, D.A.34
Fraser, C.M.35
more..
-
25
-
-
0033901351
-
Phylogenetic affiliation of the bacteria that constitute phototrophic consortia
-
10985742
-
Phylogenetic affiliation of the bacteria that constitute phototrophic consortia. JM Frostl J Overmann, Arch Microbiol 2000 174 50 58 10985742
-
(2000)
Arch Microbiol
, vol.174
, pp. 50-58
-
-
Frostl, J.M.1
Overmann, J.2
-
26
-
-
33749548848
-
Prokaryotic photosynthesis and phototrophy illuminated
-
16997562
-
Prokaryotic photosynthesis and phototrophy illuminated. DA Bryant NU Frigaard, Trends Microbiol 2006 14 488 496 16997562
-
(2006)
Trends Microbiol
, vol.14
, pp. 488-496
-
-
Bryant, D.A.1
Frigaard, N.U.2
-
27
-
-
0028055018
-
The winds of (evolutionary) change: Breathing new life into microbiology.
-
8282683
-
The winds of (evolutionary) change: breathing new life into microbiology. GJ Olsen CR Woese R Overbeek, J Bacteriol 1994 176 1 6 8282683
-
(1994)
J Bacteriol
, vol.176
, pp. 1-6
-
-
Olsen, G.J.1
Woese, C.R.2
Overbeek, R.3
-
28
-
-
0032080719
-
The phylogenetic relationships of Chlorobium tepidum and Chloroflexus auranticus based upon their RecA sequences
-
9595663
-
The phylogenetic relationships of Chlorobium tepidum and Chloroflexus auranticus based upon their RecA sequences. TM Gruber JA Eisen K Gish DA Bryant, FEMS Microbiol Lett 1998 162 53 60 9595663
-
(1998)
FEMS Microbiol Lett
, vol.162
, pp. 53-60
-
-
Gruber, T.M.1
Eisen, J.A.2
Gish, K.3
Bryant, D.A.4
-
29
-
-
0033030130
-
Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): Implications regarding the origin of photosynthesis
-
10361294
-
Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis. RS Gupta T Mukhtar B Singh, Mol Microbiol 1999 32 893 906 10361294
-
(1999)
Mol Microbiol
, vol.32
, pp. 893-906
-
-
Gupta, R.S.1
Mukhtar, T.2
Singh, B.3
-
30
-
-
2542465712
-
The Phylogeny and Signature Sequences characteristics of Fibrobacters, Chlorobi and Bacteroidetes
-
15239383
-
The Phylogeny and Signature Sequences characteristics of Fibrobacters, Chlorobi and Bacteroidetes. RS Gupta, Crit Rev Microbiol 2004 30 123 143 15239383
-
(2004)
Crit Rev Microbiol
, vol.30
, pp. 123-143
-
-
Gupta, R.S.1
-
31
-
-
0027105895
-
Origin and early evolution of photosynthesis
-
11538390
-
Origin and early evolution of photosynthesis. RE Blankenship, Photosynthesis Research 1992 33 91 111 11538390
-
(1992)
Photosynthesis Research
, vol.33
, pp. 91-111
-
-
Blankenship, R.E.1
-
32
-
-
0347596598
-
Chlorobium tepidum: Insights into the structure, physiology, and metabolism of a green sulfur bacterium derived from the complete genome sequence
-
16245042
-
Chlorobium tepidum: insights into the structure, physiology, and metabolism of a green sulfur bacterium derived from the complete genome sequence. NU Frigaard AG Chew H Li JA Maresca DA Bryant, Photosynth Res 2003 78 93 117 16245042
-
(2003)
Photosynth Res
, vol.78
, pp. 93-117
-
-
Frigaard, N.U.1
Chew, A.G.2
Li, H.3
Maresca, J.A.4
Bryant, D.A.5
-
33
-
-
0016150852
-
Structure of a bacteriochlorophyll-protein from the green photosynthetic bacterium Chlorobium limicola: Crystallographic evidence for a trimer
-
4830866
-
Structure of a bacteriochlorophyll-protein from the green photosynthetic bacterium Chlorobium limicola: crystallographic evidence for a trimer. RE Fenna BW Matthews JM Olson EK Shaw, J Mol Biol 1974 84 231 240 4830866
-
(1974)
J Mol Biol
, vol.84
, pp. 231-240
-
-
Fenna, R.E.1
Matthews, B.W.2
Olson, J.M.3
Shaw, E.K.4
-
34
-
-
0000400103
-
Antenna complexes from green photosynthetic bacateria
-
Dordrecht, Kluwer Blankenship RE, Madigan MT and Bauer CE
-
Antenna complexes from green photosynthetic bacateria. RE Blankenship JM Olson M Miller, Anoxygenic photosynthetic bacteria Dordrecht, Kluwer, Blankenship RE, Madigan MT and Bauer CE, 1995 399 435
-
(1995)
Anoxygenic Photosynthetic Bacteria
, pp. 399-435
-
-
Blankenship, R.E.1
Olson, J.M.2
Miller, M.3
-
35
-
-
6944225464
-
Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation
-
15466707
-
Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation. T Kuwahara A Yamashita H Hirakawa H Nakayama H Toh N Okada S Kuhara M Hattori T Hayashi Y Ohnishi, Proc Natl Acad Sci U S A 2004 101 14919 14924 15466707
-
(2004)
Proc Natl Acad Sci U S a
, vol.101
, pp. 14919-14924
-
-
Kuwahara, T.1
Yamashita, A.2
Hirakawa, H.3
Nakayama, H.4
Toh, H.5
Okada, N.6
Kuhara, S.7
Hattori, M.8
Hayashi, T.9
Ohnishi, Y.10
-
36
-
-
29144485325
-
The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea
-
16330755
-
The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea. EF Mongodin KE Nelson S Daugherty RT DeBoy J Wister H Khouri J Weidman DA Walsh RT Papke PG Sanchez AK Sharma CL Nesbo D MacLeod E Bapteste WF Doolittle RL Charlebois B Legault F Rodriguez-Valera, Proc Natl Acad Sci U S A 2005 102 18147 18152 16330755
-
(2005)
Proc Natl Acad Sci U S a
, vol.102
, pp. 18147-18152
-
-
Mongodin, E.F.1
Nelson, K.E.2
Daugherty, S.3
Deboy, R.T.4
Wister, J.5
Khouri, H.6
Weidman, J.7
Walsh, D.A.8
Papke, R.T.9
Sanchez, P.G.10
Sharma, A.K.11
Nesbo, C.L.12
MacLeod, D.13
Bapteste, E.14
Doolittle, W.F.15
Charlebois, R.L.16
Legault, B.17
Rodriguez-Valera, F.18
-
37
-
-
25644435672
-
Signature Proteins that are Distinctive of Alpha Proteobacteria
-
15960851
-
Signature Proteins that are Distinctive of Alpha Proteobacteria. P Kainth RS Gupta, BMC Genomics 2005 6 94 15960851
-
(2005)
BMC Genomics
, vol.6
, pp. 94
-
-
Kainth, P.1
Gupta, R.S.2
-
38
-
-
33645017409
-
BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species
-
16436211
-
BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species. E Griffiths MS Ventresca RS Gupta, BMC Genomics 2006 7 14 16436211
-
(2006)
BMC Genomics
, vol.7
, pp. 14
-
-
Griffiths, E.1
Ventresca, M.S.2
Gupta, R.S.3
-
39
-
-
33745963185
-
Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups
-
Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups. B Gao R Parmanathan RS Gupta, Antonie van Leeuwenhoek 2006 (In press)
-
(2006)
Antonie Van Leeuwenhoek
-
-
Gao, B.1
Parmanathan, R.2
Gupta, R.S.3
-
40
-
-
33748176992
-
Molecular signatures (unique proteins and conserved Indels) that are specific for the epsilon proteobacteria (Campylobacterales)
-
16817973
-
Molecular signatures (unique proteins and conserved Indels) that are specific for the epsilon proteobacteria (Campylobacterales). RS Gupta, BMC Genomics 2006 7 167 16817973
-
(2006)
BMC Genomics
, vol.7
, pp. 167
-
-
Gupta, R.S.1
-
41
-
-
34247236709
-
Signature Proteins for Archaea and Its Main Subgroups and the Origin of Methanogenesis
-
17394648
-
Signature Proteins for Archaea and Its Main Subgroups and the Origin of Methanogenesis. B Gao RS Gupta, BMC Genomics 2007 8 86 17394648
-
(2007)
BMC Genomics
, vol.8
, pp. 86
-
-
Gao, B.1
Gupta, R.S.2
-
42
-
-
1942423770
-
Prokaryote diversity and taxonomy: Current status and future challenges
-
15253349
-
Prokaryote diversity and taxonomy: current status and future challenges. A Oren, Philos Trans R Soc Lond B Biol Sci 2004 359 623 638 15253349
-
(2004)
Philos Trans R Soc Lond B Biol Sci
, vol.359
, pp. 623-638
-
-
Oren, A.1
-
43
-
-
0036597701
-
Critical Issues in Bacterial Phylogenies
-
12167362
-
Critical Issues in Bacterial Phylogenies. RS Gupta E Griffiths, Theor Popul Biol 2002 61 423 434 12167362
-
(2002)
Theor Popul Biol
, vol.61
, pp. 423-434
-
-
Gupta, R.S.1
Griffiths, E.2
-
44
-
-
0035989433
-
Distributional profiles of homologous open reading frames among bacterial phyla: Implications for vertical and lateral transmission
-
12054238
-
Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission. MA Ragan RL Charlebois, Int J Syst Evol Microbiol 2002 52 777 787 12054238
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 777-787
-
-
Ragan, M.A.1
Charlebois, R.L.2
-
45
-
-
0041810417
-
Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences
-
12892110
-
Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences. JF Imhoff, Int J Syst Evol Microbiol 2003 53 941 951 12892110
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 941-951
-
-
Imhoff, J.F.1
-
46
-
-
0031001691
-
Phylogeny and molecular fingerprinting of green sulfur bacteria
-
9094228
-
Phylogeny and molecular fingerprinting of green sulfur bacteria. J Overmann C Tuschak, Arch Microbiol 1997 167 302 309 9094228
-
(1997)
Arch Microbiol
, vol.167
, pp. 302-309
-
-
Overmann, J.1
Tuschak, C.2
-
47
-
-
0036315809
-
Phylogeny of green sulfur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein
-
12115058
-
Phylogeny of green sulfur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein. B Alexander JH Andersen RP Cox JF Imhoff, Arch Microbiol 2002 178 131 140 12115058
-
(2002)
Arch Microbiol
, vol.178
, pp. 131-140
-
-
Alexander, B.1
Andersen, J.H.2
Cox, R.P.3
Imhoff, J.F.4
-
48
-
-
0031050795
-
Molecular systematic studies of eubacteria, using s70- type sigma factors of group 1 and group 2
-
9045836
-
Molecular systematic studies of eubacteria, using s70- type sigma factors of group 1 and group 2. TM Gruber DA Bryant, J Bacteriol 1997 179 1734 1747 9045836
-
(1997)
J Bacteriol
, vol.179
, pp. 1734-1747
-
-
Gruber, T.M.1
Bryant, D.A.2
-
49
-
-
0034802237
-
Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: Proposal for Tenacibaculum gen. nov with Tenacibaculum maritimum comb. nov and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp nov and Tenacibaculum amylolyticum sp nov
-
11594591
-
Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov with Tenacibaculum maritimum comb. nov and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp nov and Tenacibaculum amylolyticum sp nov. M Suzuki Y Nakagawa S Harayama S Yamamoto, Int J Syst Evol Microbiol 2001 51 1639 1652 11594591
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 1639-1652
-
-
Suzuki, M.1
Nakagawa, Y.2
Harayama, S.3
Yamamoto, S.4
-
50
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
14574403
-
Genome-scale approaches to resolving incongruence in molecular phylogenies. A Rokas BL Williams N King SB Carroll, Nature 2003 425 798 804 14574403
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
51
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. J Felsenstein, Methods in Enzymology 1996 266:418-27 418 427
-
(1996)
Methods in Enzymology
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
52
-
-
0003991673
-
-
Sunderland, Mass., Sinauer Associates, Inc.
-
J Felsenstein, Inferring Phylogenies Sunderland, Mass., Sinauer Associates, Inc. 2004
-
(2004)
Inferring Phylogenies
-
-
Felsenstein, J.1
-
53
-
-
0000492373
-
The uniquely evolved character concept and its cladistic application
-
The uniquely evolved character concept and its cladistic application. WJ Le Quesne, Systematic Zoology 1975 23 513 517
-
(1975)
Systematic Zoology
, vol.23
, pp. 513-517
-
-
Le Quesne, W.J.1
-
54
-
-
84959849415
-
Detecting evolutionary incompatibilities from protein sequences
-
Detecting evolutionary incompatibilities from protein sequences. PHA Sneath MJ Sackin RP Ambler, Systematic Zoology 1975 24 311 332
-
(1975)
Systematic Zoology
, vol.24
, pp. 311-332
-
-
Sneath, P.H.A.1
Sackin, M.J.2
Ambler, R.P.3
-
55
-
-
0017070820
-
A mathematical foundation for the analysis of cladistic character compatibility
-
A mathematical foundation for the analysis of cladistic character compatibility. GF Estabrook CSJ Johnson FR McMorris, Mathematical Biosciences 1976 29 181 187
-
(1976)
Mathematical Biosciences
, vol.29
, pp. 181-187
-
-
Estabrook, G.F.1
Johnson, C.S.J.2
McMorris, F.R.3
-
57
-
-
33845871454
-
Application of the character compatibility approach to generalized molecular sequence data: Branching order of the proteobacterial subdivisions
-
17160641
-
Application of the character compatibility approach to generalized molecular sequence data: Branching order of the proteobacterial subdivisions. RS Gupta PHA Sneath, J Mol Evol 2006 64 90 100 17160641
-
(2006)
J Mol Evol
, vol.64
, pp. 90-100
-
-
Gupta, R.S.1
Sneath, P.H.A.2
-
58
-
-
0041335299
-
Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83
-
12949112
-
Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83. KE Nelson RD Fleischmann RT DeBoy IT Paulsen DE Fouts JA Eisen SC Daugherty RJ Dodson AS Durkin M Gwinn DH Haft JF Kolonay WC Nelson T Mason L Tallon J Gray D Granger H Tettelin H Dong JL Galvin MJ Duncan FE Dewhirst CM Fraser, J Bacteriol 2003 185 5591 5601 12949112
-
(2003)
J Bacteriol
, vol.185
, pp. 5591-5601
-
-
Nelson, K.E.1
Fleischmann, R.D.2
Deboy, R.T.3
Paulsen, I.T.4
Fouts, D.E.5
Eisen, J.A.6
Daugherty, S.C.7
Dodson, R.J.8
Durkin, A.S.9
Gwinn, M.10
Haft, D.H.11
Kolonay, J.F.12
Nelson, W.C.13
Mason, T.14
Tallon, L.15
Gray, J.16
Granger, D.17
Tettelin, H.18
Dong, H.19
Galvin, J.L.20
Duncan, M.J.21
Dewhirst, F.E.22
Fraser, C.M.23
more..
-
59
-
-
33750907710
-
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter
-
17107561
-
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. M Bauer M Kube H Teeling M Richter T Lombardot E Allers CA Wurdemann C Quast H Kuhl F Knaust D Woebken K Bischof M Mussmann JV Choudhuri F Meyer R Reinhardt RI Amann FO Glockner, Environ Microbiol 2006 8 2201 2213 17107561
-
(2006)
Environ Microbiol
, vol.8
, pp. 2201-2213
-
-
Bauer, M.1
Kube, M.2
Teeling, H.3
Richter, M.4
Lombardot, T.5
Allers, E.6
Wurdemann, C.A.7
Quast, C.8
Kuhl, H.9
Knaust, F.10
Woebken, D.11
Bischof, K.12
Mussmann, M.13
Choudhuri, J.V.14
Meyer, F.15
Reinhardt, R.16
Amann, R.I.17
Glockner, F.O.18
-
60
-
-
3242887157
-
CD-Search: Protein domain annotations on the fly
-
15215404
-
CD-Search: protein domain annotations on the fly. A Marchler-Bauer SH Bryant, Nucleic Acids Res 2004 32 W327 W331 15215404
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
61
-
-
0034084865
-
Who's your neighbor? New computational approaches for functional genomics
-
10835597
-
Who's your neighbor? New computational approaches for functional genomics. MY Galperin EV Koonin, Nat Biotechnol 2000 18 609 613 10835597
-
(2000)
Nat Biotechnol
, vol.18
, pp. 609-613
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
62
-
-
0033150942
-
From protein sequence to function
-
10408894
-
From protein sequence to function. A Danchin, Curr Opin Struct Biol 1999 9 363 367 10408894
-
(1999)
Curr Opin Struct Biol
, vol.9
, pp. 363-367
-
-
Danchin, A.1
-
63
-
-
6344241451
-
A regulation cascade controls expression of Porphyromonas gingivalis fimbriae via the FimR response regulator
-
15469523
-
A regulation cascade controls expression of Porphyromonas gingivalis fimbriae via the FimR response regulator. K Nishikawa F Yoshimura MJ Duncan, Mol Microbiol 2004 54 546 560 15469523
-
(2004)
Mol Microbiol
, vol.54
, pp. 546-560
-
-
Nishikawa, K.1
Yoshimura, F.2
Duncan, M.J.3
-
65
-
-
23944499633
-
Horizontal gene transfer, genome innovation and evolution
-
16138096
-
Horizontal gene transfer, genome innovation and evolution. JP Gogarten JP Townsend, Nat Rev Microbiol 2005 3 679 687 16138096
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 679-687
-
-
Gogarten, J.P.1
Townsend, J.P.2
-
66
-
-
0242666381
-
The essential C family DnaE polymerase is error-prone and efficient at lesion bypass
-
12949067
-
The essential C family DnaE polymerase is error-prone and efficient at lesion bypass. I Bruck MF Goodman M O'Donnell, J Biol Chem 2003 278 44361 44368 12949067
-
(2003)
J Biol Chem
, vol.278
, pp. 44361-44368
-
-
Bruck, I.1
Goodman, M.F.2
O'Donnell, M.3
-
67
-
-
3042569657
-
Bacterial genomes as new gene homes: The genealogy of ORFans in E. coli
-
15173110
-
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. V Daubin H Ochman, Genome Res 2004 14 1036 1042 15173110
-
(2004)
Genome Res
, vol.14
, pp. 1036-1042
-
-
Daubin, V.1
Ochman, H.2
-
69
-
-
0034815478
-
The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: Evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga- Flavobacterium- Bacteroides division
-
11535801
-
The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga- Flavobacterium- Bacteroides division. E Griffiths RS Gupta, Microbiology 2001 147 2611 2622 11535801
-
(2001)
Microbiology
, vol.147
, pp. 2611-2622
-
-
Griffiths, E.1
Gupta, R.S.2
-
70
-
-
0042861279
-
Evolutionary Relationships among Photosynthetic Bacteria
-
16228576
-
Evolutionary Relationships Among Photosynthetic Bacteria. RS Gupta, Photosynth Res 2003 76 173 183 16228576
-
(2003)
Photosynth Res
, vol.76
, pp. 173-183
-
-
Gupta, R.S.1
-
71
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein databases search programs
-
9254694
-
Gapped BLAST and PSI-BLAST: a new generation of protein databases search programs. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Research 1997 25 3389 3402 9254694
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
74
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
10742046
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 540 552 10742046
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
76
-
-
0028509254
-
TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
-
7828077
-
TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. PY Van de R De Wachter, Comput Appl Biosci 1994 10 569 570 7828077
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 569-570
-
-
Van De, P.Y.1
De Wachter, R.2
-
77
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
11319253
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. S Whelan N Goldman, Mol Biol Evol 2001 18 691 699 11319253
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
78
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
11934758
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. HA Schmidt K Strimmer M Vingron A von Haeseler, Bioinformatics 2002 18 502 504 11934758
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
79
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
15260895
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. S Kumar K Tamura M Nei, Brief Bioinform 2004 5 150 163 15260895
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
80
-
-
0000461280
-
Confidence limits in phylogenies: An approach using the bootstap
-
Confidence limits in phylogenies: an approach using the bootstap. J Felsenstein, Evolution 1985 39 783 791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
82
-
-
0031794743
-
Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes
-
9841678
-
Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships Among Archaebacteria, Eubacteria, and Eukaryotes. RS Gupta, Microbiol Mol Biol Rev 1998 62 1435 1491 9841678
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 1435-1491
-
-
Gupta, R.S.1
-
83
-
-
0033823160
-
The phylogeny of Proteobacteria: Relationships to other eubacterial phyla and eukaryotes
-
10978543
-
The phylogeny of Proteobacteria: relationships to other eubacterial phyla and eukaryotes. RS Gupta, FEMS Microbiol Rev 2000 24 367 402 10978543
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 367-402
-
-
Gupta, R.S.1
-
84
-
-
0344034192
-
Molecular signatures in protein sequences that are characteristic of Cyanobacteria and plastid homologues
-
14657112
-
Molecular signatures in protein sequences that are characteristic of Cyanobacteria and plastid homologues. RS Gupta M Pereira C Chandrasekera V Johari, Int J Syst Evol Microbiol 2003 53 1833 1842 14657112
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1833-1842
-
-
Gupta, R.S.1
Pereira, M.2
Chandrasekera, C.3
Johari, V.4
|